Clone Sequence Records
BS01031.3prime Sequence
731 bp (730 high quality bases) assembled on 2005-11-30
> BS01031.3prime
ATGGTCTAGAAAGCTTCGTTAACTGCTGCTAGTCGGTGGTTCGTTGTGAG
GTCCTTGAAGAAGAGCCTGCAACTTGGCAGCCGCCGGAAATGCACCCAAA
TCCAGTGGCGCTGCTCCCGTGGTGCTTTGTATATAGGCCAAAAGTCTTCT
CAACTCCTCGAGAGCATTTTGCTGCATCAGAATGTAGTTCTTAGCCAGCA
GCAAGGTGGCTATTTTCGACAGCTTTCGCACAGAAGGCGAATGGGCATAG
GGAATCACACTTCTCAGCTCATCAAGGGCATCATTCAAATCGTGCATCCT
TCGTCGTTCCCGGGCATTTATGTTCAGCCTTACCGTCTTTCCCTGGCGGT
TTTTCTGCTTGCCACTGTTGGAGCCACTTCCGCTGGCGCCACCACTGGAC
ACGGCCACCGTGGTGGTGCCACCACTGATGGCAATGGCTGCGATGGCGGC
GGCCGTGGGACTCAATGGCTTCTCCGGAGCACTGGGCCCTGGTTTGTTCT
CATCCGTCGGTGGCTGCTGGGACATGCCCATTCCCTGGGCATAGAAACCA
CCCAGACCAACCGATCCAAGTGGCGTCCGACGGCCGGGGACGCTTTGTGG
TGGGCTGGCGGTGGGTGCTGGATGCTGGCCACCAAGCATATTGGCTGTAG
GAGGTATTGGCATGTGTCCGTGGTTGGGGAGACCGGGAAAACCAAAAGCA
AGATTCGAGGGATCCATGTCGACTGATAACT
BS01031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5545-PA | 699 | Oli-RA | 1..699 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oli-RC | 1068 | CG5545-RC | 101..799 | 717..19 | 3495 | 100 | Minus |
Oli-RB | 1174 | CG5545-RB | 207..905 | 717..19 | 3495 | 100 | Minus |
Oli-RD | 1392 | CG5545-RD | 425..1123 | 717..19 | 3495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17590240..17590811 | 717..146 | 2860 | 100 | Minus |
2L | 23513712 | 2L | 17590870..17590998 | 147..19 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:06:34 has no hits.
BS01031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:43 Download gff for
BS01031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-PA | 1..699 | 19..717 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:06 Download gff for
BS01031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5545-PA | 1..699 | 19..717 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:40:29 Download gff for
BS01031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 839..1537 | 19..717 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:30:57 Download gff for
BS01031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RD | 425..1123 | 19..717 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:30:57 Download gff for
BS01031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17590240..17590811 | 146..717 | 100 | -> | Minus |
2L | 17590872..17590998 | 19..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:40:29 Download gff for
BS01031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17590240..17590811 | 146..717 | 100 | -> | Minus |
arm_2L | 17590872..17590998 | 19..145 | 100 | | Minus |
BS01031.5prime Sequence
731 bp (730 high quality bases) assembled on 2005-11-30
> BS01031.5prime
GAAGTTATCAGTCGACATGGATCCCTCGAATCTTGCTTTTGGTTTTCCCG
GTCTCCCCAACCACGGACACATGCCAATACCTCCTACAGCCAATATGCTT
GGTGGCCAGCATCCAGCACCCACCGCCAGCCCACCACAAAGCGTCCCCGG
CCGTCGGACGCCACTTGGATCGGTTGGTCTGGGTGGTTTCTATGCCCAGG
GAATGGGCATGTCCCAGCAGCCACCGACGGATGAGAACAAACCAGGGCCC
AGTGCTCCGGAGAAGCCATTGAGTCCCACGGCCGCCGCCATCGCAGCCAT
TGCCATCAGTGGTGGCACCACCACGGTGGCCGTGTCCAGTGGTGGCGCCA
GCGGAAGTGGCTCCAACAGTGGCAAGCAGAAAAACCGCCAGGGAAAGACG
GTAAGGCTGAACATAAATGCCCGGGAACGACGAAGGATGCACGATTTGAA
TGATGCCCTTGATGAGCTGAGAAGTGTGATTCCCTATGCCCATTCGCCTT
CTGTGCGAAAGCTGTCGAAAATAGCCACCTTGCTGCTGGCTAAGAACTAC
ATTCTGATGCAGCAAAATGCTCTCGAGGAGTTGAGAAGACTTTTGGCCTA
TATACAAAGCACCACGGGAGCAGCGCCACTGGATTTGGGTGCATTTCCGG
CGGCTGCCAAGTTGCAGGCTCTTCTTCAAGGACCTCACAACGAACCACCG
ACTAGCAGCAGTTAACGAAGCTTTCTAGACC
BS01031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5545-PA | 699 | Oli-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oli-RC | 1068 | CG5545-RC | 101..799 | 17..715 | 3495 | 100 | Plus |
Oli-RB | 1174 | CG5545-RB | 207..905 | 17..715 | 3495 | 100 | Plus |
Oli-RD | 1392 | CG5545-RD | 425..1123 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17590240..17590811 | 17..588 | 2860 | 100 | Plus |
2L | 23513712 | 2L | 17590870..17590998 | 587..715 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:39:06 has no hits.
BS01031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:44 Download gff for
BS01031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-PA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:07 Download gff for
BS01031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5545-PA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:10 Download gff for
BS01031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 839..1537 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:40:27 Download gff for
BS01031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RD | 425..1123 | 17..715 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:40:27 Download gff for
BS01031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17590240..17590811 | 17..588 | 100 | -> | Plus |
2L | 17590872..17590998 | 589..715 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:10 Download gff for
BS01031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17590240..17590811 | 17..588 | 100 | -> | Plus |
arm_2L | 17590872..17590998 | 589..715 | 100 | | Plus |
BS01031.complete Sequence
733 bp (733 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634502
> BS01031.complete
GAAGTTATCAGTCGACATGGATCCCTCGAATCTTGCTTTTGGTTTTCCCG
GTCTCCCCAACCACGGACACATGCCAATACCTCCTACAGCCAATATGCTT
GGTGGCCAGCATCCAGCACCCACCGCCAGCCCACCACAAAGCGTCCCCGG
CCGTCGGACGCCACTTGGATCGGTTGGTCTGGGTGGTTTCTATGCCCAGG
GAATGGGCATGTCCCAGCAGCCACCGACGGATGAGAACAAACCAGGGCCC
AGTGCTCCGGAGAAGCCATTGAGTCCCACGGCCGCCGCCATCGCAGCCAT
TGCCATCAGTGGTGGCACCACCACGGTGGCCGTGTCCAGTGGTGGCGCCA
GCGGAAGTGGCTCCAACAGTGGCAAGCAGAAAAACCGCCAGGGAAAGACG
GTAAGGCTGAACATAAATGCCCGGGAACGACGAAGGATGCACGATTTGAA
TGATGCCCTTGATGAGCTGAGAAGTGTGATTCCCTATGCCCATTCGCCTT
CTGTGCGAAAGCTGTCGAAAATAGCCACCTTGCTGCTGGCTAAGAACTAC
ATTCTGATGCAGCAAAATGCTCTCGAGGAGTTGAGAAGACTTTTGGCCTA
TATACAAAGCACCACGGGAGCAGCGCCACTGGATTTGGGTGCATTTCCGG
CGGCTGCCAAGTTGCAGGCTCTTCTTCAAGGACCTCACAACGAACCACCG
ACTAGCAGCAGTTAACGAAGCTTTCTAGACCAT
BS01031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oli-RC | 699 | CG5545-PC | 1..699 | 17..715 | 3495 | 100 | Plus |
Oli-RB | 699 | CG5545-PB | 1..699 | 17..715 | 3495 | 100 | Plus |
Oli-RD | 699 | CG5545-PD | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oli-RC | 1068 | CG5545-RC | 101..799 | 17..715 | 3495 | 100 | Plus |
Oli-RB | 1174 | CG5545-RB | 207..905 | 17..715 | 3495 | 100 | Plus |
Oli-RD | 1392 | CG5545-RD | 425..1123 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17590240..17590811 | 17..588 | 2860 | 100 | Plus |
2L | 23513712 | 2L | 17590870..17590998 | 587..715 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:54:57 has no hits.
BS01031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:48 Download gff for
BS01031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:09 Download gff for
BS01031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 734..1432 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:37 Download gff for
BS01031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 839..1537 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:48 Download gff for
BS01031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 734..1432 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:36 Download gff for
BS01031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RD | 425..1123 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:36 Download gff for
BS01031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17590240..17590811 | 17..588 | 100 | -> | Plus |
2L | 17590872..17590998 | 589..717 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:37 Download gff for
BS01031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17590240..17590811 | 17..588 | 100 | -> | Plus |
arm_2L | 17590872..17590998 | 589..717 | 98 | | Plus |
BS01031.pep Sequence
Translation from 16 to 714
> BS01031.pep
MDPSNLAFGFPGLPNHGHMPIPPTANMLGGQHPAPTASPPQSVPGRRTPL
GSVGLGGFYAQGMGMSQQPPTDENKPGPSAPEKPLSPTAAAIAAIAISGG
TTTVAVSSGGASGSGSNSGKQKNRQGKTVRLNINARERRRMHDLNDALDE
LRSVIPYAHSPSVRKLSKIATLLLAKNYILMQQNALEELRRLLAYIQSTT
GAAPLDLGAFPAAAKLQALLQGPHNEPPTSSS*
BS01031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oli-PC | 232 | CG5545-PC | 1..232 | 1..232 | 1194 | 100 | Plus |
Oli-PB | 232 | CG5545-PB | 1..232 | 1..232 | 1194 | 100 | Plus |
Oli-PD | 232 | CG5545-PD | 1..232 | 1..232 | 1194 | 100 | Plus |
Oli-PA | 232 | CG5545-PA | 1..232 | 1..232 | 1194 | 100 | Plus |
dimm-PB | 390 | CG8667-PB | 123..206 | 102..180 | 158 | 45.3 | Plus |