Clone Sequence Records
BS01048.3prime Sequence
878 bp (872 high quality bases) assembled on 2005-11-30
> BS01048.3prime
ATGGTCTAGAAAGCTTCGTTAATAGTAGGCCTCTTCGGTGGCCTCCGTTT
GTGGAGCTGGCTCCTCGGTGGCCGGCTCTGGAGGAGCGGAAGCTGCTGGC
GACGGAACCTTCTGCGGAACAGGCGGCGACGGAGACTTCTGCAGCGCAGG
CTCCGGCTCACTCATCGGATCCGTGGCGGGACCTGTTGCCTCTGCGTCCG
TGTCTTTGGAGGGTCCGGGTTCACCGCGACCCGTGTTCAAAGGCGACGGA
GGACGCGCAGTGGCCTGCACCTTGAACTGCTTCTCCGGCTTCTTCAGATC
CTTCGGCTTGCCCATCAGACGGTAGTCATTGGGCAATTCAGCCTCTGTGT
ATAGCTTATCGGCGAAGTAGATGCGCCGGATGCGTACGTTGGCATGCAGC
TGCAAGGATACCGTCTCCAGATAGTTGGAGCCGTAAGCACGGCGCGTGAA
GTCGGCCAGGTTAAACTGGATCTGGTTCCAGCCCGGTGACATGCCCATCG
GCATCGCCGTGCAGAAGGGCTTCACGGAGGTCTTGCTCTGGAAATTGGAC
ACTCGGAAACGGCGCATGAAGCGCTGATCGTCTTGAATCTTAACTTCGAA
GCAAAAGTACTTGTGCATGTTCTTTATAAGGAGCACCAGGAAGGGCAACT
TGATGCCCAGCTGCTCCTTGCATTCGCTGGGGCAGTGTATGAATGTGGTG
GACACATTTGAGCCCATTATCTCGAGCACCAGGGACTTGATGTCCTCATC
GTAGATCCGTTTGATATACCCGTTTTTGGTATAGGAAGACCAGTTGTTCA
NGGGCGAACTGCCTACGCTGTAAAGCACGGTAAGGAAACCTTTTTGATAG
GCTGCACGATACATGTCGACTGATAACT
BS01048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-PA | 846 | CG17118-RA | 1..846 | 864..19 | 4136 | 99.5 | Minus |
CG5343-PA | 600 | CG5343-RA | 385..422 | 480..443 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-RA | 979 | CG17118-RA | 45..890 | 864..19 | 4174 | 99.5 | Minus |
Bug22-RA | 943 | CG5343-RA | 585..656 | 484..413 | 225 | 87.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10730696..10731267 | 590..19 | 2815 | 99.5 | Minus |
2L | 23513712 | 2L | 10730440..10730631 | 780..589 | 960 | 100 | Minus |
2L | 23513712 | 2L | 10730299..10730382 | 864..781 | 409 | 98.8 | Minus |
2L | 23513712 | 2L | 10430207..10430278 | 413..484 | 225 | 87.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:56:18 has no hits.
BS01048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:18 Download gff for
BS01048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-PA | 1..846 | 19..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:49 Download gff for
BS01048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-PA | 1..846 | 19..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:15:29 Download gff for
BS01048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..890 | 19..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:58 Download gff for
BS01048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..890 | 19..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:58 Download gff for
BS01048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10730286..10730382 | 781..875 | 94 | -> | Minus |
2L | 10730440..10730631 | 589..780 | 100 | -> | Minus |
2L | 10730698..10731267 | 19..588 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:29 Download gff for
BS01048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10730286..10730382 | 781..875 | 94 | -> | Minus |
arm_2L | 10730440..10730631 | 589..780 | 100 | -> | Minus |
arm_2L | 10730698..10731267 | 19..588 | 99 | | Minus |
BS01048.5prime Sequence
879 bp (766 high quality bases) assembled on 2005-11-30
> BS01048.5prime
GAAGTTATCAGTCGACATGTATCGTGCAGCCTATCAAAAAGGTTTCCTTA
CCGTGCTTTACAGCGTAGGCAGTTCGCCCCTGAACAACTGGTCTTCCTAT
ACCAAAAACGGGTATATCAAACGGATCTACGATGAGGACATCAAGTCCCT
GGTGCTCGAGATAATGGGCTCAAATGTGTCCACCACATTCATACACTGCC
CCAGCGAATGCAAGGAGCAGCTGGGCATCAAGTTGCCCTTCCTGGTGCTC
CTTATAAAGAACATGCACAAGTACTTTTGCTTCGAAGTTAAGATTCAAGA
CGATCAGCGCTTCATGCGCCGTTTCCGAGTGTCCAATTTCCAGAGCAAGA
CCTCCGTGAAGCCCTTCTGCACGGCGATGCCGATGGGCATGTCACCGGGC
TGGAACCAGATCCAGTTTAACCTGGCCGACTTCACGCGCCGTGCTTACGG
CTCCAACTATCTGGAGACGGTATCCTTGCAGCTGCATGCCAACGTACGCA
TCCGGCGCATCTACTTCGCCGATAAGCTATACACAGAGGCTGAATTGCCC
AATGACTACCGTCTGATGGGCAAGCCGAAGGATCTGAAGAAGCCGGAGAA
GCAGTTCAAGGTGCAGGCCACTGCGCGTCCTCCGTCGCCTTTGAACACGG
GTCGCGGTGAACCCGGACCCTCCAAAGACACGGACGCAGAGGCAACAGGT
CCCGCCACGGATCCGATGAGTGAGCCGGAGCCTGCGCTGCAGAAGTCTCC
GTCGCCGCCTGTTCCGCAGAAGGTTCCGTCGCCAGCAGCTTCCGCTCCTC
CAGAGCCGGCCACCGAGGAGCCAGCTCCACAAACGGAGGCCACCGAAGAG
GCCTACTATTAACGAAGCTTTCTAGAACA
BS01048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-PA | 846 | CG17118-RA | 1..846 | 17..862 | 4155 | 99.6 | Plus |
CG5343-PA | 600 | CG5343-RA | 385..422 | 401..438 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-RA | 979 | CG17118-RA | 45..890 | 17..862 | 4185 | 99.6 | Plus |
Bug22-RA | 943 | CG5343-RA | 585..656 | 397..468 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10730696..10731267 | 291..862 | 2815 | 99.5 | Plus |
2L | 23513712 | 2L | 10730440..10730631 | 101..292 | 960 | 100 | Plus |
2L | 23513712 | 2L | 10730299..10730382 | 17..100 | 420 | 100 | Plus |
2L | 23513712 | 2L | 10430207..10430278 | 468..397 | 225 | 87.5 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:56:16 has no hits.
BS01048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:19 Download gff for
BS01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:51 Download gff for
BS01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:54:50 Download gff for
BS01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..890 | 6..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:37:01 Download gff for
BS01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..890 | 6..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:37:01 Download gff for
BS01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10730286..10730382 | 6..100 | 95 | -> | Plus |
2L | 10730440..10730631 | 101..292 | 100 | -> | Plus |
2L | 10730698..10731267 | 293..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:54:50 Download gff for
BS01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10730286..10730382 | 6..100 | 95 | -> | Plus |
arm_2L | 10730440..10730631 | 101..292 | 100 | -> | Plus |
arm_2L | 10730698..10731267 | 293..862 | 99 | | Plus |
BS01048.complete Sequence
880 bp (880 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634509
> BS01048.complete
GAAGTTATCAGTCGACATGTATCGTGCAGCCTATCAAAAAGGTTTCCTTA
CCGTGCTTTACAGCGTAGGCAGTTCGCCCCTGAACAACTGGTCTTCCTAT
ACCAAAAACGGGTATATCAAACGGATCTACGATGAGGACATCAAGTCCCT
GGTGCTCGAGATAATGGGCTCAAATGTGTCCACCACATTCATACACTGCC
CCAGCGAATGCAAGGAGCAGCTGGGCATCAAGTTGCCCTTCCTGGTGCTC
CTTATAAAGAACATGCACAAGTACTTTTGCTTCGAAGTTAAGATTCAAGA
CGATCAGCGCTTCATGCGCCGTTTCCGAGTGTCCAATTTCCAGAGCAAGA
CCTCCGTGAAGCCCTTCTGCACGGCGATGCCGATGGGCATGTCACCGGGC
TGGAACCAGATCCAGTTTAACCTGGCCGACTTCACGCGCCGTGCTTACGG
CTCCAACTATCTGGAGACGGTATCCTTGCAGCTGCATGCCAACGTACGCA
TCCGGCGCATCTACTTCGCCGATAAGCTATACACAGAGGCTGAATTGCCC
AATGACTACCGTCTGATGGGCAAGCCGAAGGATCTGAAGAAGCCGGAGAA
GCAGTTCAAGGTGCAGGCCACTGCGCGTCCTCCGTCGCCTTTGAACACGG
GTCGCGGTGAACCCGGACCCTCCAAAGACACGGACGCAGAGGCAACAGGT
CCCGCCACGGATCCGATGAGTGAGCCGGAGCCTGCGCTGCAGAAGTCTCC
GTCGCCGCCTGTTCCGCAGAAGGTTCCGTCGCCAGCAGCTTCCGCTCCTC
CAGAGCCGGCCACCGAGGAGCCAGCTCCACAAACGGAGGCCACCGAAGAG
GCCTACTATTAACGAAGCTTTCTAGACCAT
BS01048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-RA | 846 | CG17118-PA | 1..846 | 17..862 | 4185 | 99.6 | Plus |
Bug22-RA | 600 | CG5343-PA | 381..452 | 397..468 | 225 | 87.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-RA | 979 | CG17118-RA | 45..890 | 17..862 | 4185 | 99.6 | Plus |
Bug22-RA | 943 | CG5343-RA | 585..656 | 397..468 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10730696..10731267 | 291..862 | 2815 | 99.5 | Plus |
2L | 23513712 | 2L | 10730440..10730631 | 101..292 | 960 | 100 | Plus |
2L | 23513712 | 2L | 10730299..10730382 | 17..100 | 420 | 100 | Plus |
2L | 23513712 | 2L | 10430207..10430278 | 468..397 | 225 | 87.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:41:17 has no hits.
BS01048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:35 Download gff for
BS01048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:54 Download gff for
BS01048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..890 | 6..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:44 Download gff for
BS01048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 45..891 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:35 Download gff for
BS01048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..890 | 6..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:39 Download gff for
BS01048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 45..891 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:39 Download gff for
BS01048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10730299..10730382 | 17..100 | 100 | -> | Plus |
2L | 10730440..10730631 | 101..292 | 100 | -> | Plus |
2L | 10730698..10731268 | 293..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:44 Download gff for
BS01048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10730299..10730382 | 17..100 | 100 | -> | Plus |
arm_2L | 10730440..10730631 | 101..292 | 100 | -> | Plus |
arm_2L | 10730698..10731268 | 293..864 | 99 | | Plus |
BS01048.pep Sequence
Translation from 16 to 861
> BS01048.pep
MYRAAYQKGFLTVLYSVGSSPLNNWSSYTKNGYIKRIYDEDIKSLVLEIM
GSNVSTTFIHCPSECKEQLGIKLPFLVLLIKNMHKYFCFEVKIQDDQRFM
RRFRVSNFQSKTSVKPFCTAMPMGMSPGWNQIQFNLADFTRRAYGSNYLE
TVSLQLHANVRIRRIYFADKLYTEAELPNDYRLMGKPKDLKKPEKQFKVQ
ATARPPSPLNTGRGEPGPSKDTDAEATGPATDPMSEPEPALQKSPSPPVP
QKVPSPAASAPPEPATEEPAPQTEATEEAYY*
BS01048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-PA | 281 | CG17118-PA | 1..281 | 1..281 | 1490 | 100 | Plus |
Bug22-PA | 199 | CG5343-PA | 1..183 | 1..183 | 642 | 62.8 | Plus |