Clone BS01037 Report

Search the DGRC for BS01037

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:37
Vector:pDNR-Dual
Associated Gene/Transcriptbigmax-RA
Protein status:BS01037.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01037.3prime Sequence

797 bp (738 high quality bases) assembled on 2005-11-30

> BS01037.3prime
ATGGTCTAGAAAGCTTCGTCAGCTGAAACCCTCGCTCGACTCCTGCTCCA
TGGCCTGAAGTTCCTGTTTTTCCATAGCCTCCTGCGCCATTTGCTGCAAG
GTACGACTGAGTATGTTGCGCAGGATGTGCGGCTTGCAGTGCTCCTCCAG
CCAGGGGATAATGCCGGTGGTCAGCTGCTTAAAGTTCTCCATGGGTATGT
GTTGAAATGTCTCGAACATTTCCTCCATAATTGCCTGGAACACTTGAAAC
TTGGCCTCATCGGTGAGGCGTGCCTCCTCCGGCCCTGGATTCGCCTGCTG
ATGCTGTAGCATGTTCTCATAGCCGTTCTTAATGATCCGTAACGCTGTTA
CCTCCTTCTGTAGCGCCGATCCCTCGTCCTCCTGCTTGAGTTTCTGCTGG
TTAAGGTAGCCAATGTATTCGATGGACTTCTGCAGGATCAGAGCCTTGCT
GAGCTTGTAGCCGGAGGAGTCGTTGGGCTGGCAGCGCGGCACCAGCTCCT
GCAGACTGTCGTAGCCCTTCTTGATGGCATCGCGCCGCTTCTGCTCCGCC
TGGGTGTGCGCCTCCCTTCTCCGCTCCTTGTAACTCAGCGTGGAATTGGC
GGCCGCGGAATGGCGCGCATCGCCGCTATCGTCGTCGTCGTCTGAATTGT
GCGCCGAGGAGTTCGGAGTGTGCGTGCTGCCCGCACTGCTGCACCGCGAG
TAGTGCTTGCTGGTGTGGTCCTGGTCGTGCTCCATGCCGAAAACGTCTTC
CTTGGTGGCCAACGCGTTGTTATTATCGCTCATGTCGACTGATAACT

BS01037.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3350-PA 765 bigmax-RA 1..765 783..19 3725 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
bigmax-RA 954 CG3350-RA 49..822 791..19 3770 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27287785..27288188 241..644 1975 99.3 Plus
3R 32079331 3R 27287498..27287720 19..241 1100 99.6 Plus
3R 32079331 3R 27288328..27288469 642..783 710 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:40:44 has no hits.

BS01037.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:56 Download gff for BS01037.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3350-PA 1..765 19..783 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:23 Download gff for BS01037.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3350-PA 1..765 19..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:07:21 Download gff for BS01037.3prime
Subject Subject Range Query Range Percent Splice Strand
bigmax-RA 49..828 13..791 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:18:06 Download gff for BS01037.3prime
Subject Subject Range Query Range Percent Splice Strand
bigmax-RA 49..828 13..791 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:18:06 Download gff for BS01037.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27287785..27288185 241..641 99 <- Plus
3R 27287492..27287719 13..240 98 <- Plus
3R 27288328..27288478 642..791 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:07:21 Download gff for BS01037.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23113214..23113441 13..240 98 <- Plus
arm_3R 23113507..23113907 241..641 99 <- Plus
arm_3R 23114050..23114200 642..791 98   Plus

BS01037.5prime Sequence

797 bp (705 high quality bases) assembled on 2005-11-30

> BS01037.5prime
GAAGTTATCAGTCGACATGAGCGATAATAACAACGCGTTGGCCACCAAGG
AAGACGTTTTCGGCATGGAGCACGACCAGGACCACACCAGCAAGCACTAC
TCGCGGTGCAGCAGTGCGGGCAGCACGCACACTCCGAACTCCTCGGCGCA
CAATTCAGACGACGACGACGATAGCGGCGATGCGCGCCATTCCGCGGCCG
CCAATTCCACGCTGAGTTACAAGGAGCGGAGAAGGGAGGCGCACACCCAG
GCGGAGCAGAAGCGGCGCGATGCCATCAAGAAGGGCTACGACAGTCTGCA
GGAGCTGGTGCCGCGCTGCCAGCCCAACGACTCCTCCGGCTACAAGCTCA
GCAAGGCTCTGATCCTGCAGAAGTCCATCGAATACATTGGCTACCTTAAC
CAGCAGAAACTCAAGCAGGAGGACGAGGGATCGGCGCTACAGAAGGAGGT
AACAGCGTTACGGATCATTAAGAACGGCTATGAGAACATGCTACAGCATC
AGCAGGCGAATCCAGGGCCGGAGGAGGCACGCCTCACCGATGAGGCCAAG
TTTCAAGTGTTCCAGGCAATTATGGAGGAAATGTTCGAGACATTTCAACA
CATACCCATGGAGAACTTTAAGCAGCTGACCACCGGCATTATCCCCTGGC
TGGAGGAGCACTGCAAGCCGCACATCCTGCGCAACATACTCAGTCGTACC
TTGCAGCAAATGGCGCAGGAGGCTATGGAAAAACAGGAACTTCAGGCCAT
GGAGCAGGAGTCGAGCGAGGGTTTCAGCTGACGAAGCTTTCTAGACC

BS01037.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3350-PA 765 bigmax-RA 1..765 17..781 3725 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
bigmax-RA 954 CG3350-RA 49..822 9..781 3770 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27287785..27288188 559..156 1975 99.3 Minus
3R 32079331 3R 27287498..27287720 781..559 1100 99.6 Minus
3R 32079331 3R 27288328..27288469 158..17 710 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:55:36 has no hits.

BS01037.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:57 Download gff for BS01037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3350-PA 1..765 17..781 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:25 Download gff for BS01037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3350-PA 1..765 17..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:33:27 Download gff for BS01037.5prime
Subject Subject Range Query Range Percent Splice Strand
bigmax-RA 49..828 9..787 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:03:28 Download gff for BS01037.5prime
Subject Subject Range Query Range Percent Splice Strand
bigmax-RA 49..828 9..787 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:03:28 Download gff for BS01037.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27287492..27287719 560..787 98 <- Minus
3R 27287785..27288185 159..559 99 <- Minus
3R 27288328..27288478 9..158 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:33:27 Download gff for BS01037.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23114050..23114200 9..158 98   Minus
arm_3R 23113507..23113907 159..559 99 <- Minus
arm_3R 23113214..23113441 560..787 98 <- Minus

BS01037.complete Sequence

799 bp (799 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634504

> BS01037.complete
GAAGTTATCAGTCGACATGAGCGATAATAACAACGCGTTGGCCACCAAGG
AAGACGTTTTCGGCATGGAGCACGACCAGGACCACACCAGCAAGCACTAC
TCGCGGTGCAGCAGTGCGGGCAGCACGCACACTCCGAACTCCTCGGCGCA
CAATTCAGACGACGACGACGATAGCGGCGATGCGCGCCATTCCGCGGCCG
CCAATTCCACGCTGAGTTACAAGGAGCGGAGAAGGGAGGCGCACACCCAG
GCGGAGCAGAAGCGGCGCGATGCCATCAAGAAGGGCTACGACAGTCTGCA
GGAGCTGGTGCCGCGCTGCCAGCCCAACGACTCCTCCGGCTACAAGCTCA
GCAAGGCTCTGATCCTGCAGAAGTCCATCGAATACATTGGCTACCTTAAC
CAGCAGAAACTCAAGCAGGAGGACGAGGGATCGGCGCTACAGAAGGAGGT
AACAGCGTTACGGATCATTAAGAACGGCTATGAGAACATGCTACAGCATC
AGCAGGCGAATCCAGGGCCGGAGGAGGCACGCCTCACCGATGAGGCCAAG
TTTCAAGTGTTCCAGGCAATTATGGAGGAAATGTTCGAGACATTTCAACA
CATACCCATGGAGAACTTTAAGCAGCTGACCACCGGCATTATCCCCTGGC
TGGAGGAGCACTGCAAGCCGCACATCCTGCGCAACATACTCAGTCGTACC
TTGCAGCAAATGGCGCAGGAGGCTATGGAAAAACAGGAACTTCAGGCCAT
GGAGCAGGAGTCGAGCGAGGGTTTCAGCTGACGAAGCTTTCTAGACCAT

BS01037.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
bigmax-RA 765 CG3350-PA 1..765 17..781 3765 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
bigmax-RA 954 CG3350-RA 58..822 17..781 3765 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27287785..27288188 559..156 1975 99.3 Minus
3R 32079331 3R 27287498..27287720 781..559 1100 99.6 Minus
3R 32079331 3R 27288328..27288469 158..17 710 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:57:49 has no hits.

BS01037.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:29 Download gff for BS01037.complete
Subject Subject Range Query Range Percent Splice Strand
bigmax-RA 1..765 17..781 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:46 Download gff for BS01037.complete
Subject Subject Range Query Range Percent Splice Strand
bigmax-RA 18..797 9..787 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:17 Download gff for BS01037.complete
Subject Subject Range Query Range Percent Splice Strand
bigmax-RA 58..825 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:29 Download gff for BS01037.complete
Subject Subject Range Query Range Percent Splice Strand
bigmax-RA 18..797 9..787 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:11 Download gff for BS01037.complete
Subject Subject Range Query Range Percent Splice Strand
bigmax-RA 58..825 17..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:11 Download gff for BS01037.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27287495..27287719 560..783 99 <- Minus
3R 27287785..27288185 159..559 99 <- Minus
3R 27288328..27288469 17..158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:17 Download gff for BS01037.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23113217..23113441 560..783 99 <- Minus
arm_3R 23113507..23113907 159..559 99 <- Minus
arm_3R 23114050..23114191 17..158 100   Minus

BS01037.pep Sequence

Translation from 16 to 780

> BS01037.pep
MSDNNNALATKEDVFGMEHDQDHTSKHYSRCSSAGSTHTPNSSAHNSDDD
DDSGDARHSAAANSTLSYKERRREAHTQAEQKRRDAIKKGYDSLQELVPR
CQPNDSSGYKLSKALILQKSIEYIGYLNQQKLKQEDEGSALQKEVTALRI
IKNGYENMLQHQQANPGPEEARLTDEAKFQVFQAIMEEMFETFQHIPMEN
FKQLTTGIIPWLEEHCKPHILRNILSRTLQQMAQEAMEKQELQAMEQESS
EGFS*

BS01037.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
bigmax-PA 254 CG3350-PA 1..254 1..254 1318 100 Plus
Mio-PE 925 CG18362-PE 690..891 39..233 173 26.9 Plus
Mio-PM 1119 CG18362-PM 884..1085 39..233 173 26.9 Plus
Mio-PL 1119 CG18362-PL 884..1085 39..233 173 26.9 Plus
Mio-PK 1119 CG18362-PK 884..1085 39..233 173 26.9 Plus