Clone Sequence Records
BS01037.3prime Sequence
797 bp (738 high quality bases) assembled on 2005-11-30
> BS01037.3prime
ATGGTCTAGAAAGCTTCGTCAGCTGAAACCCTCGCTCGACTCCTGCTCCA
TGGCCTGAAGTTCCTGTTTTTCCATAGCCTCCTGCGCCATTTGCTGCAAG
GTACGACTGAGTATGTTGCGCAGGATGTGCGGCTTGCAGTGCTCCTCCAG
CCAGGGGATAATGCCGGTGGTCAGCTGCTTAAAGTTCTCCATGGGTATGT
GTTGAAATGTCTCGAACATTTCCTCCATAATTGCCTGGAACACTTGAAAC
TTGGCCTCATCGGTGAGGCGTGCCTCCTCCGGCCCTGGATTCGCCTGCTG
ATGCTGTAGCATGTTCTCATAGCCGTTCTTAATGATCCGTAACGCTGTTA
CCTCCTTCTGTAGCGCCGATCCCTCGTCCTCCTGCTTGAGTTTCTGCTGG
TTAAGGTAGCCAATGTATTCGATGGACTTCTGCAGGATCAGAGCCTTGCT
GAGCTTGTAGCCGGAGGAGTCGTTGGGCTGGCAGCGCGGCACCAGCTCCT
GCAGACTGTCGTAGCCCTTCTTGATGGCATCGCGCCGCTTCTGCTCCGCC
TGGGTGTGCGCCTCCCTTCTCCGCTCCTTGTAACTCAGCGTGGAATTGGC
GGCCGCGGAATGGCGCGCATCGCCGCTATCGTCGTCGTCGTCTGAATTGT
GCGCCGAGGAGTTCGGAGTGTGCGTGCTGCCCGCACTGCTGCACCGCGAG
TAGTGCTTGCTGGTGTGGTCCTGGTCGTGCTCCATGCCGAAAACGTCTTC
CTTGGTGGCCAACGCGTTGTTATTATCGCTCATGTCGACTGATAACT
BS01037.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3350-PA | 765 | bigmax-RA | 1..765 | 783..19 | 3725 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bigmax-RA | 954 | CG3350-RA | 49..822 | 791..19 | 3770 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27287785..27288188 | 241..644 | 1975 | 99.3 | Plus |
3R | 32079331 | 3R | 27287498..27287720 | 19..241 | 1100 | 99.6 | Plus |
3R | 32079331 | 3R | 27288328..27288469 | 642..783 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:40:44 has no hits.
BS01037.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:56 Download gff for
BS01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3350-PA | 1..765 | 19..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:23 Download gff for
BS01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3350-PA | 1..765 | 19..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:07:21 Download gff for
BS01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 49..828 | 13..791 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:18:06 Download gff for
BS01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 49..828 | 13..791 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:18:06 Download gff for
BS01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27287785..27288185 | 241..641 | 99 | <- | Plus |
3R | 27287492..27287719 | 13..240 | 98 | <- | Plus |
3R | 27288328..27288478 | 642..791 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:07:21 Download gff for
BS01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23113214..23113441 | 13..240 | 98 | <- | Plus |
arm_3R | 23113507..23113907 | 241..641 | 99 | <- | Plus |
arm_3R | 23114050..23114200 | 642..791 | 98 | | Plus |
BS01037.5prime Sequence
797 bp (705 high quality bases) assembled on 2005-11-30
> BS01037.5prime
GAAGTTATCAGTCGACATGAGCGATAATAACAACGCGTTGGCCACCAAGG
AAGACGTTTTCGGCATGGAGCACGACCAGGACCACACCAGCAAGCACTAC
TCGCGGTGCAGCAGTGCGGGCAGCACGCACACTCCGAACTCCTCGGCGCA
CAATTCAGACGACGACGACGATAGCGGCGATGCGCGCCATTCCGCGGCCG
CCAATTCCACGCTGAGTTACAAGGAGCGGAGAAGGGAGGCGCACACCCAG
GCGGAGCAGAAGCGGCGCGATGCCATCAAGAAGGGCTACGACAGTCTGCA
GGAGCTGGTGCCGCGCTGCCAGCCCAACGACTCCTCCGGCTACAAGCTCA
GCAAGGCTCTGATCCTGCAGAAGTCCATCGAATACATTGGCTACCTTAAC
CAGCAGAAACTCAAGCAGGAGGACGAGGGATCGGCGCTACAGAAGGAGGT
AACAGCGTTACGGATCATTAAGAACGGCTATGAGAACATGCTACAGCATC
AGCAGGCGAATCCAGGGCCGGAGGAGGCACGCCTCACCGATGAGGCCAAG
TTTCAAGTGTTCCAGGCAATTATGGAGGAAATGTTCGAGACATTTCAACA
CATACCCATGGAGAACTTTAAGCAGCTGACCACCGGCATTATCCCCTGGC
TGGAGGAGCACTGCAAGCCGCACATCCTGCGCAACATACTCAGTCGTACC
TTGCAGCAAATGGCGCAGGAGGCTATGGAAAAACAGGAACTTCAGGCCAT
GGAGCAGGAGTCGAGCGAGGGTTTCAGCTGACGAAGCTTTCTAGACC
BS01037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3350-PA | 765 | bigmax-RA | 1..765 | 17..781 | 3725 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bigmax-RA | 954 | CG3350-RA | 49..822 | 9..781 | 3770 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27287785..27288188 | 559..156 | 1975 | 99.3 | Minus |
3R | 32079331 | 3R | 27287498..27287720 | 781..559 | 1100 | 99.6 | Minus |
3R | 32079331 | 3R | 27288328..27288469 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:55:36 has no hits.
BS01037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:57 Download gff for
BS01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3350-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:25 Download gff for
BS01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3350-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:33:27 Download gff for
BS01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 49..828 | 9..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:03:28 Download gff for
BS01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 49..828 | 9..787 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:03:28 Download gff for
BS01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27287492..27287719 | 560..787 | 98 | <- | Minus |
3R | 27287785..27288185 | 159..559 | 99 | <- | Minus |
3R | 27288328..27288478 | 9..158 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:33:27 Download gff for
BS01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23114050..23114200 | 9..158 | 98 | | Minus |
arm_3R | 23113507..23113907 | 159..559 | 99 | <- | Minus |
arm_3R | 23113214..23113441 | 560..787 | 98 | <- | Minus |
BS01037.complete Sequence
799 bp (799 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634504
> BS01037.complete
GAAGTTATCAGTCGACATGAGCGATAATAACAACGCGTTGGCCACCAAGG
AAGACGTTTTCGGCATGGAGCACGACCAGGACCACACCAGCAAGCACTAC
TCGCGGTGCAGCAGTGCGGGCAGCACGCACACTCCGAACTCCTCGGCGCA
CAATTCAGACGACGACGACGATAGCGGCGATGCGCGCCATTCCGCGGCCG
CCAATTCCACGCTGAGTTACAAGGAGCGGAGAAGGGAGGCGCACACCCAG
GCGGAGCAGAAGCGGCGCGATGCCATCAAGAAGGGCTACGACAGTCTGCA
GGAGCTGGTGCCGCGCTGCCAGCCCAACGACTCCTCCGGCTACAAGCTCA
GCAAGGCTCTGATCCTGCAGAAGTCCATCGAATACATTGGCTACCTTAAC
CAGCAGAAACTCAAGCAGGAGGACGAGGGATCGGCGCTACAGAAGGAGGT
AACAGCGTTACGGATCATTAAGAACGGCTATGAGAACATGCTACAGCATC
AGCAGGCGAATCCAGGGCCGGAGGAGGCACGCCTCACCGATGAGGCCAAG
TTTCAAGTGTTCCAGGCAATTATGGAGGAAATGTTCGAGACATTTCAACA
CATACCCATGGAGAACTTTAAGCAGCTGACCACCGGCATTATCCCCTGGC
TGGAGGAGCACTGCAAGCCGCACATCCTGCGCAACATACTCAGTCGTACC
TTGCAGCAAATGGCGCAGGAGGCTATGGAAAAACAGGAACTTCAGGCCAT
GGAGCAGGAGTCGAGCGAGGGTTTCAGCTGACGAAGCTTTCTAGACCAT
BS01037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bigmax-RA | 765 | CG3350-PA | 1..765 | 17..781 | 3765 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bigmax-RA | 954 | CG3350-RA | 58..822 | 17..781 | 3765 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27287785..27288188 | 559..156 | 1975 | 99.3 | Minus |
3R | 32079331 | 3R | 27287498..27287720 | 781..559 | 1100 | 99.6 | Minus |
3R | 32079331 | 3R | 27288328..27288469 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:57:49 has no hits.
BS01037.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:29 Download gff for
BS01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:46 Download gff for
BS01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 18..797 | 9..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:17 Download gff for
BS01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 58..825 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:29 Download gff for
BS01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 18..797 | 9..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:11 Download gff for
BS01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 58..825 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:11 Download gff for
BS01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27287495..27287719 | 560..783 | 99 | <- | Minus |
3R | 27287785..27288185 | 159..559 | 99 | <- | Minus |
3R | 27288328..27288469 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:17 Download gff for
BS01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23113217..23113441 | 560..783 | 99 | <- | Minus |
arm_3R | 23113507..23113907 | 159..559 | 99 | <- | Minus |
arm_3R | 23114050..23114191 | 17..158 | 100 | | Minus |
BS01037.pep Sequence
Translation from 16 to 780
> BS01037.pep
MSDNNNALATKEDVFGMEHDQDHTSKHYSRCSSAGSTHTPNSSAHNSDDD
DDSGDARHSAAANSTLSYKERRREAHTQAEQKRRDAIKKGYDSLQELVPR
CQPNDSSGYKLSKALILQKSIEYIGYLNQQKLKQEDEGSALQKEVTALRI
IKNGYENMLQHQQANPGPEEARLTDEAKFQVFQAIMEEMFETFQHIPMEN
FKQLTTGIIPWLEEHCKPHILRNILSRTLQQMAQEAMEKQELQAMEQESS
EGFS*
BS01037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bigmax-PA | 254 | CG3350-PA | 1..254 | 1..254 | 1318 | 100 | Plus |
Mio-PE | 925 | CG18362-PE | 690..891 | 39..233 | 173 | 26.9 | Plus |
Mio-PM | 1119 | CG18362-PM | 884..1085 | 39..233 | 173 | 26.9 | Plus |
Mio-PL | 1119 | CG18362-PL | 884..1085 | 39..233 | 173 | 26.9 | Plus |
Mio-PK | 1119 | CG18362-PK | 884..1085 | 39..233 | 173 | 26.9 | Plus |