Clone Sequence Records
BS01034.3prime Sequence
737 bp (736 high quality bases) assembled on 2005-11-30
> BS01034.3prime
ATGGTCTAGAAAGCTTCGTTAAATACTACCGAAGGCTCCCGCTGTGATTA
TGGCCGTCATGTACTGCTCCAGTAGCGCCTGCGCCAGATGAGCCCCATGC
TCTACGGCCAGCGAGTAGGCCGTGTCTCCGTCCTCGTTGGTGGCACTTAG
ATCCAGGTCTTTGGCCAGGAGCTCGTTGCAAGTATGCGGATGATTGCCGG
CCGCTGCGTACATAAGCGCCGTGTTTCCAACGATGTCCATGTGGCCCGAA
TCAGCGCCGTGTTCCAGCAAGAAGCGGACGATCTCGTTATGCCCACCGGC
GGCAGCTAGGAGTAGAGGACTAATCAAATCTGGAGCCATAGTGTTCACAT
TGGCACCAGCCGCGACGAGGAGCTGCACGGAAACCAGTTGACCGTAGGAG
GCTGCCCAATGTAAGGCTGTGAAACCATGTGCATCCTTGTAATCAATGTT
CTGCTGACGCGCTCTTTCCGCTGCCACCTGCTCCTCCGTGATCTCGCCTT
GGCCAGCGCGTTCGTGAAAGGAGAGCGAAACTTCGACGGGGCAAAAGGTG
GCCTCCGTATTGCCGCGCTGCAAGTTGGTCAGCACGGTGGACTGGGGGCG
GTACGGCAAGAAGGCGCTCTTCCGCTTGGCGTCCAGCACCAGCATGGAGG
TAGGCGCCGACCGCACTCCCTCATCGTCGTCGGAATTCGCATTAGTTTGG
ATTGTGTTTGCTGGTGCCACCATGTCGACTGATAACT
BS01034.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5846-PA | 705 | CG5846-RA | 1..705 | 723..19 | 3525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5846-RB | 952 | CG5846-RB | 171..875 | 723..19 | 3525 | 100 | Minus |
CG5846-RA | 845 | CG5846-RA | 27..731 | 723..19 | 3525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9956289..9956993 | 19..723 | 3525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:46:13 has no hits.
BS01034.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:50 Download gff for
BS01034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-PA | 1..705 | 19..723 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:14 Download gff for
BS01034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-PA | 1..705 | 19..723 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:58 Download gff for
BS01034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-RA | 27..737 | 13..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:04:10 Download gff for
BS01034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-RA | 27..737 | 13..723 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:04:10 Download gff for
BS01034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9956283..9956995 | 13..724 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:58 Download gff for
BS01034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9956283..9956995 | 13..724 | 99 | -> | Plus |
BS01034.5prime Sequence
737 bp (736 high quality bases) assembled on 2005-11-30
> BS01034.5prime
GAAGTTATCAGTCGACATGGTGGCACCAGCAAACACAATCCAAACTAATG
CGAATTCCGACGACGATGAGGGAGTGCGGTCGGCGCCTACCTCCATGCTG
GTGCTGGACGCCAAGCGGAAGAGCGCCTTCTTGCCGTACCGCCCCCAGTC
CACCGTGCTGACCAACTTGCAGCGCGGCAATACGGAGGCCACCTTTTGCC
CCGTCGAAGTTTCGCTCTCCTTTCACGAACGCGCTGGCCAAGGCGAGATC
ACGGAGGAGCAGGTGGCAGCGGAAAGAGCGCGTCAGCAGAACATTGATTA
CAAGGATGCACATGGTTTCACAGCCTTACATTGGGCAGCCTCCTACGGTC
AACTGGTTTCCGTGCAGCTCCTCGTCGCGGCTGGTGCCAATGTGAACACT
ATGGCTCCAGATTTGATTAGTCCTCTACTCCTAGCTGCCGCCGGTGGGCA
TAACGAGATCGTCCGCTTCTTGCTGGAACACGGCGCTGATTCGGGCCACA
TGGACATCGTTGGAAACACGGCGCTTATGTACGCAGCGGCCGGCAATCAT
CCGCATACTTGCAACGAGCTCCTGGCCAAAGACCTGGATCTAAGTGCCAC
CAACGAGGACGGAGACACGGCCTACTCGCTGGCCGTAGAGCATGGGGCTC
ATCTGGCGCAGGCGCTACTGGAGCAGTACATGACGGCCATAATCACAGCG
GGAGCCTTCGGTAGTATTTAACGAAGCTTTCTAGACC
BS01034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5846-PA | 705 | CG5846-RA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5846-RB | 952 | CG5846-RB | 171..875 | 17..721 | 3525 | 100 | Plus |
CG5846-RA | 845 | CG5846-RA | 27..731 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9956289..9956993 | 721..17 | 3525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:31:49 has no hits.
BS01034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:51 Download gff for
BS01034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-PA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:16 Download gff for
BS01034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-PA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:21:24 Download gff for
BS01034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-RA | 27..737 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:07 Download gff for
BS01034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-RA | 27..737 | 17..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:07 Download gff for
BS01034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9956283..9956995 | 16..727 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:21:24 Download gff for
BS01034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9956283..9956995 | 16..727 | 99 | -> | Minus |
BS01034.complete Sequence
739 bp (739 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634503
> BS01034.complete
GAAGTTATCAGTCGACATGGTGGCACCAGCAAACACAATCCAAACTAATG
CGAATTCCGACGACGATGAGGGAGTGCGGTCGGCGCCTACCTCCATGCTG
GTGCTGGACGCCAAGCGGAAGAGCGCCTTCTTGCCGTACCGCCCCCAGTC
CACCGTGCTGACCAACTTGCAGCGCGGCAATACGGAGGCCACCTTTTGCC
CCGTCGAAGTTTCGCTCTCCTTTCACGAACGCGCTGGCCAAGGCGAGATC
ACGGAGGAGCAGGTGGCAGCGGAAAGAGCGCGTCAGCAGAACATTGATTA
CAAGGATGCACATGGTTTCACAGCCTTACATTGGGCAGCCTCCTACGGTC
AACTGGTTTCCGTGCAGCTCCTCGTCGCGGCTGGTGCCAATGTGAACACT
ATGGCTCCAGATTTGATTAGTCCTCTACTCCTAGCTGCCGCCGGTGGGCA
TAACGAGATCGTCCGCTTCTTGCTGGAACACGGCGCTGATTCGGGCCACA
TGGACATCGTTGGAAACACGGCGCTTATGTACGCAGCGGCCGGCAATCAT
CCGCATACTTGCAACGAGCTCCTGGCCAAAGACCTGGATCTAAGTGCCAC
CAACGAGGACGGAGACACGGCCTACTCGCTGGCCGTAGAGCATGGGGCTC
ATCTGGCGCAGGCGCTACTGGAGCAGTACATGACGGCCATAATCACAGCG
GGAGCCTTCGGTAGTATTTAACGAAGCTTTCTAGACCAT
BS01034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5846-RB | 705 | CG5846-PB | 1..705 | 17..721 | 3525 | 100 | Plus |
CG5846-RA | 705 | CG5846-PA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5846-RB | 952 | CG5846-RB | 171..875 | 17..721 | 3525 | 100 | Plus |
CG5846-RA | 845 | CG5846-RA | 27..731 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9956289..9956993 | 721..17 | 3525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:03:19 has no hits.
BS01034.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:41 Download gff for
BS01034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-RA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:10 Download gff for
BS01034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-RA | 815..1525 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:19 Download gff for
BS01034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-RA | 27..731 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:41 Download gff for
BS01034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-RA | 815..1525 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:17 Download gff for
BS01034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5846-RA | 27..731 | 17..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:17 Download gff for
BS01034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9956286..9956993 | 17..723 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:19 Download gff for
BS01034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9956286..9956993 | 17..723 | 99 | | Minus |
BS01034.pep Sequence
Translation from 16 to 720
> BS01034.pep
MVAPANTIQTNANSDDDEGVRSAPTSMLVLDAKRKSAFLPYRPQSTVLTN
LQRGNTEATFCPVEVSLSFHERAGQGEITEEQVAAERARQQNIDYKDAHG
FTALHWAASYGQLVSVQLLVAAGANVNTMAPDLISPLLLAAAGGHNEIVR
FLLEHGADSGHMDIVGNTALMYAAAGNHPHTCNELLAKDLDLSATNEDGD
TAYSLAVEHGAHLAQALLEQYMTAIITAGAFGSI*
BS01034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5846-PB | 234 | CG5846-PB | 1..234 | 1..234 | 1192 | 100 | Plus |
CG5846-PA | 234 | CG5846-PA | 1..234 | 1..234 | 1192 | 100 | Plus |
Ilk-PA | 448 | CG10504-PA | 31..154 | 97..220 | 177 | 35.7 | Plus |
CG42672-PL | 1476 | CG42672-PL | 146..293 | 73..221 | 165 | 32.7 | Plus |
CG42672-PD | 1478 | CG42672-PD | 146..293 | 73..221 | 165 | 32.7 | Plus |