Clone BS01028 Report

Search the DGRC for BS01028

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptBgb-RA
Protein status:BS01028.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01028.5prime Sequence

674 bp (673 high quality bases) assembled on 2005-11-30

> BS01028.5prime
GAAGTTATCAGTCGACATGATGAACGAGGCGGCACTTGCCAATATGATAC
CCTACGACACCATCGGATTGTATGAACAGCCAAAGCCGCGCTTCATCTTC
AAGATGCCTCGTGTGGTCCCGGACCAGAAGTCCAAGTTCGAGAGCGACGA
ACTTTTCCGGAGGCTCAGTCGGGAGAGCGAGGTTCGGTACACGGGCTATC
GGGAACGAAGCATCGAGGAGCGGCAGGTGCGCTTCATGAACGGATGTCGC
GAAGGACACACGGAGGCCAGCTTCGTGGCATCGGGCACCAATCTGCAGCT
GGTGTTCAACGCCAACCAGAACCCGTACCTGCACGACAAGGAGTGCGACT
TTGACAAGGAGCACGGCAAGGTGCACATCAAGTCCTACTTTATCATGAAC
GGGGTTTGTGTCCGGTTCCGTGGATGGATAGACCTGGAACGACTGGACGG
AGTTGGCTGTCTGGAGTATGACGAGCGGCGCGCCATGCACGAGGACGCCA
TTCTGCGGGATCAGATCGATCGCTACAACCAGCGACTGCGTGAGTTCGAG
GACACTAAGCGCGCCTACCGTGACAATCGACAGGACGAGATGGAGGCAGT
GCGACGGGGCGTGGCCTCCGGAGGCATTGGCGTTGGCGCCAGCATGTGGC
GTCGTTAGCGAAGCTTTCTAGACC

BS01028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7959-PA 642 Bgb-RA 1..642 17..658 3210 100 Plus
CG7960-PA 642 Bro-RA 97..155 92..150 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Bgb-RB 1242 CG7959-RB 285..926 17..658 3210 100 Plus
Bgb-RA 1242 CG7959-RA 285..926 17..658 3210 100 Plus
Bro-RA 744 CG7960-RA 110..575 69..534 470 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1639995..1640636 17..658 3210 100 Plus
3L 28110227 3L 1647978..1648443 69..534 425 72.7 Plus
Blast to na_te.dros performed 2015-02-11 11:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 3766..3819 65..12 108 66.7 Minus

BS01028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:40 Download gff for BS01028.5prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:02 Download gff for BS01028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7959-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:18:57 Download gff for BS01028.5prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 279..934 11..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:41 Download gff for BS01028.5prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 279..934 11..665 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:41 Download gff for BS01028.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1639989..1640644 11..665 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:18:57 Download gff for BS01028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1639989..1640644 11..665 98   Plus

BS01028.3prime Sequence

674 bp (673 high quality bases) assembled on 2005-11-30

> BS01028.3prime
ATGGTCTAGAAAGCTTCGCTAACGACGCCACATGCTGGCGCCAACGCCAA
TGCCTCCGGAGGCCACGCCCCGTCGCACTGCCTCCATCTCGTCCTGTCGA
TTGTCACGGTAGGCGCGCTTAGTGTCCTCGAACTCACGCAGTCGCTGGTT
GTAGCGATCGATCTGATCCCGCAGAATGGCGTCCTCGTGCATGGCGCGCC
GCTCGTCATACTCCAGACAGCCAACTCCGTCCAGTCGTTCCAGGTCTATC
CATCCACGGAACCGGACACAAACCCCGTTCATGATAAAGTAGGACTTGAT
GTGCACCTTGCCGTGCTCCTTGTCAAAGTCGCACTCCTTGTCGTGCAGGT
ACGGGTTCTGGTTGGCGTTGAACACCAGCTGCAGATTGGTGCCCGATGCC
ACGAAGCTGGCCTCCGTGTGTCCTTCGCGACATCCGTTCATGAAGCGCAC
CTGCCGCTCCTCGATGCTTCGTTCCCGATAGCCCGTGTACCGAACCTCGC
TCTCCCGACTGAGCCTCCGGAAAAGTTCGTCGCTCTCGAACTTGGACTTC
TGGTCCGGGACCACACGAGGCATCTTGAAGATGAAGCGCGGCTTTGGCTG
TTCATACAATCCGATGGTGTCGTAGGGTATCATATTGGCAAGTGCCGCCT
CGTTCATCATGTCGACTGATAACT

BS01028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7959-PA 642 Bgb-RA 1..642 660..19 3210 100 Minus
CG7960-PA 642 Bro-RA 97..155 585..527 145 89.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
Bgb-RB 1242 CG7959-RB 285..926 660..19 3210 100 Minus
Bgb-RA 1242 CG7959-RA 285..926 660..19 3210 100 Minus
Bro-RA 744 CG7960-RA 110..575 608..143 470 75 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1639995..1640636 660..19 3210 100 Minus
3L 28110227 3L 1647978..1648443 608..143 425 72.7 Minus
Blast to na_te.dros performed 2015-02-10 19:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 3766..3819 612..665 108 66.7 Plus

BS01028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:39 Download gff for BS01028.3prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-PA 1..642 19..660 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:00 Download gff for BS01028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7959-PA 1..642 19..660 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:26:00 Download gff for BS01028.3prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 279..934 12..666 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:14 Download gff for BS01028.3prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 279..934 12..666 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:14 Download gff for BS01028.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1639989..1640644 12..666 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:26:00 Download gff for BS01028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1639989..1640644 12..666 98   Minus

BS01028.complete Sequence

676 bp (676 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634501

> BS01028.complete
GAAGTTATCAGTCGACATGATGAACGAGGCGGCACTTGCCAATATGATAC
CCTACGACACCATCGGATTGTATGAACAGCCAAAGCCGCGCTTCATCTTC
AAGATGCCTCGTGTGGTCCCGGACCAGAAGTCCAAGTTCGAGAGCGACGA
ACTTTTCCGGAGGCTCAGTCGGGAGAGCGAGGTTCGGTACACGGGCTATC
GGGAACGAAGCATCGAGGAGCGGCAGGTGCGCTTCATGAACGGATGTCGC
GAAGGACACACGGAGGCCAGCTTCGTGGCATCGGGCACCAATCTGCAGCT
GGTGTTCAACGCCAACCAGAACCCGTACCTGCACGACAAGGAGTGCGACT
TTGACAAGGAGCACGGCAAGGTGCACATCAAGTCCTACTTTATCATGAAC
GGGGTTTGTGTCCGGTTCCGTGGATGGATAGACCTGGAACGACTGGACGG
AGTTGGCTGTCTGGAGTATGACGAGCGGCGCGCCATGCACGAGGACGCCA
TTCTGCGGGATCAGATCGATCGCTACAACCAGCGACTGCGTGAGTTCGAG
GACACTAAGCGCGCCTACCGTGACAATCGACAGGACGAGATGGAGGCAGT
GCGACGGGGCGTGGCCTCCGGAGGCATTGGCGTTGGCGCCAGCATGTGGC
GTCGTTAGCGAAGCTTTCTAGACCAT

BS01028.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Bgb-RB 762 CG7959-PB 1..642 17..658 3210 100 Plus
Bgb-RA 642 CG7959-PA 1..642 17..658 3210 100 Plus
Bro-RA 642 CG7960-PA 74..539 69..534 425 72.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Bgb-RB 1242 CG7959-RB 285..926 17..658 3210 100 Plus
Bgb-RA 1242 CG7959-RA 285..926 17..658 3210 100 Plus
Bro-RA 744 CG7960-RA 110..575 69..534 425 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1639995..1640636 17..658 3210 100 Plus
3L 28110227 3L 1647978..1648443 69..534 425 72.7 Plus
Blast to na_te.dros performed 2014-11-28 00:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 3766..3819 65..12 108 66.7 Minus

BS01028.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:47 Download gff for BS01028.complete
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:08 Download gff for BS01028.complete
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 288..943 11..665 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:46 Download gff for BS01028.complete
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 285..926 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:47 Download gff for BS01028.complete
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 288..943 11..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:36 Download gff for BS01028.complete
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 285..926 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:36 Download gff for BS01028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1639995..1640636 17..660 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:46 Download gff for BS01028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1639995..1640636 17..660 99   Plus

BS01028.pep Sequence

Translation from 16 to 657

> BS01028.pep
MMNEAALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRL
SRESEVRYTGYRERSIEERQVRFMNGCREGHTEASFVASGTNLQLVFNAN
QNPYLHDKECDFDKEHGKVHIKSYFIMNGVCVRFRGWIDLERLDGVGCLE
YDERRAMHEDAILRDQIDRYNQRLREFEDTKRAYRDNRQDEMEAVRRGVA
SGGIGVGASMWRR*

BS01028.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Bgb-PA 213 CG7959-PA 1..213 1..213 1132 100 Plus
Bgb-PB 253 CG7959-PB 1..213 1..213 1132 100 Plus
Bro-PA 213 CG7960-PA 11..202 5..198 684 65.1 Plus