Clone BS01052 Report

Search the DGRC for BS01052

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptJra-RA
Protein status:BS01052.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01052.3prime Sequence

902 bp (756 high quality bases) assembled on 2005-11-30

> BS01052.3prime
ATGGTCTAGAAAGCTTCGTTATTGGTCTGTCGAGTTCGGCGGCACCGTGC
AGCCCGCGGCAATGTGCTCCATCACCTGCTGCTTCAGCTGCGCCACATGG
TCCTTGAGGTTCTTCACGATGCTAGCCAGGTCGACGTTCTCGCCCTTAAG
TACCTTCACGCGATCCTCCAGCTTTGAGATGCGCTCCAACTTGCGCTTGC
GGCACTTGGATGCAGCCACACGGTTACGCTGCCTCTTGCGCTCCAGCTTG
ATCTTCTCCTGCGCTTCCATGTCAATGGGATTAACGGTGGGCGAGCTGGC
TTGATTGACGGGCTCGTCCTTAATCACCGAGAAGCCCTCGGTCATGTTGG
TGTAGGTGAAGGTGCCTCCGCTGATGCCATTGTTCACCGCTGTCATGGCT
GCCGCAGTTGTGTTATTGGCGGCGGAATTAGCGGCGGAATTGGCGGACGG
AAATGCCTGGGAGTTAGTGTGAAGATTGTGTAAGGCCTCCTCGAATCCCC
TGCCGAAGTCCAACTGCTCCACGGTGACGGGCCCCGCCTTGGTGGGGAAC
ACCTTTCCCGGCTGCGGTGTTTGCATCAGATTGTTGGATAGCAGGATCTT
CTCCAAATCGGGTGTGTTTACCGTCTTGGATGACAGATCCGGTGAGTTGA
TGACCAGTGGTGCGAAGATGCGCTTGTTCTTGGCACTCTTGCTGTTCAGA
TCCAGCGAGCCGGGACGCTTGTTAGGATTCGGGGTGGATGTGTTCAGGTT
CGGCGACTGAAAGTCCAGTGACATGGGGCCTTCTTCTCCAACGGGCTCGG
TTTTAGGTATGATCTGAATGGGCAGTGCTCCGGAACTGCAAGCATTCTGA
ATACTTAAAGTCGCAGCAGCGGAAACGGGGGTTTTCATGTCGACTGATAA
CT

BS01052.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2275-PB 870 Jra-RB 68..870 821..19 4015 100 Minus
CG2275-PA 870 Jra-RA 68..870 821..19 4015 100 Minus
CG2275-PB 870 Jra-RB 1..63 888..826 240 95.2 Minus
CG2275-PA 870 Jra-RA 1..63 888..826 240 95.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Jra-RC 1525 CG2275-RC 234..1106 890..18 4275 99.4 Minus
Jra-RA 1525 CG2275-RA 234..1106 890..18 4275 99.4 Minus
Jra-RB 1565 CG2275-RB 274..1146 890..18 4275 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10097265..10098137 890..18 4260 99.2 Minus
Blast to na_te.dros performed on 2015-02-03 14:19:27 has no hits.

BS01052.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:26 Download gff for BS01052.3prime
Subject Subject Range Query Range Percent Splice Strand
Jra-PB 1..870 19..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:00 Download gff for BS01052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2275-PA 1..870 19..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:09:16 Download gff for BS01052.3prime
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 269..1150 10..895 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:56:20 Download gff for BS01052.3prime
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 269..1150 10..895 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:56:20 Download gff for BS01052.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10097267..10098141 10..888 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:09:16 Download gff for BS01052.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5984772..5985646 10..888 98   Minus

BS01052.5prime Sequence

863 bp (727 high quality bases) assembled on 2005-11-30

> BS01052.5prime
GAAGTTATCAGTCGACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAA
GTATTCAGAATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCT
AAAACCGAGCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTC
GCCGAACCTGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGC
TGGATCTGAACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTG
GTCATCAACTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTT
GGAGAAGATCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAA
AGGTGTTCCCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTC
GGCAGGGGATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGC
ATTTCCGTCCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTG
CGGCAGCCATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACC
TACACCAACATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAA
TCAAGCCAGCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGA
AGATCAAGCTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAG
TGCCGCAAGCGCAAGTTGGAGCGCATCTCAAAGCTGGAGGATCGCGTGAA
GGTACTTAAGGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCTCA
NGGGACATGTGGCGCAGCTGAAGCAGCAGGTGATGGAGCACATTGCCGCG
GGCTGCACGGTGC

BS01052.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2275-PB 870 Jra-RB 1..847 17..863 4166 99.6 Plus
CG2275-PA 870 Jra-RA 1..847 17..863 4166 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Jra-RC 1525 CG2275-RC 234..1082 15..863 4204 99.6 Plus
Jra-RA 1525 CG2275-RA 234..1082 15..863 4204 99.6 Plus
Jra-RB 1565 CG2275-RB 274..1122 15..863 4204 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10097265..10098113 15..863 4204 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 10:08:16 has no hits.

BS01052.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:27 Download gff for BS01052.5prime
Subject Subject Range Query Range Percent Splice Strand
Jra-PB 1..847 17..863 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:01 Download gff for BS01052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2275-PA 1..847 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:41:21 Download gff for BS01052.5prime
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 269..1122 10..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:27 Download gff for BS01052.5prime
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 269..1122 10..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:27 Download gff for BS01052.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10097267..10098113 17..863 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:41:21 Download gff for BS01052.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5984772..5985618 17..863 99   Plus

BS01052.complete Sequence

904 bp (904 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634511

> BS01052.complete
GAAGTTATCAGTCGACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAA
GTATTCAGAATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCT
AAAACCGAGCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTC
GCCGAACCTGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGC
TGGATCTGAACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTG
GTCATCAACTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTT
GGAGAAGATCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAA
AGGTGTTCCCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTC
GGCAGGGGATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGC
ATTTCCGTCCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTG
CGGCAGCCATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACC
TACACCAACATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAA
TCAAGCCAGCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGA
AGATCAAGCTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAG
TGCCGCAAGCGCAAGTTGGAGCGCATCTCAAAGCTGGAGGATCGCGTGAA
GGTACTTAAGGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCTCA
AGGACCATGTGGCGCAGCTGAAGCAGCAGGTGATGGAGCACATTGCCGCG
GGCTGCACGGTGCCGCCGAACTCGACAGACCAATAACGAAGCTTTCTAGA
CCAT

BS01052.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Jra-RC 1119 CG2275-PC 1..871 17..887 4355 100 Plus
Jra-RA 870 CG2275-PA 1..870 17..886 4350 100 Plus
Jra-RB 870 CG2275-PB 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
Jra-RC 1525 CG2275-RC 234..1106 15..887 4365 100 Plus
Jra-RA 1525 CG2275-RA 234..1106 15..887 4365 100 Plus
Jra-RB 1565 CG2275-RB 274..1146 15..887 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10097265..10098137 15..887 4365 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:17:57 has no hits.

BS01052.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:37 Download gff for BS01052.complete
Subject Subject Range Query Range Percent Splice Strand
Jra-RA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:57 Download gff for BS01052.complete
Subject Subject Range Query Range Percent Splice Strand
Jra-RA 220..1101 10..895 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:42 Download gff for BS01052.complete
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 276..1146 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:37 Download gff for BS01052.complete
Subject Subject Range Query Range Percent Splice Strand
Jra-RA 220..1101 10..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:30 Download gff for BS01052.complete
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 276..1146 17..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:30 Download gff for BS01052.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10097267..10098137 17..888 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:42 Download gff for BS01052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5984772..5985642 17..888 99   Plus

BS01052.pep Sequence

Translation from 16 to 885

> BS01052.pep
MKTPVSAAANLSIQNAGSSGATAIQIIPKTEPVGEEGPMSLDFQSPNLNT
STPNPNKRPGSLDLNSKSAKNKRIFAPLVINSPDLSSKTVNTPDLEKILL
SNNLMQTPQPGKVFPTKAGPVTVEQLDFGRGFEEALHNLHTNSQAFPSAN
SAANSAANNTTAAAMTAVNNGISGGTFTYTNMTEGFSVIKDEPVNQASSP
TVNPIDMEAQEKIKLERKRQRNRVAASKCRKRKLERISKLEDRVKVLKGE
NVDLASIVKNLKDHVAQLKQQVMEHIAAGCTVPPNSTDQ*

BS01052.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Jra-PA 289 CG2275-PA 1..289 1..289 1462 100 Plus
Jra-PB 289 CG2275-PB 1..289 1..289 1462 100 Plus
Jra-PC 372 CG2275-PC 1..289 1..289 1462 100 Plus