Clone BS01044 Report

Search the DGRC for BS01044

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptOptix-RB
Protein status:BS01044.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01044.3prime Sequence

812 bp (810 high quality bases) assembled on 2005-11-30

> BS01044.3prime
ATGGTCTAGAAAGCTTCGTCATGTGATCTCGGGAGCACTGTGCTTCAGCT
CCGGCGACGTGGAGAAGGGCCGATGCAGCATCAGTTGGCCACTGTGATGG
TAGCCGGTCGTGGTGGGCTCATGGTGTTGGTTGCCACCTCCTCCTCCGAC
GGATGCTGCCGCCGCCACTGCCGTGGAGTTGAGCTTCTCCGGGGAGTTTA
TCCTCAGCTTCGGCGGCGGATGCGGTGGTCCATGACCACCTGGAACGCAC
TCCACACTGTAGGCAGCCGCGTAGGCCGGGTGATGCAGTGGCGGTCCGCC
GGATGCGCCGTTCAGTGCCAGCGACTGCGGCAGCTGCGGATGCGGACGCA
GGACAATCGGCTGGATGGGAAACTGCTGCGACATCTCCTTCAGGTTGCTG
AAGCTCTGCAGGTAACAGCCGGCGCTGAACAGACTGGTGGCCGCGTCCAG
CTTGAAGGGTGGCAGACAGCCCGGACCGGTCAGAGGTCCTCCGGGTCCTG
CGCCCGCCCCGCCCCCGTAGCCCGGCGGCAGTTGGGGCGGCGTGTGGGTG
GGCGAGGCCAGCGGCAGGGGCAGCGAGAGGGGCAGTGGCAGCGATCCGCT
CAGATCCCGCGGCTTGTCGTCGTCCACGCTCAGGCTCTCCTCGCGGTCGT
TGGCGCCGTTGGAGGTGCTGCCCGGACTATGCTGCAGCTGCAGGCTGCTC
GGCACCGGCGAGTGGGTGCCCAGTGAGATGTCCGAGTCGGAGCTGTCCGA
CGGCGTTGGTGAGGCAGCTCCGTCCGCCCGCCGGCTCCGACAGCCCATGT
CGACTGATAACT

BS01044.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG18455-PA 1464 Optix-RA 685..1464 798..19 3850 99.7 Minus
CG18455-PB 780 Optix-RB 1..780 798..19 3850 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 2668 CG18455-RC 1360..2139 798..19 3870 99.7 Minus
Optix-RB 1470 CG18455-RB 162..941 798..19 3870 99.7 Minus
Optix-RA 2358 CG18455-RA 1050..1829 798..19 3870 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8041221..8042000 798..19 3870 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 05:00:57 has no hits.

BS01044.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:09 Download gff for BS01044.3prime
Subject Subject Range Query Range Percent Splice Strand
Optix-PB 1..780 19..798 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:39 Download gff for BS01044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18455-PB 1..780 19..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:11:44 Download gff for BS01044.3prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1044..1829 19..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:40 Download gff for BS01044.3prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1044..1829 19..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:40 Download gff for BS01044.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8041215..8042000 19..807 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:11:44 Download gff for BS01044.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3928720..3929505 19..807 99   Minus

BS01044.5prime Sequence

812 bp (811 high quality bases) assembled on 2005-11-30

> BS01044.5prime
GAAGTTATCAGTCGACATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTG
CCTCACCAACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACC
CACTCGCCGGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCAC
CTCCAACGGCGCCAACGACCGCGAGGAGAGCCTGAGCGTGGACGACGACA
AGCCGCGGGATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTG
CCGCTGGCCTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGG
GGGCGGGGCGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTC
TGCCACCCTTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGT
TACCTGCAGAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCAT
CCAGCCGATTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCAC
TGAACGGCGCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCT
GCCTACAGTGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCC
GCCGAAGCTGAGGATAAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGG
CGGCGGCAGCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCC
ACCACGACCGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTT
CTCCACGTCGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACATGACGAA
GCTTTCTAGACC

BS01044.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG18455-PA 1464 Optix-RA 685..1464 17..796 3850 99.7 Plus
CG18455-PB 780 Optix-RB 1..780 17..796 3850 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 2668 CG18455-RC 1360..2139 17..796 3870 99.7 Plus
Optix-RB 1470 CG18455-RB 162..941 17..796 3870 99.7 Plus
Optix-RA 2358 CG18455-RA 1050..1829 17..796 3870 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8041221..8042000 17..796 3870 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 20:59:46 has no hits.

BS01044.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:10 Download gff for BS01044.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-PB 1..780 17..796 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:41 Download gff for BS01044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18455-PB 1..780 17..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:53:53 Download gff for BS01044.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1044..1829 8..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:12 Download gff for BS01044.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1044..1829 8..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:12 Download gff for BS01044.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8041215..8042000 8..796 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:53:53 Download gff for BS01044.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3928720..3929505 8..796 99   Plus

BS01044.complete Sequence

814 bp (814 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634507

> BS01044.complete
GAAGTTATCAGTCGACATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTG
CCTCACCAACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACC
CACTCGCCGGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCAC
CTCCAACGGCGCCAACGACCGCGAGGAGAGCCTGAGCGTGGACGACGACA
AGCCGCGGGATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTG
CCGCTGGCCTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGG
GGGCGGGGCGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTC
TGCCACCCTTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGT
TACCTGCAGAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCAT
CCAGCCGATTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCAC
TGAACGGCGCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCT
GCCTACAGTGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCC
GCCGAAGCTGAGGATAAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGG
CGGCGGCAGCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCC
ACCACGACCGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTT
CTCCACGTCGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACATGACGAA
GCTTTCTAGACCAT

BS01044.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 1479 CG18455-PC 685..1464 17..796 3870 99.7 Plus
Optix-RB 780 CG18455-PB 1..780 17..796 3870 99.7 Plus
Optix-RA 1464 CG18455-PA 685..1464 17..796 3870 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 2668 CG18455-RC 1360..2139 17..796 3870 99.7 Plus
Optix-RB 1470 CG18455-RB 162..941 17..796 3870 99.7 Plus
Optix-RA 2358 CG18455-RA 1050..1829 17..796 3870 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8041221..8042000 17..796 3870 99.7 Plus
Blast to na_te.dros performed on 2014-11-27 10:48:56 has no hits.

BS01044.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:32 Download gff for BS01044.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RB 1..780 17..796 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:50 Download gff for BS01044.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RB 73..858 8..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:52 Download gff for BS01044.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1050..1829 17..798 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:33 Download gff for BS01044.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RB 73..858 8..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:33 Download gff for BS01044.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1050..1829 17..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:33 Download gff for BS01044.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8041221..8042000 17..798 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:52 Download gff for BS01044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3928726..3929505 17..798 99   Plus

BS01044.pep Sequence

Translation from 16 to 795

> BS01044.pep
MGCRSRRADGAASPTPSDSSDSDISLGTHSPVPSSLQLQHSPGSTSNGAN
DREESLSVDDDKPRDLSGSLPLPLSLPLPLASPTHTPPQLPPGYGGGAGA
GPGGPLTGPGCLPPFKLDAATSLFSAGCYLQSFSNLKEMSQQFPIQPIVL
RPHPQLPQSLALNGASGGPPLHHPAYAAAYSVECVPGGHGPPHPPPKLRI
NSPEKLNSTAVAAAASVGGGGGNQHHEPTTTGYHHSGQLMLHRPFSTSPE
LKHSAPEIT*

BS01044.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-PB 259 CG18455-PB 1..259 1..259 1397 100 Plus
Optix-PA 487 CG18455-PA 229..487 1..259 1397 100 Plus
Optix-PC 492 CG18455-PC 229..487 1..259 1397 100 Plus