Clone BS01034 Report

Search the DGRC for BS01034

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG5846-RA
Protein status:BS01034.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01034.3prime Sequence

737 bp (736 high quality bases) assembled on 2005-11-30

> BS01034.3prime
ATGGTCTAGAAAGCTTCGTTAAATACTACCGAAGGCTCCCGCTGTGATTA
TGGCCGTCATGTACTGCTCCAGTAGCGCCTGCGCCAGATGAGCCCCATGC
TCTACGGCCAGCGAGTAGGCCGTGTCTCCGTCCTCGTTGGTGGCACTTAG
ATCCAGGTCTTTGGCCAGGAGCTCGTTGCAAGTATGCGGATGATTGCCGG
CCGCTGCGTACATAAGCGCCGTGTTTCCAACGATGTCCATGTGGCCCGAA
TCAGCGCCGTGTTCCAGCAAGAAGCGGACGATCTCGTTATGCCCACCGGC
GGCAGCTAGGAGTAGAGGACTAATCAAATCTGGAGCCATAGTGTTCACAT
TGGCACCAGCCGCGACGAGGAGCTGCACGGAAACCAGTTGACCGTAGGAG
GCTGCCCAATGTAAGGCTGTGAAACCATGTGCATCCTTGTAATCAATGTT
CTGCTGACGCGCTCTTTCCGCTGCCACCTGCTCCTCCGTGATCTCGCCTT
GGCCAGCGCGTTCGTGAAAGGAGAGCGAAACTTCGACGGGGCAAAAGGTG
GCCTCCGTATTGCCGCGCTGCAAGTTGGTCAGCACGGTGGACTGGGGGCG
GTACGGCAAGAAGGCGCTCTTCCGCTTGGCGTCCAGCACCAGCATGGAGG
TAGGCGCCGACCGCACTCCCTCATCGTCGTCGGAATTCGCATTAGTTTGG
ATTGTGTTTGCTGGTGCCACCATGTCGACTGATAACT

BS01034.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5846-PA 705 CG5846-RA 1..705 723..19 3525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5846-RB 952 CG5846-RB 171..875 723..19 3525 100 Minus
CG5846-RA 845 CG5846-RA 27..731 723..19 3525 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9956289..9956993 19..723 3525 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:46:13 has no hits.

BS01034.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:50 Download gff for BS01034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5846-PA 1..705 19..723 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:14 Download gff for BS01034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5846-PA 1..705 19..723 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:58 Download gff for BS01034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5846-RA 27..737 13..723 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:04:10 Download gff for BS01034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5846-RA 27..737 13..723 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:04:10 Download gff for BS01034.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9956283..9956995 13..724 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:58 Download gff for BS01034.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9956283..9956995 13..724 99 -> Plus

BS01034.5prime Sequence

737 bp (736 high quality bases) assembled on 2005-11-30

> BS01034.5prime
GAAGTTATCAGTCGACATGGTGGCACCAGCAAACACAATCCAAACTAATG
CGAATTCCGACGACGATGAGGGAGTGCGGTCGGCGCCTACCTCCATGCTG
GTGCTGGACGCCAAGCGGAAGAGCGCCTTCTTGCCGTACCGCCCCCAGTC
CACCGTGCTGACCAACTTGCAGCGCGGCAATACGGAGGCCACCTTTTGCC
CCGTCGAAGTTTCGCTCTCCTTTCACGAACGCGCTGGCCAAGGCGAGATC
ACGGAGGAGCAGGTGGCAGCGGAAAGAGCGCGTCAGCAGAACATTGATTA
CAAGGATGCACATGGTTTCACAGCCTTACATTGGGCAGCCTCCTACGGTC
AACTGGTTTCCGTGCAGCTCCTCGTCGCGGCTGGTGCCAATGTGAACACT
ATGGCTCCAGATTTGATTAGTCCTCTACTCCTAGCTGCCGCCGGTGGGCA
TAACGAGATCGTCCGCTTCTTGCTGGAACACGGCGCTGATTCGGGCCACA
TGGACATCGTTGGAAACACGGCGCTTATGTACGCAGCGGCCGGCAATCAT
CCGCATACTTGCAACGAGCTCCTGGCCAAAGACCTGGATCTAAGTGCCAC
CAACGAGGACGGAGACACGGCCTACTCGCTGGCCGTAGAGCATGGGGCTC
ATCTGGCGCAGGCGCTACTGGAGCAGTACATGACGGCCATAATCACAGCG
GGAGCCTTCGGTAGTATTTAACGAAGCTTTCTAGACC

BS01034.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5846-PA 705 CG5846-RA 1..705 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5846-RB 952 CG5846-RB 171..875 17..721 3525 100 Plus
CG5846-RA 845 CG5846-RA 27..731 17..721 3525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9956289..9956993 721..17 3525 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:31:49 has no hits.

BS01034.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:51 Download gff for BS01034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5846-PA 1..705 17..721 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:16 Download gff for BS01034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5846-PA 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:21:24 Download gff for BS01034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5846-RA 27..737 17..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:07 Download gff for BS01034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5846-RA 27..737 17..727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:07 Download gff for BS01034.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9956283..9956995 16..727 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:21:24 Download gff for BS01034.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9956283..9956995 16..727 99 -> Minus

BS01034.complete Sequence

739 bp (739 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634503

> BS01034.complete
GAAGTTATCAGTCGACATGGTGGCACCAGCAAACACAATCCAAACTAATG
CGAATTCCGACGACGATGAGGGAGTGCGGTCGGCGCCTACCTCCATGCTG
GTGCTGGACGCCAAGCGGAAGAGCGCCTTCTTGCCGTACCGCCCCCAGTC
CACCGTGCTGACCAACTTGCAGCGCGGCAATACGGAGGCCACCTTTTGCC
CCGTCGAAGTTTCGCTCTCCTTTCACGAACGCGCTGGCCAAGGCGAGATC
ACGGAGGAGCAGGTGGCAGCGGAAAGAGCGCGTCAGCAGAACATTGATTA
CAAGGATGCACATGGTTTCACAGCCTTACATTGGGCAGCCTCCTACGGTC
AACTGGTTTCCGTGCAGCTCCTCGTCGCGGCTGGTGCCAATGTGAACACT
ATGGCTCCAGATTTGATTAGTCCTCTACTCCTAGCTGCCGCCGGTGGGCA
TAACGAGATCGTCCGCTTCTTGCTGGAACACGGCGCTGATTCGGGCCACA
TGGACATCGTTGGAAACACGGCGCTTATGTACGCAGCGGCCGGCAATCAT
CCGCATACTTGCAACGAGCTCCTGGCCAAAGACCTGGATCTAAGTGCCAC
CAACGAGGACGGAGACACGGCCTACTCGCTGGCCGTAGAGCATGGGGCTC
ATCTGGCGCAGGCGCTACTGGAGCAGTACATGACGGCCATAATCACAGCG
GGAGCCTTCGGTAGTATTTAACGAAGCTTTCTAGACCAT

BS01034.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5846-RB 705 CG5846-PB 1..705 17..721 3525 100 Plus
CG5846-RA 705 CG5846-PA 1..705 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5846-RB 952 CG5846-RB 171..875 17..721 3525 100 Plus
CG5846-RA 845 CG5846-RA 27..731 17..721 3525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9956289..9956993 721..17 3525 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:03:19 has no hits.

BS01034.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:41 Download gff for BS01034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5846-RA 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:10 Download gff for BS01034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5846-RA 815..1525 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:19 Download gff for BS01034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5846-RA 27..731 17..723 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:41 Download gff for BS01034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5846-RA 815..1525 17..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:17 Download gff for BS01034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5846-RA 27..731 17..723 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:17 Download gff for BS01034.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9956286..9956993 17..723 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:19 Download gff for BS01034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9956286..9956993 17..723 99   Minus

BS01034.pep Sequence

Translation from 16 to 720

> BS01034.pep
MVAPANTIQTNANSDDDEGVRSAPTSMLVLDAKRKSAFLPYRPQSTVLTN
LQRGNTEATFCPVEVSLSFHERAGQGEITEEQVAAERARQQNIDYKDAHG
FTALHWAASYGQLVSVQLLVAAGANVNTMAPDLISPLLLAAAGGHNEIVR
FLLEHGADSGHMDIVGNTALMYAAAGNHPHTCNELLAKDLDLSATNEDGD
TAYSLAVEHGAHLAQALLEQYMTAIITAGAFGSI*

BS01034.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5846-PB 234 CG5846-PB 1..234 1..234 1192 100 Plus
CG5846-PA 234 CG5846-PA 1..234 1..234 1192 100 Plus
Ilk-PA 448 CG10504-PA 31..154 97..220 177 35.7 Plus
CG42672-PL 1476 CG42672-PL 146..293 73..221 165 32.7 Plus
CG42672-PD 1478 CG42672-PD 146..293 73..221 165 32.7 Plus