Clone Sequence Records
BS01054.3prime Sequence
654 bp (652 high quality bases) assembled on 2005-11-30
> BS01054.3prime
ATGGTCTAGAAAGCTTCGTCAGACTGAATAGAAGTGCGAGTTGAATCTTG
TGCGGCACGAGGGCTCCGTGAATGGTGAAAACCAGGCCAACGAGAAGCGT
CCGAACACCGACTGGATGCTCTTGAGGCGCGATTTCTTCGCCCAGCGGGC
CTCCTCCTTCTTCAGCTGTTCGATGCCCGTCTGATCGTTTAGGATAGCCG
TCAGCTGAGTGGCCAGCATGATGATGGTGAATATGCCGAACATAAGGCCC
TCAAAGGTGAGAAAAAGCAGCAGGAATATAGTGGCCGGCGGAGAGTACGG
CGAGCAGGTGCGCCAGTCGTTTTTCACGCACTCCGCGAACTGGGTGAGCA
CCAGGAAGAGCGTGTGCACGGAGATCGAAGCGATATAGAAGGTGAAGAGC
ACAAAGTACTTTTGATTGTTCTCGCCCACGCAATTATTTACCCACGGACA
GTGGTGATCCATCTTGCGGATGCAGCGCTGGCAGACGGAACAGTGATGAG
CTCGTTCCGGCTTGATACTGCAGCACTTGGGGCACTTGTAGAACATCTGA
CCCTCGCGGTAGCCCATCTGCTCGATCATCTCCTTGGTGGCATTTCCGCG
CGGTACAGCGCCCGGATCCGAGAGCATTGTGCGTATGTGCGAGGCGAAGG
CCAG
BS01054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-PA | 882 | CG8314-RA | 247..882 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-RA | 1280 | CG8314-RA | 387..1022 | 654..19 | 3180 | 100 | Minus |
CG5880-RA | 1526 | CG5880-RA | 587..662 | 500..425 | 200 | 84.2 | Minus |
Dnz1-RA | 1949 | CG6627-RA | 705..806 | 505..404 | 180 | 78.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15990452..15990674 | 391..613 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 15990169..15990382 | 177..390 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 15989941..15990100 | 19..178 | 800 | 100 | Plus |
2R | 25286936 | 2R | 15990858..15990900 | 612..654 | 215 | 100 | Plus |
2L | 23513712 | 2L | 10855775..10855876 | 404..505 | 180 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:07:39 has no hits.
BS01054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:28 Download gff for
BS01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-PA | 247..882 | 19..654 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:03 Download gff for
BS01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-PA | 247..882 | 19..654 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:34:15 Download gff for
BS01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 387..1022 | 19..654 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:04 Download gff for
BS01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 387..1022 | 19..654 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:04 Download gff for
BS01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15989941..15990099 | 19..177 | 100 | <- | Plus |
2R | 15990170..15990382 | 178..390 | 100 | <- | Plus |
2R | 15990452..15990673 | 391..612 | 100 | <- | Plus |
2R | 15990859..15990900 | 613..654 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:34:15 Download gff for
BS01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11877446..11877604 | 19..177 | 100 | <- | Plus |
arm_2R | 11877675..11877887 | 178..390 | 100 | <- | Plus |
arm_2R | 11877957..11878178 | 391..612 | 100 | <- | Plus |
arm_2R | 11878364..11878405 | 613..654 | 100 | | Plus |
BS01054.5prime Sequence
850 bp (758 high quality bases) assembled on 2005-11-30
> BS01054.5prime
GAAGTTATCAGTCGACATGAACTACTCGTACTCCGCGCTGTCGCCCGGCG
GTAGCGGAGGATTCGGTGGCGTTGACCAGCACAACCGATGTTGCGGAAAC
AAGGCCTGGTGCGTCAAGGACATCTGCGGCATTGTGTGCGTAATCATGAC
CTGGCTGCTTATCCTGTTCGCCGAATTCGTGGTCATGCGGCTGATCCTTC
TGCCCAGCAACTATACCGTCTTCAGTACCATCAACATGATCATATTCCAG
GCACTCGCCTTCCTGGCCTTCGCCTCGCACATACGCACAATGCTCTCGGA
TCCGGGCGCTGTACCGCGCGGAAATGCCACCAAGGAGATGATCGAGCAGA
TGGGCTACCGCGAGGGTCAGATGTTCTACAAGTGCCCCAAGTGCTGCAGT
ATCAAGCCGGAACGAGCTCATCACTGTTCCGTCTGCCAGCGCTGCATCCG
CAAGATGGATCACCACTGTCCGTGGGTAAATAATTGCGTGGGCGAGAACA
ATCAAAAGTACTTTGTGCTCTTCACCTTCTATATCGCTTCGATCTCCGTG
CACACGCTCTTCCTGGTGCTCACCCAGTTCGCGGAGTGCGTGAAAAACGA
CTGGCGCACCTGCTCGCCGTACTCTCCGCCGGCCACTATATTCCTGCTGC
TTTTTCTCACCTTTGAGGGCCTTATGTTCGGCATATTCACCATCATCATG
CTGGCCACTCAGCTGACGGCTATCCTAAACGATCAGACGGGCATCGAACA
GCTGAAGAAGGAGGAGGCCCGCTGGGCGAAGAAATCGCGCCCTCAGAGCA
TCCAGTCGGTGTTCGGACGCTTCTCGTTGGGCCTGGTTTCACCCATCACG
BS01054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-PA | 882 | CG8314-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
CG8314-PA | 882 | CG8314-RA | 779..814 | 795..830 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-RA | 1280 | CG8314-RA | 140..974 | 16..850 | 4055 | 99.3 | Plus |
CG5880-RA | 1526 | CG5880-RA | 587..662 | 417..492 | 200 | 84.2 | Plus |
Dnz1-RA | 1949 | CG6627-RA | 705..806 | 412..513 | 180 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15990858..15991147 | 305..16 | 1450 | 100 | Minus |
2R | 25286936 | 2R | 15990452..15990674 | 526..304 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 15990169..15990382 | 740..527 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 15989989..15990100 | 850..739 | 425 | 92 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:35:08 has no hits.
BS01054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:29 Download gff for
BS01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:04 Download gff for
BS01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:50:23 Download gff for
BS01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 140..974 | 16..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:22 Download gff for
BS01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 140..974 | 16..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:22 Download gff for
BS01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15990859..15991147 | 16..304 | 100 | | Minus |
2R | 15989989..15990099 | 740..850 | 94 | <- | Minus |
2R | 15990170..15990382 | 527..739 | 100 | <- | Minus |
2R | 15990452..15990673 | 305..526 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:50:23 Download gff for
BS01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11877494..11877604 | 740..850 | 94 | <- | Minus |
arm_2R | 11877675..11877887 | 527..739 | 100 | <- | Minus |
arm_2R | 11877957..11878178 | 305..526 | 100 | <- | Minus |
arm_2R | 11878364..11878652 | 16..304 | 100 | | Minus |
BS01054.complete Sequence
916 bp (916 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634512
> BS01054.complete
GAAGTTATCAGTCGACATGAACTACTCGTACTCCGCGCTGTCGCCCGGCG
GTAGCGGAGGATTCGGTGGCGTTGACCAGCACAACCGATGTTGCGGAAAC
AAGGCCTGGTGCGTCAAGGACATCTGCGGCATTGTGTGCGTAATCATGAC
CTGGCTGCTTATCCTGTTCGCCGAATTCGTGGTCATGCGGCTGATCCTTC
TGCCCAGCAACTATACCGTCTTCAGTACCATCAACATGATCATATTCCAG
GCACTCGCCTTCCTGGCCTTCGCCTCGCACATACGCACAATGCTCTCGGA
TCCGGGCGCTGTACCGCGCGGAAATGCCACCAAGGAGATGATCGAGCAGA
TGGGCTACCGCGAGGGTCAGATGTTCTACAAGTGCCCCAAGTGCTGCAGT
ATCAAGCCGGAACGAGCTCATCACTGTTCCGTCTGCCAGCGCTGCATCCG
CAAGATGGATCACCACTGTCCGTGGGTAAATAATTGCGTGGGCGAGAACA
ATCAAAAGTACTTTGTGCTCTTCACCTTCTATATCGCTTCGATCTCCGTG
CACACGCTCTTCCTGGTGCTCACCCAGTTCGCGGAGTGCGTGAAAAACGA
CTGGCGCACCTGCTCGCCGTACTCTCCGCCGGCCACTATATTCCTGCTGC
TTTTTCTCACCTTTGAGGGCCTTATGTTCGGCATATTCACCATCATCATG
CTGGCCACTCAGCTGACGGCTATCCTAAACGATCAGACGGGCATCGAACA
GCTGAAGAAGGAGGAGGCCCGCTGGGCGAAGAAATCGCGCCTCAAGAGCA
TCCAGTCGGTGTTCGGACGCTTCTCGTTGGCCTGGTTTTCACCATTCACG
GAGCCCTCGTGCCGCACAAGATTCAACTCGCACTTCTATTCAGTCTGACG
AAGCTTTCTAGACCAT
BS01054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-RA | 882 | CG8314-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
CG5880-RA | 1146 | CG5880-PA | 449..524 | 417..492 | 200 | 84.2 | Plus |
Dnz1-RA | 831 | CG6627-PA | 339..440 | 412..513 | 180 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-RA | 1280 | CG8314-RA | 140..1022 | 16..898 | 4415 | 100 | Plus |
CG5880-RA | 1526 | CG5880-RA | 587..662 | 417..492 | 200 | 84.2 | Plus |
Dnz1-RA | 1949 | CG6627-RA | 705..806 | 412..513 | 180 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15990858..15991147 | 305..16 | 1450 | 100 | Minus |
2R | 25286936 | 2R | 15990452..15990674 | 526..304 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 15990169..15990382 | 740..527 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 15989941..15990100 | 898..739 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:30 has no hits.
BS01054.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:36 Download gff for
BS01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 136..1018 | 16..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:35 Download gff for
BS01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 141..1023 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:22 Download gff for
BS01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 136..1018 | 16..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:10 Download gff for
BS01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 141..1023 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:10 Download gff for
BS01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15989939..15990099 | 740..900 | 99 | <- | Minus |
2R | 15990170..15990382 | 527..739 | 100 | <- | Minus |
2R | 15990452..15990673 | 305..526 | 100 | <- | Minus |
2R | 15990859..15991146 | 17..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:35 Download gff for
BS01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11877444..11877604 | 740..900 | 99 | <- | Minus |
arm_2R | 11877675..11877887 | 527..739 | 100 | <- | Minus |
arm_2R | 11877957..11878178 | 305..526 | 100 | <- | Minus |
arm_2R | 11878364..11878651 | 17..304 | 100 | | Minus |
BS01054.pep Sequence
Translation from 16 to 897
> BS01054.pep
MNYSYSALSPGGSGGFGGVDQHNRCCGNKAWCVKDICGIVCVIMTWLLIL
FAEFVVMRLILLPSNYTVFSTINMIIFQALAFLAFASHIRTMLSDPGAVP
RGNATKEMIEQMGYREGQMFYKCPKCCSIKPERAHHCSVCQRCIRKMDHH
CPWVNNCVGENNQKYFVLFTFYIASISVHTLFLVLTQFAECVKNDWRTCS
PYSPPATIFLLLFLTFEGLMFGIFTIIMLATQLTAILNDQTGIEQLKKEE
ARWAKKSRLKSIQSVFGRFSLAWFSPFTEPSCRTRFNSHFYSV*
BS01054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-PA | 293 | CG8314-PA | 1..293 | 1..293 | 1588 | 100 | Plus |
Dnz1-PA | 276 | CG6627-PA | 4..267 | 33..287 | 424 | 32.2 | Plus |
CG1407-PF | 449 | CG1407-PF | 10..295 | 34..276 | 269 | 27.6 | Plus |
CG1407-PG | 452 | CG1407-PG | 10..298 | 34..276 | 269 | 27.2 | Plus |
CG1407-PE | 440 | CG1407-PE | 10..286 | 34..276 | 266 | 27.2 | Plus |