Clone Sequence Records
BS01028.5prime Sequence
674 bp (673 high quality bases) assembled on 2005-11-30
> BS01028.5prime
GAAGTTATCAGTCGACATGATGAACGAGGCGGCACTTGCCAATATGATAC
CCTACGACACCATCGGATTGTATGAACAGCCAAAGCCGCGCTTCATCTTC
AAGATGCCTCGTGTGGTCCCGGACCAGAAGTCCAAGTTCGAGAGCGACGA
ACTTTTCCGGAGGCTCAGTCGGGAGAGCGAGGTTCGGTACACGGGCTATC
GGGAACGAAGCATCGAGGAGCGGCAGGTGCGCTTCATGAACGGATGTCGC
GAAGGACACACGGAGGCCAGCTTCGTGGCATCGGGCACCAATCTGCAGCT
GGTGTTCAACGCCAACCAGAACCCGTACCTGCACGACAAGGAGTGCGACT
TTGACAAGGAGCACGGCAAGGTGCACATCAAGTCCTACTTTATCATGAAC
GGGGTTTGTGTCCGGTTCCGTGGATGGATAGACCTGGAACGACTGGACGG
AGTTGGCTGTCTGGAGTATGACGAGCGGCGCGCCATGCACGAGGACGCCA
TTCTGCGGGATCAGATCGATCGCTACAACCAGCGACTGCGTGAGTTCGAG
GACACTAAGCGCGCCTACCGTGACAATCGACAGGACGAGATGGAGGCAGT
GCGACGGGGCGTGGCCTCCGGAGGCATTGGCGTTGGCGCCAGCATGTGGC
GTCGTTAGCGAAGCTTTCTAGACC
BS01028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7959-PA | 642 | Bgb-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
CG7960-PA | 642 | Bro-RA | 97..155 | 92..150 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bgb-RB | 1242 | CG7959-RB | 285..926 | 17..658 | 3210 | 100 | Plus |
Bgb-RA | 1242 | CG7959-RA | 285..926 | 17..658 | 3210 | 100 | Plus |
Bro-RA | 744 | CG7960-RA | 110..575 | 69..534 | 470 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1639995..1640636 | 17..658 | 3210 | 100 | Plus |
3L | 28110227 | 3L | 1647978..1648443 | 69..534 | 425 | 72.7 | Plus |
Blast to na_te.dros performed 2015-02-11 11:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 3766..3819 | 65..12 | 108 | 66.7 | Minus |
BS01028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:40 Download gff for
BS01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:02 Download gff for
BS01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7959-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:18:57 Download gff for
BS01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 279..934 | 11..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:41 Download gff for
BS01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 279..934 | 11..665 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:41 Download gff for
BS01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1639989..1640644 | 11..665 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:18:57 Download gff for
BS01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1639989..1640644 | 11..665 | 98 | | Plus |
BS01028.3prime Sequence
674 bp (673 high quality bases) assembled on 2005-11-30
> BS01028.3prime
ATGGTCTAGAAAGCTTCGCTAACGACGCCACATGCTGGCGCCAACGCCAA
TGCCTCCGGAGGCCACGCCCCGTCGCACTGCCTCCATCTCGTCCTGTCGA
TTGTCACGGTAGGCGCGCTTAGTGTCCTCGAACTCACGCAGTCGCTGGTT
GTAGCGATCGATCTGATCCCGCAGAATGGCGTCCTCGTGCATGGCGCGCC
GCTCGTCATACTCCAGACAGCCAACTCCGTCCAGTCGTTCCAGGTCTATC
CATCCACGGAACCGGACACAAACCCCGTTCATGATAAAGTAGGACTTGAT
GTGCACCTTGCCGTGCTCCTTGTCAAAGTCGCACTCCTTGTCGTGCAGGT
ACGGGTTCTGGTTGGCGTTGAACACCAGCTGCAGATTGGTGCCCGATGCC
ACGAAGCTGGCCTCCGTGTGTCCTTCGCGACATCCGTTCATGAAGCGCAC
CTGCCGCTCCTCGATGCTTCGTTCCCGATAGCCCGTGTACCGAACCTCGC
TCTCCCGACTGAGCCTCCGGAAAAGTTCGTCGCTCTCGAACTTGGACTTC
TGGTCCGGGACCACACGAGGCATCTTGAAGATGAAGCGCGGCTTTGGCTG
TTCATACAATCCGATGGTGTCGTAGGGTATCATATTGGCAAGTGCCGCCT
CGTTCATCATGTCGACTGATAACT
BS01028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7959-PA | 642 | Bgb-RA | 1..642 | 660..19 | 3210 | 100 | Minus |
CG7960-PA | 642 | Bro-RA | 97..155 | 585..527 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bgb-RB | 1242 | CG7959-RB | 285..926 | 660..19 | 3210 | 100 | Minus |
Bgb-RA | 1242 | CG7959-RA | 285..926 | 660..19 | 3210 | 100 | Minus |
Bro-RA | 744 | CG7960-RA | 110..575 | 608..143 | 470 | 75 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1639995..1640636 | 660..19 | 3210 | 100 | Minus |
3L | 28110227 | 3L | 1647978..1648443 | 608..143 | 425 | 72.7 | Minus |
Blast to na_te.dros performed 2015-02-10 19:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 3766..3819 | 612..665 | 108 | 66.7 | Plus |
BS01028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:39 Download gff for
BS01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-PA | 1..642 | 19..660 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:00 Download gff for
BS01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7959-PA | 1..642 | 19..660 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:26:00 Download gff for
BS01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 279..934 | 12..666 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:14 Download gff for
BS01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 279..934 | 12..666 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:14 Download gff for
BS01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1639989..1640644 | 12..666 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:26:00 Download gff for
BS01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1639989..1640644 | 12..666 | 98 | | Minus |
BS01028.complete Sequence
676 bp (676 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634501
> BS01028.complete
GAAGTTATCAGTCGACATGATGAACGAGGCGGCACTTGCCAATATGATAC
CCTACGACACCATCGGATTGTATGAACAGCCAAAGCCGCGCTTCATCTTC
AAGATGCCTCGTGTGGTCCCGGACCAGAAGTCCAAGTTCGAGAGCGACGA
ACTTTTCCGGAGGCTCAGTCGGGAGAGCGAGGTTCGGTACACGGGCTATC
GGGAACGAAGCATCGAGGAGCGGCAGGTGCGCTTCATGAACGGATGTCGC
GAAGGACACACGGAGGCCAGCTTCGTGGCATCGGGCACCAATCTGCAGCT
GGTGTTCAACGCCAACCAGAACCCGTACCTGCACGACAAGGAGTGCGACT
TTGACAAGGAGCACGGCAAGGTGCACATCAAGTCCTACTTTATCATGAAC
GGGGTTTGTGTCCGGTTCCGTGGATGGATAGACCTGGAACGACTGGACGG
AGTTGGCTGTCTGGAGTATGACGAGCGGCGCGCCATGCACGAGGACGCCA
TTCTGCGGGATCAGATCGATCGCTACAACCAGCGACTGCGTGAGTTCGAG
GACACTAAGCGCGCCTACCGTGACAATCGACAGGACGAGATGGAGGCAGT
GCGACGGGGCGTGGCCTCCGGAGGCATTGGCGTTGGCGCCAGCATGTGGC
GTCGTTAGCGAAGCTTTCTAGACCAT
BS01028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bgb-RB | 762 | CG7959-PB | 1..642 | 17..658 | 3210 | 100 | Plus |
Bgb-RA | 642 | CG7959-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Bro-RA | 642 | CG7960-PA | 74..539 | 69..534 | 425 | 72.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bgb-RB | 1242 | CG7959-RB | 285..926 | 17..658 | 3210 | 100 | Plus |
Bgb-RA | 1242 | CG7959-RA | 285..926 | 17..658 | 3210 | 100 | Plus |
Bro-RA | 744 | CG7960-RA | 110..575 | 69..534 | 425 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1639995..1640636 | 17..658 | 3210 | 100 | Plus |
3L | 28110227 | 3L | 1647978..1648443 | 69..534 | 425 | 72.7 | Plus |
Blast to na_te.dros performed 2014-11-28 00:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 3766..3819 | 65..12 | 108 | 66.7 | Minus |
BS01028.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:47 Download gff for
BS01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:08 Download gff for
BS01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 288..943 | 11..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:46 Download gff for
BS01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 285..926 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:47 Download gff for
BS01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 288..943 | 11..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:36 Download gff for
BS01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 285..926 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:36 Download gff for
BS01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1639995..1640636 | 17..660 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:46 Download gff for
BS01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1639995..1640636 | 17..660 | 99 | | Plus |
BS01028.pep Sequence
Translation from 16 to 657
> BS01028.pep
MMNEAALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRL
SRESEVRYTGYRERSIEERQVRFMNGCREGHTEASFVASGTNLQLVFNAN
QNPYLHDKECDFDKEHGKVHIKSYFIMNGVCVRFRGWIDLERLDGVGCLE
YDERRAMHEDAILRDQIDRYNQRLREFEDTKRAYRDNRQDEMEAVRRGVA
SGGIGVGASMWRR*
BS01028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bgb-PA | 213 | CG7959-PA | 1..213 | 1..213 | 1132 | 100 | Plus |
Bgb-PB | 253 | CG7959-PB | 1..213 | 1..213 | 1132 | 100 | Plus |
Bro-PA | 213 | CG7960-PA | 11..202 | 5..198 | 684 | 65.1 | Plus |