Clone Sequence Records
BS01044.3prime Sequence
812 bp (810 high quality bases) assembled on 2005-11-30
> BS01044.3prime
ATGGTCTAGAAAGCTTCGTCATGTGATCTCGGGAGCACTGTGCTTCAGCT
CCGGCGACGTGGAGAAGGGCCGATGCAGCATCAGTTGGCCACTGTGATGG
TAGCCGGTCGTGGTGGGCTCATGGTGTTGGTTGCCACCTCCTCCTCCGAC
GGATGCTGCCGCCGCCACTGCCGTGGAGTTGAGCTTCTCCGGGGAGTTTA
TCCTCAGCTTCGGCGGCGGATGCGGTGGTCCATGACCACCTGGAACGCAC
TCCACACTGTAGGCAGCCGCGTAGGCCGGGTGATGCAGTGGCGGTCCGCC
GGATGCGCCGTTCAGTGCCAGCGACTGCGGCAGCTGCGGATGCGGACGCA
GGACAATCGGCTGGATGGGAAACTGCTGCGACATCTCCTTCAGGTTGCTG
AAGCTCTGCAGGTAACAGCCGGCGCTGAACAGACTGGTGGCCGCGTCCAG
CTTGAAGGGTGGCAGACAGCCCGGACCGGTCAGAGGTCCTCCGGGTCCTG
CGCCCGCCCCGCCCCCGTAGCCCGGCGGCAGTTGGGGCGGCGTGTGGGTG
GGCGAGGCCAGCGGCAGGGGCAGCGAGAGGGGCAGTGGCAGCGATCCGCT
CAGATCCCGCGGCTTGTCGTCGTCCACGCTCAGGCTCTCCTCGCGGTCGT
TGGCGCCGTTGGAGGTGCTGCCCGGACTATGCTGCAGCTGCAGGCTGCTC
GGCACCGGCGAGTGGGTGCCCAGTGAGATGTCCGAGTCGGAGCTGTCCGA
CGGCGTTGGTGAGGCAGCTCCGTCCGCCCGCCGGCTCCGACAGCCCATGT
CGACTGATAACT
BS01044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18455-PA | 1464 | Optix-RA | 685..1464 | 798..19 | 3850 | 99.7 | Minus |
CG18455-PB | 780 | Optix-RB | 1..780 | 798..19 | 3850 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 2668 | CG18455-RC | 1360..2139 | 798..19 | 3870 | 99.7 | Minus |
Optix-RB | 1470 | CG18455-RB | 162..941 | 798..19 | 3870 | 99.7 | Minus |
Optix-RA | 2358 | CG18455-RA | 1050..1829 | 798..19 | 3870 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8041221..8042000 | 798..19 | 3870 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:00:57 has no hits.
BS01044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:09 Download gff for
BS01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-PB | 1..780 | 19..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:39 Download gff for
BS01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18455-PB | 1..780 | 19..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:11:44 Download gff for
BS01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1044..1829 | 19..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:40 Download gff for
BS01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1044..1829 | 19..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:40 Download gff for
BS01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8041215..8042000 | 19..807 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:11:44 Download gff for
BS01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3928720..3929505 | 19..807 | 99 | | Minus |
BS01044.5prime Sequence
812 bp (811 high quality bases) assembled on 2005-11-30
> BS01044.5prime
GAAGTTATCAGTCGACATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTG
CCTCACCAACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACC
CACTCGCCGGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCAC
CTCCAACGGCGCCAACGACCGCGAGGAGAGCCTGAGCGTGGACGACGACA
AGCCGCGGGATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTG
CCGCTGGCCTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGG
GGGCGGGGCGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTC
TGCCACCCTTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGT
TACCTGCAGAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCAT
CCAGCCGATTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCAC
TGAACGGCGCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCT
GCCTACAGTGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCC
GCCGAAGCTGAGGATAAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGG
CGGCGGCAGCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCC
ACCACGACCGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTT
CTCCACGTCGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACATGACGAA
GCTTTCTAGACC
BS01044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18455-PA | 1464 | Optix-RA | 685..1464 | 17..796 | 3850 | 99.7 | Plus |
CG18455-PB | 780 | Optix-RB | 1..780 | 17..796 | 3850 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 2668 | CG18455-RC | 1360..2139 | 17..796 | 3870 | 99.7 | Plus |
Optix-RB | 1470 | CG18455-RB | 162..941 | 17..796 | 3870 | 99.7 | Plus |
Optix-RA | 2358 | CG18455-RA | 1050..1829 | 17..796 | 3870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8041221..8042000 | 17..796 | 3870 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:59:46 has no hits.
BS01044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:10 Download gff for
BS01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-PB | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:41 Download gff for
BS01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18455-PB | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:53:53 Download gff for
BS01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1044..1829 | 8..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:12 Download gff for
BS01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1044..1829 | 8..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:12 Download gff for
BS01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8041215..8042000 | 8..796 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:53:53 Download gff for
BS01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3928720..3929505 | 8..796 | 99 | | Plus |
BS01044.complete Sequence
814 bp (814 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634507
> BS01044.complete
GAAGTTATCAGTCGACATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTG
CCTCACCAACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACC
CACTCGCCGGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCAC
CTCCAACGGCGCCAACGACCGCGAGGAGAGCCTGAGCGTGGACGACGACA
AGCCGCGGGATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTG
CCGCTGGCCTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGG
GGGCGGGGCGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTC
TGCCACCCTTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGT
TACCTGCAGAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCAT
CCAGCCGATTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCAC
TGAACGGCGCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCT
GCCTACAGTGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCC
GCCGAAGCTGAGGATAAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGG
CGGCGGCAGCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCC
ACCACGACCGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTT
CTCCACGTCGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACATGACGAA
GCTTTCTAGACCAT
BS01044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 1479 | CG18455-PC | 685..1464 | 17..796 | 3870 | 99.7 | Plus |
Optix-RB | 780 | CG18455-PB | 1..780 | 17..796 | 3870 | 99.7 | Plus |
Optix-RA | 1464 | CG18455-PA | 685..1464 | 17..796 | 3870 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 2668 | CG18455-RC | 1360..2139 | 17..796 | 3870 | 99.7 | Plus |
Optix-RB | 1470 | CG18455-RB | 162..941 | 17..796 | 3870 | 99.7 | Plus |
Optix-RA | 2358 | CG18455-RA | 1050..1829 | 17..796 | 3870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8041221..8042000 | 17..796 | 3870 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:48:56 has no hits.
BS01044.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:32 Download gff for
BS01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RB | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:50 Download gff for
BS01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RB | 73..858 | 8..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:52 Download gff for
BS01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1050..1829 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:33 Download gff for
BS01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RB | 73..858 | 8..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:33 Download gff for
BS01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1050..1829 | 17..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:33 Download gff for
BS01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8041221..8042000 | 17..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:52 Download gff for
BS01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3928726..3929505 | 17..798 | 99 | | Plus |
BS01044.pep Sequence
Translation from 16 to 795
> BS01044.pep
MGCRSRRADGAASPTPSDSSDSDISLGTHSPVPSSLQLQHSPGSTSNGAN
DREESLSVDDDKPRDLSGSLPLPLSLPLPLASPTHTPPQLPPGYGGGAGA
GPGGPLTGPGCLPPFKLDAATSLFSAGCYLQSFSNLKEMSQQFPIQPIVL
RPHPQLPQSLALNGASGGPPLHHPAYAAAYSVECVPGGHGPPHPPPKLRI
NSPEKLNSTAVAAAASVGGGGGNQHHEPTTTGYHHSGQLMLHRPFSTSPE
LKHSAPEIT*
BS01044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-PB | 259 | CG18455-PB | 1..259 | 1..259 | 1397 | 100 | Plus |
Optix-PA | 487 | CG18455-PA | 229..487 | 1..259 | 1397 | 100 | Plus |
Optix-PC | 492 | CG18455-PC | 229..487 | 1..259 | 1397 | 100 | Plus |