Clone BS01042 Report

Search the DGRC for BS01042

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptTFAM-RA
Protein status:BS01042.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01042.3prime Sequence

806 bp (777 high quality bases) assembled on 2005-11-30

> BS01042.3prime
ATGGTCTAGAAAGCTTCGCTATATATCTTTGGAGGCCAGCGTCTTGCGGG
GCTTTGGCTCAGGTGGATCGATAAGATTTCCGTGACGCACCACGTCGATG
TGGCCCAGGCGGATCATCTTCTCCTCCCAAACGGAAATCGCTTTCCTGTA
GAGCTCCATCTCCTTGCGCGACTCCTGCATGTAGACCTCCTTCTCGGAGT
CGGAAAGGCGAGTCCACTTGGCGGTGGTCTTTTGGTGCCACTCGCGGTAG
GTTTGCTTGTCGCCCTGCGGAGTGTTGATACGTTCGCTGGCGATGAATCG
CAGGAAGGCCGAAGCGGGCTTTTTGGGTCGCCCCAGCTCCTTGACCCGCT
TGCGCAGCTGGCGGCGCTCCTTGGCGTCAACGAGGTCCTGCTTGAGCTGC
TTGATCTCGGCCCGCTGCTCCTCCGTGAGTGTGGCATCGTACTTTGTTCG
CTCCTCCACGTAGATTTGTTGGTCCCGCTTGAACTCGGCCTGCAGGCGCT
CCTTCAGCTGCGCATCGGCATCGGACCAGTTCTTAGACAGCTGGCGCACC
ACCTCGACGGTGGTAATCTGGGGATTGGCAGCCTTCAGCTTGGGCCGCTG
CTCCCGCATGAAGCGAAAGTAGGGAGTCAGCGGTTTCTTTGGTCGCGGCG
GCAGGCCCAACTGCTCCTCCAGGGTCTTCGACGGCACCGCCGGAGTGTTG
CTGATGCTGGCGGCTGCTAGGGGCCTGACTTTGTTGATCAGCGAGCCGAT
GAGGCCGCCGCGCGAGGACATCAGTGTTGTGGTGTAGATCATGTCGACTG
ATAACT

BS01042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4217-PA 774 TFAM-RA 1..774 792..19 3870 100 Minus
CG4217-PB 855 TFAM-RB 148..855 726..19 3540 100 Minus
CG4217-PB 855 TFAM-RB 1..70 792..723 350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
TFAM-RA 1055 CG4217-RA 137..911 793..19 3875 100 Minus
TFAM-RB 1242 CG4217-RB 285..992 726..19 3540 100 Minus
TFAM-RB 1242 CG4217-RB 137..207 793..723 355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20576145..20576726 145..726 2910 100 Plus
3R 32079331 3R 20575495..20575623 19..147 645 100 Plus
3R 32079331 3R 20576804..20576874 723..793 355 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:01:41 has no hits.

BS01042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:05 Download gff for BS01042.3prime
Subject Subject Range Query Range Percent Splice Strand
TFAM-PA 1..774 19..792 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:34 Download gff for BS01042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4217-PA 1..774 19..792 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:13:32 Download gff for BS01042.3prime
Subject Subject Range Query Range Percent Splice Strand
TFAM-RA 137..922 8..793 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:53:24 Download gff for BS01042.3prime
Subject Subject Range Query Range Percent Splice Strand
TFAM-RA 137..922 8..793 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:53:24 Download gff for BS01042.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20575484..20575621 8..145 96 <- Plus
3R 20576146..20576724 146..724 100 <- Plus
3R 20576806..20576874 725..793 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:13:32 Download gff for BS01042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16401206..16401343 8..145 96 <- Plus
arm_3R 16401868..16402446 146..724 100 <- Plus
arm_3R 16402528..16402596 725..793 100   Plus

BS01042.5prime Sequence

806 bp (699 high quality bases) assembled on 2005-11-30

> BS01042.5prime
GAAGTTATCAGTCGACATGATCTACACCACAACACTGATGTCCTCGCGCG
GCGGCCTCATCGGCTCGCTGATCAACAAAGTCAGGCCCCTAGCAGCCGCC
AGCATCAGCAACACTCCGGCGGTGCCGTCGAAGACCCTGGAGGAGCAGTT
GGGCCTGCCGCCGCGACCAAAGAAACCGCTGACTCCCTACTTTCGCTTCA
TGCGGGAGCAGCGGCCCAAGCTGAAGGCTGCCAATCCCCAGATTACCACC
GTCGAGGTGGTGCGCCAGCTGTCTAAGAACTGGTCCGATGCCGATGCGCA
GCTGAAGGAGCGCCTGCAGGCCGAGTTCAAGCGGGACCAACAAATCTACG
TGGAGGAGCGAACAAAGTACGATGCCACACTCACGGAGGAGCAGCGGGCC
GAGATCAAGCAGCTCAAGCAGGACCTCGTTGACGCCAAGGAGCGCCGCCA
GCTGCGCAAGCGGGTCAAGGAGCTGGGGCGACCCAAAAAGCCCGCTTCGG
CCTTCCTGCGATTCATCGCCAGCGAACGTATCAACACTCCGCAGGGCGAC
AAGCAAACCTACCGCGAGTGGCACCAAAAGACCACCGCCAAGTGGACTCG
CCTTTCCGACTCCGAGAAGGAGGTCTACATGCAGGAGTCGCGCAAGGAGA
TGGAGCTCTACAGGAAAGCGATTTCCGTTTGGGAGGAGAAGATGATCCGC
CTGGGCCACATCGACGTGGTGCGTCACGGAAATCTTATCGATCCACCTGA
GCCAAAGCCCCGCAAGACGCTGGCCTCCAAAGATATATAGCGAAGCTTTC
TAGACC

BS01042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4217-PA 774 TFAM-RA 1..774 17..790 3870 100 Plus
CG4217-PB 855 TFAM-RB 148..855 83..790 3540 100 Plus
CG4217-PB 855 TFAM-RB 1..70 17..86 350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
TFAM-RA 1055 CG4217-RA 137..911 16..790 3875 100 Plus
TFAM-RB 1242 CG4217-RB 285..992 83..790 3540 100 Plus
TFAM-RB 1242 CG4217-RB 137..207 16..86 355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20576145..20576726 664..83 2910 100 Minus
3R 32079331 3R 20575495..20575623 790..662 645 100 Minus
3R 32079331 3R 20576804..20576874 86..16 355 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:34:57 has no hits.

BS01042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:06 Download gff for BS01042.5prime
Subject Subject Range Query Range Percent Splice Strand
TFAM-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:35 Download gff for BS01042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4217-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:50:21 Download gff for BS01042.5prime
Subject Subject Range Query Range Percent Splice Strand
TFAM-RA 137..922 16..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:52 Download gff for BS01042.5prime
Subject Subject Range Query Range Percent Splice Strand
TFAM-RA 137..922 16..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:52 Download gff for BS01042.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20575484..20575621 664..801 96 <- Minus
3R 20576146..20576724 85..663 100 <- Minus
3R 20576806..20576874 16..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:50:21 Download gff for BS01042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16401206..16401343 664..801 96 <- Minus
arm_3R 16401868..16402446 85..663 100 <- Minus
arm_3R 16402528..16402596 16..84 100   Minus

BS01042.complete Sequence

808 bp (808 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634506

> BS01042.complete
GAAGTTATCAGTCGACATGATCTACACCACAACACTGATGTCCTCGCGCG
GCGGCCTCATCGGCTCGCTGATCAACAAAGTCAGGCCCCTAGCAGCCGCC
AGCATCAGCAACACTCCGGCGGTGCCGTCGAAGACCCTGGAGGAGCAGTT
GGGCCTGCCGCCGCGACCAAAGAAACCGCTGACTCCCTACTTTCGCTTCA
TGCGGGAGCAGCGGCCCAAGCTGAAGGCTGCCAATCCCCAGATTACCACC
GTCGAGGTGGTGCGCCAGCTGTCTAAGAACTGGTCCGATGCCGATGCGCA
GCTGAAGGAGCGCCTGCAGGCCGAGTTCAAGCGGGACCAACAAATCTACG
TGGAGGAGCGAACAAAGTACGATGCCACACTCACGGAGGAGCAGCGGGCC
GAGATCAAGCAGCTCAAGCAGGACCTCGTTGACGCCAAGGAGCGCCGCCA
GCTGCGCAAGCGGGTCAAGGAGCTGGGGCGACCCAAAAAGCCCGCTTCGG
CCTTCCTGCGATTCATCGCCAGCGAACGTATCAACACTCCGCAGGGCGAC
AAGCAAACCTACCGCGAGTGGCACCAAAAGACCACCGCCAAGTGGACTCG
CCTTTCCGACTCCGAGAAGGAGGTCTACATGCAGGAGTCGCGCAAGGAGA
TGGAGCTCTACAGGAAAGCGATTTCCGTTTGGGAGGAGAAGATGATCCGC
CTGGGCCACATCGACGTGGTGCGTCACGGAAATCTTATCGATCCACCTGA
GCCAAAGCCCCGCAAGACGCTGGCCTCCAAAGATATATAGCGAAGCTTTC
TAGACCAT

BS01042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
TFAM-RA 774 CG4217-PA 1..774 17..790 3870 100 Plus
TFAM-RB 855 CG4217-PB 148..855 83..790 3540 100 Plus
TFAM-RB 855 CG4217-PB 1..70 17..86 350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
TFAM-RA 1055 CG4217-RA 137..911 16..790 3875 100 Plus
TFAM-RB 1242 CG4217-RB 285..992 83..790 3540 100 Plus
TFAM-RB 1242 CG4217-RB 137..207 16..86 355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20576145..20576726 664..83 2910 100 Minus
3R 32079331 3R 20575495..20575623 790..662 645 100 Minus
3R 32079331 3R 20576804..20576874 86..16 355 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:36:43 has no hits.

BS01042.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:31 Download gff for BS01042.complete
Subject Subject Range Query Range Percent Splice Strand
TFAM-RA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:49 Download gff for BS01042.complete
Subject Subject Range Query Range Percent Splice Strand
TFAM-RA 146..931 16..801 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:18:31 Download gff for BS01042.complete
Subject Subject Range Query Range Percent Splice Strand
TFAM-RA 138..911 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:31 Download gff for BS01042.complete
Subject Subject Range Query Range Percent Splice Strand
TFAM-RA 146..931 16..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:19 Download gff for BS01042.complete
Subject Subject Range Query Range Percent Splice Strand
TFAM-RA 138..911 17..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:19 Download gff for BS01042.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20576806..20576873 17..84 100   Minus
3R 20575492..20575621 664..792 98 <- Minus
3R 20576146..20576724 85..663 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:18:31 Download gff for BS01042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16401214..16401343 664..792 98 <- Minus
arm_3R 16401868..16402446 85..663 100 <- Minus
arm_3R 16402528..16402595 17..84 100   Minus

BS01042.pep Sequence

Translation from 16 to 789

> BS01042.pep
MIYTTTLMSSRGGLIGSLINKVRPLAAASISNTPAVPSKTLEEQLGLPPR
PKKPLTPYFRFMREQRPKLKAANPQITTVEVVRQLSKNWSDADAQLKERL
QAEFKRDQQIYVEERTKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRV
KELGRPKKPASAFLRFIASERINTPQGDKQTYREWHQKTTAKWTRLSDSE
KEVYMQESRKEMELYRKAISVWEEKMIRLGHIDVVRHGNLIDPPEPKPRK
TLASKDI*

BS01042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
TFAM-PA 257 CG4217-PA 1..257 1..257 1314 100 Plus
TFAM-PB 284 CG4217-PB 1..284 1..257 1276 90.5 Plus