Clone BS01048 Report

Search the DGRC for BS01048

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG17118-RA
Protein status:BS01048.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01048.3prime Sequence

878 bp (872 high quality bases) assembled on 2005-11-30

> BS01048.3prime
ATGGTCTAGAAAGCTTCGTTAATAGTAGGCCTCTTCGGTGGCCTCCGTTT
GTGGAGCTGGCTCCTCGGTGGCCGGCTCTGGAGGAGCGGAAGCTGCTGGC
GACGGAACCTTCTGCGGAACAGGCGGCGACGGAGACTTCTGCAGCGCAGG
CTCCGGCTCACTCATCGGATCCGTGGCGGGACCTGTTGCCTCTGCGTCCG
TGTCTTTGGAGGGTCCGGGTTCACCGCGACCCGTGTTCAAAGGCGACGGA
GGACGCGCAGTGGCCTGCACCTTGAACTGCTTCTCCGGCTTCTTCAGATC
CTTCGGCTTGCCCATCAGACGGTAGTCATTGGGCAATTCAGCCTCTGTGT
ATAGCTTATCGGCGAAGTAGATGCGCCGGATGCGTACGTTGGCATGCAGC
TGCAAGGATACCGTCTCCAGATAGTTGGAGCCGTAAGCACGGCGCGTGAA
GTCGGCCAGGTTAAACTGGATCTGGTTCCAGCCCGGTGACATGCCCATCG
GCATCGCCGTGCAGAAGGGCTTCACGGAGGTCTTGCTCTGGAAATTGGAC
ACTCGGAAACGGCGCATGAAGCGCTGATCGTCTTGAATCTTAACTTCGAA
GCAAAAGTACTTGTGCATGTTCTTTATAAGGAGCACCAGGAAGGGCAACT
TGATGCCCAGCTGCTCCTTGCATTCGCTGGGGCAGTGTATGAATGTGGTG
GACACATTTGAGCCCATTATCTCGAGCACCAGGGACTTGATGTCCTCATC
GTAGATCCGTTTGATATACCCGTTTTTGGTATAGGAAGACCAGTTGTTCA
NGGGCGAACTGCCTACGCTGTAAAGCACGGTAAGGAAACCTTTTTGATAG
GCTGCACGATACATGTCGACTGATAACT

BS01048.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17118-PA 846 CG17118-RA 1..846 864..19 4136 99.5 Minus
CG5343-PA 600 CG5343-RA 385..422 480..443 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17118-RA 979 CG17118-RA 45..890 864..19 4174 99.5 Minus
Bug22-RA 943 CG5343-RA 585..656 484..413 225 87.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10730696..10731267 590..19 2815 99.5 Minus
2L 23513712 2L 10730440..10730631 780..589 960 100 Minus
2L 23513712 2L 10730299..10730382 864..781 409 98.8 Minus
2L 23513712 2L 10430207..10430278 413..484 225 87.5 Plus
Blast to na_te.dros performed on 2015-02-12 18:56:18 has no hits.

BS01048.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:18 Download gff for BS01048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17118-PA 1..846 19..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:49 Download gff for BS01048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17118-PA 1..846 19..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:15:29 Download gff for BS01048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17118-RA 32..890 19..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:58 Download gff for BS01048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17118-RA 32..890 19..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:58 Download gff for BS01048.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10730286..10730382 781..875 94 -> Minus
2L 10730440..10730631 589..780 100 -> Minus
2L 10730698..10731267 19..588 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:29 Download gff for BS01048.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10730286..10730382 781..875 94 -> Minus
arm_2L 10730440..10730631 589..780 100 -> Minus
arm_2L 10730698..10731267 19..588 99   Minus

BS01048.5prime Sequence

879 bp (766 high quality bases) assembled on 2005-11-30

> BS01048.5prime
GAAGTTATCAGTCGACATGTATCGTGCAGCCTATCAAAAAGGTTTCCTTA
CCGTGCTTTACAGCGTAGGCAGTTCGCCCCTGAACAACTGGTCTTCCTAT
ACCAAAAACGGGTATATCAAACGGATCTACGATGAGGACATCAAGTCCCT
GGTGCTCGAGATAATGGGCTCAAATGTGTCCACCACATTCATACACTGCC
CCAGCGAATGCAAGGAGCAGCTGGGCATCAAGTTGCCCTTCCTGGTGCTC
CTTATAAAGAACATGCACAAGTACTTTTGCTTCGAAGTTAAGATTCAAGA
CGATCAGCGCTTCATGCGCCGTTTCCGAGTGTCCAATTTCCAGAGCAAGA
CCTCCGTGAAGCCCTTCTGCACGGCGATGCCGATGGGCATGTCACCGGGC
TGGAACCAGATCCAGTTTAACCTGGCCGACTTCACGCGCCGTGCTTACGG
CTCCAACTATCTGGAGACGGTATCCTTGCAGCTGCATGCCAACGTACGCA
TCCGGCGCATCTACTTCGCCGATAAGCTATACACAGAGGCTGAATTGCCC
AATGACTACCGTCTGATGGGCAAGCCGAAGGATCTGAAGAAGCCGGAGAA
GCAGTTCAAGGTGCAGGCCACTGCGCGTCCTCCGTCGCCTTTGAACACGG
GTCGCGGTGAACCCGGACCCTCCAAAGACACGGACGCAGAGGCAACAGGT
CCCGCCACGGATCCGATGAGTGAGCCGGAGCCTGCGCTGCAGAAGTCTCC
GTCGCCGCCTGTTCCGCAGAAGGTTCCGTCGCCAGCAGCTTCCGCTCCTC
CAGAGCCGGCCACCGAGGAGCCAGCTCCACAAACGGAGGCCACCGAAGAG
GCCTACTATTAACGAAGCTTTCTAGAACA

BS01048.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17118-PA 846 CG17118-RA 1..846 17..862 4155 99.6 Plus
CG5343-PA 600 CG5343-RA 385..422 401..438 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17118-RA 979 CG17118-RA 45..890 17..862 4185 99.6 Plus
Bug22-RA 943 CG5343-RA 585..656 397..468 225 87.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10730696..10731267 291..862 2815 99.5 Plus
2L 23513712 2L 10730440..10730631 101..292 960 100 Plus
2L 23513712 2L 10730299..10730382 17..100 420 100 Plus
2L 23513712 2L 10430207..10430278 468..397 225 87.5 Minus
Blast to na_te.dros performed on 2015-02-02 11:56:16 has no hits.

BS01048.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:19 Download gff for BS01048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17118-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:05:51 Download gff for BS01048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17118-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:54:50 Download gff for BS01048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17118-RA 32..890 6..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:37:01 Download gff for BS01048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17118-RA 32..890 6..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:37:01 Download gff for BS01048.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10730286..10730382 6..100 95 -> Plus
2L 10730440..10730631 101..292 100 -> Plus
2L 10730698..10731267 293..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:54:50 Download gff for BS01048.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10730286..10730382 6..100 95 -> Plus
arm_2L 10730440..10730631 101..292 100 -> Plus
arm_2L 10730698..10731267 293..862 99   Plus

BS01048.complete Sequence

880 bp (880 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634509

> BS01048.complete
GAAGTTATCAGTCGACATGTATCGTGCAGCCTATCAAAAAGGTTTCCTTA
CCGTGCTTTACAGCGTAGGCAGTTCGCCCCTGAACAACTGGTCTTCCTAT
ACCAAAAACGGGTATATCAAACGGATCTACGATGAGGACATCAAGTCCCT
GGTGCTCGAGATAATGGGCTCAAATGTGTCCACCACATTCATACACTGCC
CCAGCGAATGCAAGGAGCAGCTGGGCATCAAGTTGCCCTTCCTGGTGCTC
CTTATAAAGAACATGCACAAGTACTTTTGCTTCGAAGTTAAGATTCAAGA
CGATCAGCGCTTCATGCGCCGTTTCCGAGTGTCCAATTTCCAGAGCAAGA
CCTCCGTGAAGCCCTTCTGCACGGCGATGCCGATGGGCATGTCACCGGGC
TGGAACCAGATCCAGTTTAACCTGGCCGACTTCACGCGCCGTGCTTACGG
CTCCAACTATCTGGAGACGGTATCCTTGCAGCTGCATGCCAACGTACGCA
TCCGGCGCATCTACTTCGCCGATAAGCTATACACAGAGGCTGAATTGCCC
AATGACTACCGTCTGATGGGCAAGCCGAAGGATCTGAAGAAGCCGGAGAA
GCAGTTCAAGGTGCAGGCCACTGCGCGTCCTCCGTCGCCTTTGAACACGG
GTCGCGGTGAACCCGGACCCTCCAAAGACACGGACGCAGAGGCAACAGGT
CCCGCCACGGATCCGATGAGTGAGCCGGAGCCTGCGCTGCAGAAGTCTCC
GTCGCCGCCTGTTCCGCAGAAGGTTCCGTCGCCAGCAGCTTCCGCTCCTC
CAGAGCCGGCCACCGAGGAGCCAGCTCCACAAACGGAGGCCACCGAAGAG
GCCTACTATTAACGAAGCTTTCTAGACCAT

BS01048.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17118-RA 846 CG17118-PA 1..846 17..862 4185 99.6 Plus
Bug22-RA 600 CG5343-PA 381..452 397..468 225 87.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17118-RA 979 CG17118-RA 45..890 17..862 4185 99.6 Plus
Bug22-RA 943 CG5343-RA 585..656 397..468 225 87.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10730696..10731267 291..862 2815 99.5 Plus
2L 23513712 2L 10730440..10730631 101..292 960 100 Plus
2L 23513712 2L 10730299..10730382 17..100 420 100 Plus
2L 23513712 2L 10430207..10430278 468..397 225 87.5 Minus
Blast to na_te.dros performed on 2014-11-26 21:41:17 has no hits.

BS01048.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:35 Download gff for BS01048.complete
Subject Subject Range Query Range Percent Splice Strand
CG17118-RA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:54 Download gff for BS01048.complete
Subject Subject Range Query Range Percent Splice Strand
CG17118-RA 32..890 6..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:44 Download gff for BS01048.complete
Subject Subject Range Query Range Percent Splice Strand
CG17118-RA 45..891 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:35 Download gff for BS01048.complete
Subject Subject Range Query Range Percent Splice Strand
CG17118-RA 32..890 6..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:39 Download gff for BS01048.complete
Subject Subject Range Query Range Percent Splice Strand
CG17118-RA 45..891 17..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:39 Download gff for BS01048.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10730299..10730382 17..100 100 -> Plus
2L 10730440..10730631 101..292 100 -> Plus
2L 10730698..10731268 293..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:44 Download gff for BS01048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10730299..10730382 17..100 100 -> Plus
arm_2L 10730440..10730631 101..292 100 -> Plus
arm_2L 10730698..10731268 293..864 99   Plus

BS01048.pep Sequence

Translation from 16 to 861

> BS01048.pep
MYRAAYQKGFLTVLYSVGSSPLNNWSSYTKNGYIKRIYDEDIKSLVLEIM
GSNVSTTFIHCPSECKEQLGIKLPFLVLLIKNMHKYFCFEVKIQDDQRFM
RRFRVSNFQSKTSVKPFCTAMPMGMSPGWNQIQFNLADFTRRAYGSNYLE
TVSLQLHANVRIRRIYFADKLYTEAELPNDYRLMGKPKDLKKPEKQFKVQ
ATARPPSPLNTGRGEPGPSKDTDAEATGPATDPMSEPEPALQKSPSPPVP
QKVPSPAASAPPEPATEEPAPQTEATEEAYY*

BS01048.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17118-PA 281 CG17118-PA 1..281 1..281 1490 100 Plus
Bug22-PA 199 CG5343-PA 1..183 1..183 642 62.8 Plus