Clone Sequence Records
BS01046.3prime Sequence
878 bp (877 high quality bases) assembled on 2005-11-30
> BS01046.3prime
ATGGTCTAGAAAGCTTCGTCACATCGAAGGCAGATAGGGCCAGGAGAAAC
TGTTGCCGCTCAGCAGCATATCGCGTATCAGCGTTTCAATTGGCGTTTTT
CCGACTAGACGCACAAAAAACAATTGCTCAATGACTTGTGAGGAGACCGT
TCGCAGCGATGGCAGTCTGAGAAGCAGCTTGCCGAATCTCGTGGGCTGGT
TGGGATACTGGGTCCGGCAGTATTCCTCGAGGGCGCACTGCGACTTCTCT
TGCAGGGATTCAATGTGCGTCACATCGGACAGGCCGCAGGCATCGGTGGT
GAAGAGCACGATCGCCTTGAGGCAGGAGTACTCCGCGGAGTCGACATGCA
GCGCCTTCAGCTTCTCCACCTGCTCCTGGAAGATGCGGATGTGGTCCATG
AAGGCCACCACACGATCGGCGGCCATCGGGGAGGCATGAAGTCCGGCGGC
GGCCAGCAGTGGCGCCACATGGAGCGGCATGGAGCACTGGCTGGCGTTTA
GGACGAAGAGCTCTGACCAGACGAGCCGGAGCAGGGCCACCTGGTCGGTC
ACCTGCAGCTCCGGGAAGAAGGGTATGTTCTTGGCCCACTCGACCGCCGA
GAAGAGCAGTCGGGCGGCCAGTTCGCAGATGTTGTCGATGCCCATAATGT
TGTTGGGTTGCATGCACTGGCCATATCGCGAAGTCGGATACGGTTCCGCC
CGCAGCAGGAGCGAGATGTAGGAACTGAGGTACGAGTGCCCGTTAAAGCC
GGCAATGCCCATGGGATCCCCGTTGGCAATCTGGTACTGCCCATGCATGC
CGGCCAGACCGGGCTGAGTGGGTGGTACGCGTCCACGTTGAACAGCTTCG
CGTCTCATGCCCATGTCGACTGATAACT
BS01046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11502-PC | 846 | svp-RC | 1..846 | 864..19 | 4230 | 100 | Minus |
CG11502-PB | 1632 | svp-RB | 787..1632 | 864..19 | 4230 | 100 | Minus |
CG11502-PA | 2241 | svp-RA | 787..1357 | 864..294 | 2855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 1230..2076 | 864..18 | 4235 | 100 | Minus |
svp-RB | 3859 | CG11502-RB | 1230..2076 | 864..18 | 4235 | 100 | Minus |
svp-RC | 2876 | CG11502-RC | 247..1093 | 864..18 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12294006..12294559 | 847..294 | 2770 | 100 | Minus |
3R | 32079331 | 3R | 12300478..12300638 | 294..134 | 805 | 100 | Minus |
3R | 32079331 | 3R | 12300885..12301002 | 135..18 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:35:34 has no hits.
BS01046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:14 Download gff for
BS01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-PC | 1..846 | 19..864 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:44 Download gff for
BS01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11502-PB | 782..1632 | 19..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:27:10 Download gff for
BS01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 242..1093 | 18..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:02 Download gff for
BS01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 242..1093 | 18..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:02 Download gff for
BS01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12290335..12290358 | 846..869 | 91 | -> | Minus |
3R | 12294008..12294559 | 294..845 | 100 | -> | Minus |
3R | 12300479..12300636 | 136..293 | 100 | -> | Minus |
3R | 12300885..12301002 | 18..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:27:10 Download gff for
BS01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8116057..8116080 | 846..869 | 91 | -> | Minus |
arm_3R | 8119730..8120281 | 294..845 | 100 | -> | Minus |
arm_3R | 8126201..8126358 | 136..293 | 100 | -> | Minus |
arm_3R | 8126607..8126724 | 18..135 | 100 | | Minus |
BS01046.5prime Sequence
823 bp (777 high quality bases) assembled on 2005-11-30
> BS01046.5prime
GAAGTTATCAGTCGACATGGGCATGAGACGCGAAGCTGTTCAACGTGGAC
GCGTACCACCCACTCAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAG
ATTGCCAACGGGGATCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTA
CCTCAGTTCCTACATCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTT
CGCGATATGGCCAGTGCATGCAACCCAACAACATTATGGGCATCGACAAC
ATCTGCGAACTGGCCGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAA
GAACATACCCTTCTTCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGC
TCCGGCTCGTCTGGTCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCC
ATGCCGCTCCATGTGGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTC
CCCGATGGCCGCCGATCGTGTGGTGGCCTTCATGGACCACATCCGCATCT
TCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAG
TACTCCTGCCTCAAGGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCT
GTCCGATGTGACGCACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCC
TCGAGGAATACTGCCGGACCCAGTATCCCAACCAGCCCACGAGATTCGGC
AAGCTGCTTCTCAGACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCAT
TGAGCAATTGTTTTTTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGC
TGATACGCGATATGCTGCTGAGC
BS01046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11502-PC | 846 | svp-RC | 1..807 | 17..823 | 4035 | 100 | Plus |
CG11502-PB | 1632 | svp-RB | 787..1593 | 17..823 | 4035 | 100 | Plus |
CG11502-PA | 2241 | svp-RA | 787..1357 | 17..587 | 2855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 1230..2036 | 17..823 | 4035 | 100 | Plus |
svp-RB | 3859 | CG11502-RB | 1230..2036 | 17..823 | 4035 | 100 | Plus |
svp-RC | 2876 | CG11502-RC | 247..1053 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12294006..12294559 | 34..587 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 12300478..12300638 | 587..747 | 805 | 100 | Plus |
3R | 32079331 | 3R | 12300885..12300962 | 746..823 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:14:39 has no hits.
BS01046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:15 Download gff for
BS01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-PC | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:45 Download gff for
BS01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11502-PB | 782..1593 | 12..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:09:03 Download gff for
BS01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 242..1053 | 12..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:23 Download gff for
BS01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 242..1053 | 12..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:23 Download gff for
BS01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12290335..12290358 | 12..35 | 91 | -> | Plus |
3R | 12294008..12294559 | 36..587 | 100 | -> | Plus |
3R | 12300479..12300636 | 588..745 | 100 | -> | Plus |
3R | 12300885..12300962 | 746..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:09:03 Download gff for
BS01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8116057..8116080 | 12..35 | 91 | -> | Plus |
arm_3R | 8119730..8120281 | 36..587 | 100 | -> | Plus |
arm_3R | 8126201..8126358 | 588..745 | 100 | -> | Plus |
arm_3R | 8126607..8126684 | 746..823 | 100 | | Plus |
BS01046.complete Sequence
880 bp (880 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634508
> BS01046.complete
GAAGTTATCAGTCGACATGGGCATGAGACGCGAAGCTGTTCAACGTGGAC
GCGTACCACCCACTCAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAG
ATTGCCAACGGGGATCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTA
CCTCAGTTCCTACATCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTT
CGCGATATGGCCAGTGCATGCAACCCAACAACATTATGGGCATCGACAAC
ATCTGCGAACTGGCCGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAA
GAACATACCCTTCTTCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGC
TCCGGCTCGTCTGGTCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCC
ATGCCGCTCCATGTGGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTC
CCCGATGGCCGCCGATCGTGTGGTGGCCTTCATGGACCACATCCGCATCT
TCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAG
TACTCCTGCCTCAAGGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCT
GTCCGATGTGACGCACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCC
TCGAGGAATACTGCCGGACCCAGTATCCCAACCAGCCCACGAGATTCGGC
AAGCTGCTTCTCAGACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCAT
TGAGCAATTGTTTTTTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGC
TGATACGCGATATGCTGCTGAGCGGCAACAGTTTCTCCTGGCCCTATCTG
CCTTCGATGTGACGAAGCTTTCTAGACCAT
BS01046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 1665 | CG11502-PE | 787..1633 | 17..863 | 4235 | 100 | Plus |
svp-RB | 1632 | CG11502-PB | 787..1632 | 17..862 | 4230 | 100 | Plus |
svp-RC | 846 | CG11502-PC | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 1230..2076 | 17..863 | 4235 | 100 | Plus |
svp-RB | 3859 | CG11502-RB | 1230..2076 | 17..863 | 4235 | 100 | Plus |
svp-RC | 2876 | CG11502-RC | 247..1093 | 17..863 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12294006..12294559 | 34..587 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 12300478..12300638 | 587..747 | 805 | 100 | Plus |
3R | 32079331 | 3R | 12300885..12301002 | 746..863 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:54:27 has no hits.
BS01046.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:34 Download gff for
BS01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 782..1632 | 12..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:38 Download gff for
BS01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 1230..2076 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:41 Download gff for
BS01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 247..1093 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:34 Download gff for
BS01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 1225..2076 | 12..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:37 Download gff for
BS01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 247..1093 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:37 Download gff for
BS01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12290340..12290358 | 17..35 | 100 | -> | Plus |
3R | 12294008..12294559 | 36..587 | 100 | -> | Plus |
3R | 12300479..12300636 | 588..745 | 100 | -> | Plus |
3R | 12300885..12301002 | 746..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:41 Download gff for
BS01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8126201..8126358 | 588..745 | 100 | -> | Plus |
arm_3R | 8116062..8116080 | 17..35 | 100 | -> | Plus |
arm_3R | 8126607..8126724 | 746..864 | 99 | | Plus |
arm_3R | 8119730..8120281 | 36..587 | 100 | -> | Plus |
BS01046.pep Sequence
Translation from 16 to 861
> BS01046.pep
MGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIAGFNGHSYLSSYI
SLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWAKNIPFF
PELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD
RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTH
IESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF
VRLVGKTPIETLIRDMLLSGNSFSWPYLPSM*
BS01046.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-PC | 281 | CG11502-PC | 1..281 | 1..281 | 1458 | 100 | Plus |
svp-PB | 543 | CG11502-PB | 263..543 | 1..281 | 1458 | 100 | Plus |
svp-PE | 554 | CG11502-PE | 263..543 | 1..281 | 1458 | 100 | Plus |
svp-PA | 746 | CG11502-PA | 263..452 | 1..190 | 986 | 100 | Plus |
dsf-PB | 691 | CG9019-PB | 449..681 | 41..266 | 381 | 37.2 | Plus |