Clone BS01031 Report

Search the DGRC for BS01031

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptOli-RA
Protein status:BS01031.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01031.3prime Sequence

731 bp (730 high quality bases) assembled on 2005-11-30

> BS01031.3prime
ATGGTCTAGAAAGCTTCGTTAACTGCTGCTAGTCGGTGGTTCGTTGTGAG
GTCCTTGAAGAAGAGCCTGCAACTTGGCAGCCGCCGGAAATGCACCCAAA
TCCAGTGGCGCTGCTCCCGTGGTGCTTTGTATATAGGCCAAAAGTCTTCT
CAACTCCTCGAGAGCATTTTGCTGCATCAGAATGTAGTTCTTAGCCAGCA
GCAAGGTGGCTATTTTCGACAGCTTTCGCACAGAAGGCGAATGGGCATAG
GGAATCACACTTCTCAGCTCATCAAGGGCATCATTCAAATCGTGCATCCT
TCGTCGTTCCCGGGCATTTATGTTCAGCCTTACCGTCTTTCCCTGGCGGT
TTTTCTGCTTGCCACTGTTGGAGCCACTTCCGCTGGCGCCACCACTGGAC
ACGGCCACCGTGGTGGTGCCACCACTGATGGCAATGGCTGCGATGGCGGC
GGCCGTGGGACTCAATGGCTTCTCCGGAGCACTGGGCCCTGGTTTGTTCT
CATCCGTCGGTGGCTGCTGGGACATGCCCATTCCCTGGGCATAGAAACCA
CCCAGACCAACCGATCCAAGTGGCGTCCGACGGCCGGGGACGCTTTGTGG
TGGGCTGGCGGTGGGTGCTGGATGCTGGCCACCAAGCATATTGGCTGTAG
GAGGTATTGGCATGTGTCCGTGGTTGGGGAGACCGGGAAAACCAAAAGCA
AGATTCGAGGGATCCATGTCGACTGATAACT

BS01031.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5545-PA 699 Oli-RA 1..699 717..19 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Oli-RC 1068 CG5545-RC 101..799 717..19 3495 100 Minus
Oli-RB 1174 CG5545-RB 207..905 717..19 3495 100 Minus
Oli-RD 1392 CG5545-RD 425..1123 717..19 3495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17590240..17590811 717..146 2860 100 Minus
2L 23513712 2L 17590870..17590998 147..19 645 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:06:34 has no hits.

BS01031.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:43 Download gff for BS01031.3prime
Subject Subject Range Query Range Percent Splice Strand
Oli-PA 1..699 19..717 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:06 Download gff for BS01031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5545-PA 1..699 19..717 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:40:29 Download gff for BS01031.3prime
Subject Subject Range Query Range Percent Splice Strand
Oli-RA 839..1537 19..717 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:30:57 Download gff for BS01031.3prime
Subject Subject Range Query Range Percent Splice Strand
Oli-RD 425..1123 19..717 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:30:57 Download gff for BS01031.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17590240..17590811 146..717 100 -> Minus
2L 17590872..17590998 19..145 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:40:29 Download gff for BS01031.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17590240..17590811 146..717 100 -> Minus
arm_2L 17590872..17590998 19..145 100   Minus

BS01031.5prime Sequence

731 bp (730 high quality bases) assembled on 2005-11-30

> BS01031.5prime
GAAGTTATCAGTCGACATGGATCCCTCGAATCTTGCTTTTGGTTTTCCCG
GTCTCCCCAACCACGGACACATGCCAATACCTCCTACAGCCAATATGCTT
GGTGGCCAGCATCCAGCACCCACCGCCAGCCCACCACAAAGCGTCCCCGG
CCGTCGGACGCCACTTGGATCGGTTGGTCTGGGTGGTTTCTATGCCCAGG
GAATGGGCATGTCCCAGCAGCCACCGACGGATGAGAACAAACCAGGGCCC
AGTGCTCCGGAGAAGCCATTGAGTCCCACGGCCGCCGCCATCGCAGCCAT
TGCCATCAGTGGTGGCACCACCACGGTGGCCGTGTCCAGTGGTGGCGCCA
GCGGAAGTGGCTCCAACAGTGGCAAGCAGAAAAACCGCCAGGGAAAGACG
GTAAGGCTGAACATAAATGCCCGGGAACGACGAAGGATGCACGATTTGAA
TGATGCCCTTGATGAGCTGAGAAGTGTGATTCCCTATGCCCATTCGCCTT
CTGTGCGAAAGCTGTCGAAAATAGCCACCTTGCTGCTGGCTAAGAACTAC
ATTCTGATGCAGCAAAATGCTCTCGAGGAGTTGAGAAGACTTTTGGCCTA
TATACAAAGCACCACGGGAGCAGCGCCACTGGATTTGGGTGCATTTCCGG
CGGCTGCCAAGTTGCAGGCTCTTCTTCAAGGACCTCACAACGAACCACCG
ACTAGCAGCAGTTAACGAAGCTTTCTAGACC

BS01031.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5545-PA 699 Oli-RA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Oli-RC 1068 CG5545-RC 101..799 17..715 3495 100 Plus
Oli-RB 1174 CG5545-RB 207..905 17..715 3495 100 Plus
Oli-RD 1392 CG5545-RD 425..1123 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17590240..17590811 17..588 2860 100 Plus
2L 23513712 2L 17590870..17590998 587..715 645 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:39:06 has no hits.

BS01031.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:44 Download gff for BS01031.5prime
Subject Subject Range Query Range Percent Splice Strand
Oli-PA 1..699 17..715 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:07 Download gff for BS01031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5545-PA 1..699 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:10 Download gff for BS01031.5prime
Subject Subject Range Query Range Percent Splice Strand
Oli-RA 839..1537 17..715 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:40:27 Download gff for BS01031.5prime
Subject Subject Range Query Range Percent Splice Strand
Oli-RD 425..1123 17..715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:40:27 Download gff for BS01031.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17590240..17590811 17..588 100 -> Plus
2L 17590872..17590998 589..715 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:10 Download gff for BS01031.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17590240..17590811 17..588 100 -> Plus
arm_2L 17590872..17590998 589..715 100   Plus

BS01031.complete Sequence

733 bp (733 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634502

> BS01031.complete
GAAGTTATCAGTCGACATGGATCCCTCGAATCTTGCTTTTGGTTTTCCCG
GTCTCCCCAACCACGGACACATGCCAATACCTCCTACAGCCAATATGCTT
GGTGGCCAGCATCCAGCACCCACCGCCAGCCCACCACAAAGCGTCCCCGG
CCGTCGGACGCCACTTGGATCGGTTGGTCTGGGTGGTTTCTATGCCCAGG
GAATGGGCATGTCCCAGCAGCCACCGACGGATGAGAACAAACCAGGGCCC
AGTGCTCCGGAGAAGCCATTGAGTCCCACGGCCGCCGCCATCGCAGCCAT
TGCCATCAGTGGTGGCACCACCACGGTGGCCGTGTCCAGTGGTGGCGCCA
GCGGAAGTGGCTCCAACAGTGGCAAGCAGAAAAACCGCCAGGGAAAGACG
GTAAGGCTGAACATAAATGCCCGGGAACGACGAAGGATGCACGATTTGAA
TGATGCCCTTGATGAGCTGAGAAGTGTGATTCCCTATGCCCATTCGCCTT
CTGTGCGAAAGCTGTCGAAAATAGCCACCTTGCTGCTGGCTAAGAACTAC
ATTCTGATGCAGCAAAATGCTCTCGAGGAGTTGAGAAGACTTTTGGCCTA
TATACAAAGCACCACGGGAGCAGCGCCACTGGATTTGGGTGCATTTCCGG
CGGCTGCCAAGTTGCAGGCTCTTCTTCAAGGACCTCACAACGAACCACCG
ACTAGCAGCAGTTAACGAAGCTTTCTAGACCAT

BS01031.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Oli-RC 699 CG5545-PC 1..699 17..715 3495 100 Plus
Oli-RB 699 CG5545-PB 1..699 17..715 3495 100 Plus
Oli-RD 699 CG5545-PD 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Oli-RC 1068 CG5545-RC 101..799 17..715 3495 100 Plus
Oli-RB 1174 CG5545-RB 207..905 17..715 3495 100 Plus
Oli-RD 1392 CG5545-RD 425..1123 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17590240..17590811 17..588 2860 100 Plus
2L 23513712 2L 17590870..17590998 587..715 645 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:54:57 has no hits.

BS01031.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:48 Download gff for BS01031.complete
Subject Subject Range Query Range Percent Splice Strand
Oli-RA 1..699 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:09 Download gff for BS01031.complete
Subject Subject Range Query Range Percent Splice Strand
Oli-RA 734..1432 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:37 Download gff for BS01031.complete
Subject Subject Range Query Range Percent Splice Strand
Oli-RA 839..1537 17..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:48 Download gff for BS01031.complete
Subject Subject Range Query Range Percent Splice Strand
Oli-RA 734..1432 17..715 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:36 Download gff for BS01031.complete
Subject Subject Range Query Range Percent Splice Strand
Oli-RD 425..1123 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:36 Download gff for BS01031.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17590240..17590811 17..588 100 -> Plus
2L 17590872..17590998 589..717 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:37 Download gff for BS01031.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17590240..17590811 17..588 100 -> Plus
arm_2L 17590872..17590998 589..717 98   Plus

BS01031.pep Sequence

Translation from 16 to 714

> BS01031.pep
MDPSNLAFGFPGLPNHGHMPIPPTANMLGGQHPAPTASPPQSVPGRRTPL
GSVGLGGFYAQGMGMSQQPPTDENKPGPSAPEKPLSPTAAAIAAIAISGG
TTTVAVSSGGASGSGSNSGKQKNRQGKTVRLNINARERRRMHDLNDALDE
LRSVIPYAHSPSVRKLSKIATLLLAKNYILMQQNALEELRRLLAYIQSTT
GAAPLDLGAFPAAAKLQALLQGPHNEPPTSSS*

BS01031.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Oli-PC 232 CG5545-PC 1..232 1..232 1194 100 Plus
Oli-PB 232 CG5545-PB 1..232 1..232 1194 100 Plus
Oli-PD 232 CG5545-PD 1..232 1..232 1194 100 Plus
Oli-PA 232 CG5545-PA 1..232 1..232 1194 100 Plus
dimm-PB 390 CG8667-PB 123..206 102..180 158 45.3 Plus