Clone Sequence Records
BS01052.3prime Sequence
902 bp (756 high quality bases) assembled on 2005-11-30
> BS01052.3prime
ATGGTCTAGAAAGCTTCGTTATTGGTCTGTCGAGTTCGGCGGCACCGTGC
AGCCCGCGGCAATGTGCTCCATCACCTGCTGCTTCAGCTGCGCCACATGG
TCCTTGAGGTTCTTCACGATGCTAGCCAGGTCGACGTTCTCGCCCTTAAG
TACCTTCACGCGATCCTCCAGCTTTGAGATGCGCTCCAACTTGCGCTTGC
GGCACTTGGATGCAGCCACACGGTTACGCTGCCTCTTGCGCTCCAGCTTG
ATCTTCTCCTGCGCTTCCATGTCAATGGGATTAACGGTGGGCGAGCTGGC
TTGATTGACGGGCTCGTCCTTAATCACCGAGAAGCCCTCGGTCATGTTGG
TGTAGGTGAAGGTGCCTCCGCTGATGCCATTGTTCACCGCTGTCATGGCT
GCCGCAGTTGTGTTATTGGCGGCGGAATTAGCGGCGGAATTGGCGGACGG
AAATGCCTGGGAGTTAGTGTGAAGATTGTGTAAGGCCTCCTCGAATCCCC
TGCCGAAGTCCAACTGCTCCACGGTGACGGGCCCCGCCTTGGTGGGGAAC
ACCTTTCCCGGCTGCGGTGTTTGCATCAGATTGTTGGATAGCAGGATCTT
CTCCAAATCGGGTGTGTTTACCGTCTTGGATGACAGATCCGGTGAGTTGA
TGACCAGTGGTGCGAAGATGCGCTTGTTCTTGGCACTCTTGCTGTTCAGA
TCCAGCGAGCCGGGACGCTTGTTAGGATTCGGGGTGGATGTGTTCAGGTT
CGGCGACTGAAAGTCCAGTGACATGGGGCCTTCTTCTCCAACGGGCTCGG
TTTTAGGTATGATCTGAATGGGCAGTGCTCCGGAACTGCAAGCATTCTGA
ATACTTAAAGTCGCAGCAGCGGAAACGGGGGTTTTCATGTCGACTGATAA
CT
BS01052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2275-PB | 870 | Jra-RB | 68..870 | 821..19 | 4015 | 100 | Minus |
CG2275-PA | 870 | Jra-RA | 68..870 | 821..19 | 4015 | 100 | Minus |
CG2275-PB | 870 | Jra-RB | 1..63 | 888..826 | 240 | 95.2 | Minus |
CG2275-PA | 870 | Jra-RA | 1..63 | 888..826 | 240 | 95.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jra-RC | 1525 | CG2275-RC | 234..1106 | 890..18 | 4275 | 99.4 | Minus |
Jra-RA | 1525 | CG2275-RA | 234..1106 | 890..18 | 4275 | 99.4 | Minus |
Jra-RB | 1565 | CG2275-RB | 274..1146 | 890..18 | 4275 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10097265..10098137 | 890..18 | 4260 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-03 14:19:27 has no hits.
BS01052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:26 Download gff for
BS01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-PB | 1..870 | 19..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:00 Download gff for
BS01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2275-PA | 1..870 | 19..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:09:16 Download gff for
BS01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 269..1150 | 10..895 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:56:20 Download gff for
BS01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 269..1150 | 10..895 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:56:20 Download gff for
BS01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10097267..10098141 | 10..888 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:09:16 Download gff for
BS01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5984772..5985646 | 10..888 | 98 | | Minus |
BS01052.5prime Sequence
863 bp (727 high quality bases) assembled on 2005-11-30
> BS01052.5prime
GAAGTTATCAGTCGACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAA
GTATTCAGAATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCT
AAAACCGAGCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTC
GCCGAACCTGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGC
TGGATCTGAACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTG
GTCATCAACTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTT
GGAGAAGATCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAA
AGGTGTTCCCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTC
GGCAGGGGATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGC
ATTTCCGTCCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTG
CGGCAGCCATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACC
TACACCAACATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAA
TCAAGCCAGCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGA
AGATCAAGCTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAG
TGCCGCAAGCGCAAGTTGGAGCGCATCTCAAAGCTGGAGGATCGCGTGAA
GGTACTTAAGGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCTCA
NGGGACATGTGGCGCAGCTGAAGCAGCAGGTGATGGAGCACATTGCCGCG
GGCTGCACGGTGC
BS01052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2275-PB | 870 | Jra-RB | 1..847 | 17..863 | 4166 | 99.6 | Plus |
CG2275-PA | 870 | Jra-RA | 1..847 | 17..863 | 4166 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jra-RC | 1525 | CG2275-RC | 234..1082 | 15..863 | 4204 | 99.6 | Plus |
Jra-RA | 1525 | CG2275-RA | 234..1082 | 15..863 | 4204 | 99.6 | Plus |
Jra-RB | 1565 | CG2275-RB | 274..1122 | 15..863 | 4204 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10097265..10098113 | 15..863 | 4204 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:08:16 has no hits.
BS01052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:27 Download gff for
BS01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-PB | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:01 Download gff for
BS01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2275-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:41:21 Download gff for
BS01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 269..1122 | 10..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:27 Download gff for
BS01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 269..1122 | 10..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:27 Download gff for
BS01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10097267..10098113 | 17..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:41:21 Download gff for
BS01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5984772..5985618 | 17..863 | 99 | | Plus |
BS01052.complete Sequence
904 bp (904 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634511
> BS01052.complete
GAAGTTATCAGTCGACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAA
GTATTCAGAATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCT
AAAACCGAGCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTC
GCCGAACCTGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGC
TGGATCTGAACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTG
GTCATCAACTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTT
GGAGAAGATCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAA
AGGTGTTCCCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTC
GGCAGGGGATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGC
ATTTCCGTCCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTG
CGGCAGCCATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACC
TACACCAACATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAA
TCAAGCCAGCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGA
AGATCAAGCTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAG
TGCCGCAAGCGCAAGTTGGAGCGCATCTCAAAGCTGGAGGATCGCGTGAA
GGTACTTAAGGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCTCA
AGGACCATGTGGCGCAGCTGAAGCAGCAGGTGATGGAGCACATTGCCGCG
GGCTGCACGGTGCCGCCGAACTCGACAGACCAATAACGAAGCTTTCTAGA
CCAT
BS01052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jra-RC | 1119 | CG2275-PC | 1..871 | 17..887 | 4355 | 100 | Plus |
Jra-RA | 870 | CG2275-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Jra-RB | 870 | CG2275-PB | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jra-RC | 1525 | CG2275-RC | 234..1106 | 15..887 | 4365 | 100 | Plus |
Jra-RA | 1525 | CG2275-RA | 234..1106 | 15..887 | 4365 | 100 | Plus |
Jra-RB | 1565 | CG2275-RB | 274..1146 | 15..887 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10097265..10098137 | 15..887 | 4365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:17:57 has no hits.
BS01052.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:37 Download gff for
BS01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:57 Download gff for
BS01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RA | 220..1101 | 10..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:42 Download gff for
BS01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 276..1146 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:37 Download gff for
BS01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RA | 220..1101 | 10..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:30 Download gff for
BS01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 276..1146 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:30 Download gff for
BS01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10097267..10098137 | 17..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:42 Download gff for
BS01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5984772..5985642 | 17..888 | 99 | | Plus |
BS01052.pep Sequence
Translation from 16 to 885
> BS01052.pep
MKTPVSAAANLSIQNAGSSGATAIQIIPKTEPVGEEGPMSLDFQSPNLNT
STPNPNKRPGSLDLNSKSAKNKRIFAPLVINSPDLSSKTVNTPDLEKILL
SNNLMQTPQPGKVFPTKAGPVTVEQLDFGRGFEEALHNLHTNSQAFPSAN
SAANSAANNTTAAAMTAVNNGISGGTFTYTNMTEGFSVIKDEPVNQASSP
TVNPIDMEAQEKIKLERKRQRNRVAASKCRKRKLERISKLEDRVKVLKGE
NVDLASIVKNLKDHVAQLKQQVMEHIAAGCTVPPNSTDQ*
BS01052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jra-PA | 289 | CG2275-PA | 1..289 | 1..289 | 1462 | 100 | Plus |
Jra-PB | 289 | CG2275-PB | 1..289 | 1..289 | 1462 | 100 | Plus |
Jra-PC | 372 | CG2275-PC | 1..289 | 1..289 | 1462 | 100 | Plus |