Clone BS01046 Report

Search the DGRC for BS01046

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:46
Vector:pDNR-Dual
Associated Gene/Transcriptsvp-RC
Protein status:BS01046.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01046.3prime Sequence

878 bp (877 high quality bases) assembled on 2005-11-30

> BS01046.3prime
ATGGTCTAGAAAGCTTCGTCACATCGAAGGCAGATAGGGCCAGGAGAAAC
TGTTGCCGCTCAGCAGCATATCGCGTATCAGCGTTTCAATTGGCGTTTTT
CCGACTAGACGCACAAAAAACAATTGCTCAATGACTTGTGAGGAGACCGT
TCGCAGCGATGGCAGTCTGAGAAGCAGCTTGCCGAATCTCGTGGGCTGGT
TGGGATACTGGGTCCGGCAGTATTCCTCGAGGGCGCACTGCGACTTCTCT
TGCAGGGATTCAATGTGCGTCACATCGGACAGGCCGCAGGCATCGGTGGT
GAAGAGCACGATCGCCTTGAGGCAGGAGTACTCCGCGGAGTCGACATGCA
GCGCCTTCAGCTTCTCCACCTGCTCCTGGAAGATGCGGATGTGGTCCATG
AAGGCCACCACACGATCGGCGGCCATCGGGGAGGCATGAAGTCCGGCGGC
GGCCAGCAGTGGCGCCACATGGAGCGGCATGGAGCACTGGCTGGCGTTTA
GGACGAAGAGCTCTGACCAGACGAGCCGGAGCAGGGCCACCTGGTCGGTC
ACCTGCAGCTCCGGGAAGAAGGGTATGTTCTTGGCCCACTCGACCGCCGA
GAAGAGCAGTCGGGCGGCCAGTTCGCAGATGTTGTCGATGCCCATAATGT
TGTTGGGTTGCATGCACTGGCCATATCGCGAAGTCGGATACGGTTCCGCC
CGCAGCAGGAGCGAGATGTAGGAACTGAGGTACGAGTGCCCGTTAAAGCC
GGCAATGCCCATGGGATCCCCGTTGGCAATCTGGTACTGCCCATGCATGC
CGGCCAGACCGGGCTGAGTGGGTGGTACGCGTCCACGTTGAACAGCTTCG
CGTCTCATGCCCATGTCGACTGATAACT

BS01046.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11502-PC 846 svp-RC 1..846 864..19 4230 100 Minus
CG11502-PB 1632 svp-RB 787..1632 864..19 4230 100 Minus
CG11502-PA 2241 svp-RA 787..1357 864..294 2855 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 3859 CG11502-RE 1230..2076 864..18 4235 100 Minus
svp-RB 3859 CG11502-RB 1230..2076 864..18 4235 100 Minus
svp-RC 2876 CG11502-RC 247..1093 864..18 4235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12294006..12294559 847..294 2770 100 Minus
3R 32079331 3R 12300478..12300638 294..134 805 100 Minus
3R 32079331 3R 12300885..12301002 135..18 590 100 Minus
Blast to na_te.dros performed on 2015-01-30 16:35:34 has no hits.

BS01046.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:14 Download gff for BS01046.3prime
Subject Subject Range Query Range Percent Splice Strand
svp-PC 1..846 19..864 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:44 Download gff for BS01046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11502-PB 782..1632 19..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:27:10 Download gff for BS01046.3prime
Subject Subject Range Query Range Percent Splice Strand
svp-RC 242..1093 18..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:02 Download gff for BS01046.3prime
Subject Subject Range Query Range Percent Splice Strand
svp-RC 242..1093 18..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:02 Download gff for BS01046.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12290335..12290358 846..869 91 -> Minus
3R 12294008..12294559 294..845 100 -> Minus
3R 12300479..12300636 136..293 100 -> Minus
3R 12300885..12301002 18..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:27:10 Download gff for BS01046.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8116057..8116080 846..869 91 -> Minus
arm_3R 8119730..8120281 294..845 100 -> Minus
arm_3R 8126201..8126358 136..293 100 -> Minus
arm_3R 8126607..8126724 18..135 100   Minus

BS01046.5prime Sequence

823 bp (777 high quality bases) assembled on 2005-11-30

> BS01046.5prime
GAAGTTATCAGTCGACATGGGCATGAGACGCGAAGCTGTTCAACGTGGAC
GCGTACCACCCACTCAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAG
ATTGCCAACGGGGATCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTA
CCTCAGTTCCTACATCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTT
CGCGATATGGCCAGTGCATGCAACCCAACAACATTATGGGCATCGACAAC
ATCTGCGAACTGGCCGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAA
GAACATACCCTTCTTCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGC
TCCGGCTCGTCTGGTCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCC
ATGCCGCTCCATGTGGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTC
CCCGATGGCCGCCGATCGTGTGGTGGCCTTCATGGACCACATCCGCATCT
TCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAG
TACTCCTGCCTCAAGGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCT
GTCCGATGTGACGCACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCC
TCGAGGAATACTGCCGGACCCAGTATCCCAACCAGCCCACGAGATTCGGC
AAGCTGCTTCTCAGACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCAT
TGAGCAATTGTTTTTTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGC
TGATACGCGATATGCTGCTGAGC

BS01046.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11502-PC 846 svp-RC 1..807 17..823 4035 100 Plus
CG11502-PB 1632 svp-RB 787..1593 17..823 4035 100 Plus
CG11502-PA 2241 svp-RA 787..1357 17..587 2855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 3859 CG11502-RE 1230..2036 17..823 4035 100 Plus
svp-RB 3859 CG11502-RB 1230..2036 17..823 4035 100 Plus
svp-RC 2876 CG11502-RC 247..1053 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12294006..12294559 34..587 2770 100 Plus
3R 32079331 3R 12300478..12300638 587..747 805 100 Plus
3R 32079331 3R 12300885..12300962 746..823 390 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:14:39 has no hits.

BS01046.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:15 Download gff for BS01046.5prime
Subject Subject Range Query Range Percent Splice Strand
svp-PC 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:45 Download gff for BS01046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11502-PB 782..1593 12..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:09:03 Download gff for BS01046.5prime
Subject Subject Range Query Range Percent Splice Strand
svp-RC 242..1053 12..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:23 Download gff for BS01046.5prime
Subject Subject Range Query Range Percent Splice Strand
svp-RC 242..1053 12..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:23 Download gff for BS01046.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12290335..12290358 12..35 91 -> Plus
3R 12294008..12294559 36..587 100 -> Plus
3R 12300479..12300636 588..745 100 -> Plus
3R 12300885..12300962 746..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:09:03 Download gff for BS01046.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8116057..8116080 12..35 91 -> Plus
arm_3R 8119730..8120281 36..587 100 -> Plus
arm_3R 8126201..8126358 588..745 100 -> Plus
arm_3R 8126607..8126684 746..823 100   Plus

BS01046.complete Sequence

880 bp (880 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634508

> BS01046.complete
GAAGTTATCAGTCGACATGGGCATGAGACGCGAAGCTGTTCAACGTGGAC
GCGTACCACCCACTCAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAG
ATTGCCAACGGGGATCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTA
CCTCAGTTCCTACATCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTT
CGCGATATGGCCAGTGCATGCAACCCAACAACATTATGGGCATCGACAAC
ATCTGCGAACTGGCCGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAA
GAACATACCCTTCTTCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGC
TCCGGCTCGTCTGGTCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCC
ATGCCGCTCCATGTGGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTC
CCCGATGGCCGCCGATCGTGTGGTGGCCTTCATGGACCACATCCGCATCT
TCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAG
TACTCCTGCCTCAAGGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCT
GTCCGATGTGACGCACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCC
TCGAGGAATACTGCCGGACCCAGTATCCCAACCAGCCCACGAGATTCGGC
AAGCTGCTTCTCAGACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCAT
TGAGCAATTGTTTTTTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGC
TGATACGCGATATGCTGCTGAGCGGCAACAGTTTCTCCTGGCCCTATCTG
CCTTCGATGTGACGAAGCTTTCTAGACCAT

BS01046.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 1665 CG11502-PE 787..1633 17..863 4235 100 Plus
svp-RB 1632 CG11502-PB 787..1632 17..862 4230 100 Plus
svp-RC 846 CG11502-PC 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 3859 CG11502-RE 1230..2076 17..863 4235 100 Plus
svp-RB 3859 CG11502-RB 1230..2076 17..863 4235 100 Plus
svp-RC 2876 CG11502-RC 247..1093 17..863 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12294006..12294559 34..587 2770 100 Plus
3R 32079331 3R 12300478..12300638 587..747 805 100 Plus
3R 32079331 3R 12300885..12301002 746..863 590 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:54:27 has no hits.

BS01046.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:34 Download gff for BS01046.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 782..1632 12..862 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:38 Download gff for BS01046.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 1230..2076 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:41 Download gff for BS01046.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RC 247..1093 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:34 Download gff for BS01046.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 1225..2076 12..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:37 Download gff for BS01046.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RC 247..1093 17..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:37 Download gff for BS01046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12290340..12290358 17..35 100 -> Plus
3R 12294008..12294559 36..587 100 -> Plus
3R 12300479..12300636 588..745 100 -> Plus
3R 12300885..12301002 746..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:41 Download gff for BS01046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8126201..8126358 588..745 100 -> Plus
arm_3R 8116062..8116080 17..35 100 -> Plus
arm_3R 8126607..8126724 746..864 99   Plus
arm_3R 8119730..8120281 36..587 100 -> Plus

BS01046.pep Sequence

Translation from 16 to 861

> BS01046.pep
MGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIAGFNGHSYLSSYI
SLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWAKNIPFF
PELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD
RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTH
IESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF
VRLVGKTPIETLIRDMLLSGNSFSWPYLPSM*

BS01046.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
svp-PC 281 CG11502-PC 1..281 1..281 1458 100 Plus
svp-PB 543 CG11502-PB 263..543 1..281 1458 100 Plus
svp-PE 554 CG11502-PE 263..543 1..281 1458 100 Plus
svp-PA 746 CG11502-PA 263..452 1..190 986 100 Plus
dsf-PB 691 CG9019-PB 449..681 41..266 381 37.2 Plus