Clone Sequence Records
BS01042.3prime Sequence
806 bp (777 high quality bases) assembled on 2005-11-30
> BS01042.3prime
ATGGTCTAGAAAGCTTCGCTATATATCTTTGGAGGCCAGCGTCTTGCGGG
GCTTTGGCTCAGGTGGATCGATAAGATTTCCGTGACGCACCACGTCGATG
TGGCCCAGGCGGATCATCTTCTCCTCCCAAACGGAAATCGCTTTCCTGTA
GAGCTCCATCTCCTTGCGCGACTCCTGCATGTAGACCTCCTTCTCGGAGT
CGGAAAGGCGAGTCCACTTGGCGGTGGTCTTTTGGTGCCACTCGCGGTAG
GTTTGCTTGTCGCCCTGCGGAGTGTTGATACGTTCGCTGGCGATGAATCG
CAGGAAGGCCGAAGCGGGCTTTTTGGGTCGCCCCAGCTCCTTGACCCGCT
TGCGCAGCTGGCGGCGCTCCTTGGCGTCAACGAGGTCCTGCTTGAGCTGC
TTGATCTCGGCCCGCTGCTCCTCCGTGAGTGTGGCATCGTACTTTGTTCG
CTCCTCCACGTAGATTTGTTGGTCCCGCTTGAACTCGGCCTGCAGGCGCT
CCTTCAGCTGCGCATCGGCATCGGACCAGTTCTTAGACAGCTGGCGCACC
ACCTCGACGGTGGTAATCTGGGGATTGGCAGCCTTCAGCTTGGGCCGCTG
CTCCCGCATGAAGCGAAAGTAGGGAGTCAGCGGTTTCTTTGGTCGCGGCG
GCAGGCCCAACTGCTCCTCCAGGGTCTTCGACGGCACCGCCGGAGTGTTG
CTGATGCTGGCGGCTGCTAGGGGCCTGACTTTGTTGATCAGCGAGCCGAT
GAGGCCGCCGCGCGAGGACATCAGTGTTGTGGTGTAGATCATGTCGACTG
ATAACT
BS01042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4217-PA | 774 | TFAM-RA | 1..774 | 792..19 | 3870 | 100 | Minus |
CG4217-PB | 855 | TFAM-RB | 148..855 | 726..19 | 3540 | 100 | Minus |
CG4217-PB | 855 | TFAM-RB | 1..70 | 792..723 | 350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TFAM-RA | 1055 | CG4217-RA | 137..911 | 793..19 | 3875 | 100 | Minus |
TFAM-RB | 1242 | CG4217-RB | 285..992 | 726..19 | 3540 | 100 | Minus |
TFAM-RB | 1242 | CG4217-RB | 137..207 | 793..723 | 355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20576145..20576726 | 145..726 | 2910 | 100 | Plus |
3R | 32079331 | 3R | 20575495..20575623 | 19..147 | 645 | 100 | Plus |
3R | 32079331 | 3R | 20576804..20576874 | 723..793 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:01:41 has no hits.
BS01042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:05 Download gff for
BS01042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-PA | 1..774 | 19..792 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:34 Download gff for
BS01042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4217-PA | 1..774 | 19..792 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:13:32 Download gff for
BS01042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 137..922 | 8..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:53:24 Download gff for
BS01042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 137..922 | 8..793 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:53:24 Download gff for
BS01042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20575484..20575621 | 8..145 | 96 | <- | Plus |
3R | 20576146..20576724 | 146..724 | 100 | <- | Plus |
3R | 20576806..20576874 | 725..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:13:32 Download gff for
BS01042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16401206..16401343 | 8..145 | 96 | <- | Plus |
arm_3R | 16401868..16402446 | 146..724 | 100 | <- | Plus |
arm_3R | 16402528..16402596 | 725..793 | 100 | | Plus |
BS01042.5prime Sequence
806 bp (699 high quality bases) assembled on 2005-11-30
> BS01042.5prime
GAAGTTATCAGTCGACATGATCTACACCACAACACTGATGTCCTCGCGCG
GCGGCCTCATCGGCTCGCTGATCAACAAAGTCAGGCCCCTAGCAGCCGCC
AGCATCAGCAACACTCCGGCGGTGCCGTCGAAGACCCTGGAGGAGCAGTT
GGGCCTGCCGCCGCGACCAAAGAAACCGCTGACTCCCTACTTTCGCTTCA
TGCGGGAGCAGCGGCCCAAGCTGAAGGCTGCCAATCCCCAGATTACCACC
GTCGAGGTGGTGCGCCAGCTGTCTAAGAACTGGTCCGATGCCGATGCGCA
GCTGAAGGAGCGCCTGCAGGCCGAGTTCAAGCGGGACCAACAAATCTACG
TGGAGGAGCGAACAAAGTACGATGCCACACTCACGGAGGAGCAGCGGGCC
GAGATCAAGCAGCTCAAGCAGGACCTCGTTGACGCCAAGGAGCGCCGCCA
GCTGCGCAAGCGGGTCAAGGAGCTGGGGCGACCCAAAAAGCCCGCTTCGG
CCTTCCTGCGATTCATCGCCAGCGAACGTATCAACACTCCGCAGGGCGAC
AAGCAAACCTACCGCGAGTGGCACCAAAAGACCACCGCCAAGTGGACTCG
CCTTTCCGACTCCGAGAAGGAGGTCTACATGCAGGAGTCGCGCAAGGAGA
TGGAGCTCTACAGGAAAGCGATTTCCGTTTGGGAGGAGAAGATGATCCGC
CTGGGCCACATCGACGTGGTGCGTCACGGAAATCTTATCGATCCACCTGA
GCCAAAGCCCCGCAAGACGCTGGCCTCCAAAGATATATAGCGAAGCTTTC
TAGACC
BS01042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4217-PA | 774 | TFAM-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG4217-PB | 855 | TFAM-RB | 148..855 | 83..790 | 3540 | 100 | Plus |
CG4217-PB | 855 | TFAM-RB | 1..70 | 17..86 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TFAM-RA | 1055 | CG4217-RA | 137..911 | 16..790 | 3875 | 100 | Plus |
TFAM-RB | 1242 | CG4217-RB | 285..992 | 83..790 | 3540 | 100 | Plus |
TFAM-RB | 1242 | CG4217-RB | 137..207 | 16..86 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20576145..20576726 | 664..83 | 2910 | 100 | Minus |
3R | 32079331 | 3R | 20575495..20575623 | 790..662 | 645 | 100 | Minus |
3R | 32079331 | 3R | 20576804..20576874 | 86..16 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:34:57 has no hits.
BS01042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:06 Download gff for
BS01042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:35 Download gff for
BS01042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4217-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:50:21 Download gff for
BS01042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 137..922 | 16..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:52 Download gff for
BS01042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 137..922 | 16..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:52 Download gff for
BS01042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20575484..20575621 | 664..801 | 96 | <- | Minus |
3R | 20576146..20576724 | 85..663 | 100 | <- | Minus |
3R | 20576806..20576874 | 16..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:50:21 Download gff for
BS01042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16401206..16401343 | 664..801 | 96 | <- | Minus |
arm_3R | 16401868..16402446 | 85..663 | 100 | <- | Minus |
arm_3R | 16402528..16402596 | 16..84 | 100 | | Minus |
BS01042.complete Sequence
808 bp (808 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634506
> BS01042.complete
GAAGTTATCAGTCGACATGATCTACACCACAACACTGATGTCCTCGCGCG
GCGGCCTCATCGGCTCGCTGATCAACAAAGTCAGGCCCCTAGCAGCCGCC
AGCATCAGCAACACTCCGGCGGTGCCGTCGAAGACCCTGGAGGAGCAGTT
GGGCCTGCCGCCGCGACCAAAGAAACCGCTGACTCCCTACTTTCGCTTCA
TGCGGGAGCAGCGGCCCAAGCTGAAGGCTGCCAATCCCCAGATTACCACC
GTCGAGGTGGTGCGCCAGCTGTCTAAGAACTGGTCCGATGCCGATGCGCA
GCTGAAGGAGCGCCTGCAGGCCGAGTTCAAGCGGGACCAACAAATCTACG
TGGAGGAGCGAACAAAGTACGATGCCACACTCACGGAGGAGCAGCGGGCC
GAGATCAAGCAGCTCAAGCAGGACCTCGTTGACGCCAAGGAGCGCCGCCA
GCTGCGCAAGCGGGTCAAGGAGCTGGGGCGACCCAAAAAGCCCGCTTCGG
CCTTCCTGCGATTCATCGCCAGCGAACGTATCAACACTCCGCAGGGCGAC
AAGCAAACCTACCGCGAGTGGCACCAAAAGACCACCGCCAAGTGGACTCG
CCTTTCCGACTCCGAGAAGGAGGTCTACATGCAGGAGTCGCGCAAGGAGA
TGGAGCTCTACAGGAAAGCGATTTCCGTTTGGGAGGAGAAGATGATCCGC
CTGGGCCACATCGACGTGGTGCGTCACGGAAATCTTATCGATCCACCTGA
GCCAAAGCCCCGCAAGACGCTGGCCTCCAAAGATATATAGCGAAGCTTTC
TAGACCAT
BS01042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TFAM-RA | 774 | CG4217-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
TFAM-RB | 855 | CG4217-PB | 148..855 | 83..790 | 3540 | 100 | Plus |
TFAM-RB | 855 | CG4217-PB | 1..70 | 17..86 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TFAM-RA | 1055 | CG4217-RA | 137..911 | 16..790 | 3875 | 100 | Plus |
TFAM-RB | 1242 | CG4217-RB | 285..992 | 83..790 | 3540 | 100 | Plus |
TFAM-RB | 1242 | CG4217-RB | 137..207 | 16..86 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20576145..20576726 | 664..83 | 2910 | 100 | Minus |
3R | 32079331 | 3R | 20575495..20575623 | 790..662 | 645 | 100 | Minus |
3R | 32079331 | 3R | 20576804..20576874 | 86..16 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:36:43 has no hits.
BS01042.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:31 Download gff for
BS01042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:49 Download gff for
BS01042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 146..931 | 16..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:18:31 Download gff for
BS01042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 138..911 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:31 Download gff for
BS01042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 146..931 | 16..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:19 Download gff for
BS01042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 138..911 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:19 Download gff for
BS01042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20576806..20576873 | 17..84 | 100 | | Minus |
3R | 20575492..20575621 | 664..792 | 98 | <- | Minus |
3R | 20576146..20576724 | 85..663 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:18:31 Download gff for
BS01042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16401214..16401343 | 664..792 | 98 | <- | Minus |
arm_3R | 16401868..16402446 | 85..663 | 100 | <- | Minus |
arm_3R | 16402528..16402595 | 17..84 | 100 | | Minus |
BS01042.pep Sequence
Translation from 16 to 789
> BS01042.pep
MIYTTTLMSSRGGLIGSLINKVRPLAAASISNTPAVPSKTLEEQLGLPPR
PKKPLTPYFRFMREQRPKLKAANPQITTVEVVRQLSKNWSDADAQLKERL
QAEFKRDQQIYVEERTKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRV
KELGRPKKPASAFLRFIASERINTPQGDKQTYREWHQKTTAKWTRLSDSE
KEVYMQESRKEMELYRKAISVWEEKMIRLGHIDVVRHGNLIDPPEPKPRK
TLASKDI*
BS01042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TFAM-PA | 257 | CG4217-PA | 1..257 | 1..257 | 1314 | 100 | Plus |
TFAM-PB | 284 | CG4217-PB | 1..284 | 1..257 | 1276 | 90.5 | Plus |