Clone BS01054 Report

Search the DGRC for BS01054

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG8314-RA
Protein status:BS01054.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01054.3prime Sequence

654 bp (652 high quality bases) assembled on 2005-11-30

> BS01054.3prime
ATGGTCTAGAAAGCTTCGTCAGACTGAATAGAAGTGCGAGTTGAATCTTG
TGCGGCACGAGGGCTCCGTGAATGGTGAAAACCAGGCCAACGAGAAGCGT
CCGAACACCGACTGGATGCTCTTGAGGCGCGATTTCTTCGCCCAGCGGGC
CTCCTCCTTCTTCAGCTGTTCGATGCCCGTCTGATCGTTTAGGATAGCCG
TCAGCTGAGTGGCCAGCATGATGATGGTGAATATGCCGAACATAAGGCCC
TCAAAGGTGAGAAAAAGCAGCAGGAATATAGTGGCCGGCGGAGAGTACGG
CGAGCAGGTGCGCCAGTCGTTTTTCACGCACTCCGCGAACTGGGTGAGCA
CCAGGAAGAGCGTGTGCACGGAGATCGAAGCGATATAGAAGGTGAAGAGC
ACAAAGTACTTTTGATTGTTCTCGCCCACGCAATTATTTACCCACGGACA
GTGGTGATCCATCTTGCGGATGCAGCGCTGGCAGACGGAACAGTGATGAG
CTCGTTCCGGCTTGATACTGCAGCACTTGGGGCACTTGTAGAACATCTGA
CCCTCGCGGTAGCCCATCTGCTCGATCATCTCCTTGGTGGCATTTCCGCG
CGGTACAGCGCCCGGATCCGAGAGCATTGTGCGTATGTGCGAGGCGAAGG
CCAG

BS01054.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8314-PA 882 CG8314-RA 247..882 654..19 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8314-RA 1280 CG8314-RA 387..1022 654..19 3180 100 Minus
CG5880-RA 1526 CG5880-RA 587..662 500..425 200 84.2 Minus
Dnz1-RA 1949 CG6627-RA 705..806 505..404 180 78.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15990452..15990674 391..613 1115 100 Plus
2R 25286936 2R 15990169..15990382 177..390 1070 100 Plus
2R 25286936 2R 15989941..15990100 19..178 800 100 Plus
2R 25286936 2R 15990858..15990900 612..654 215 100 Plus
2L 23513712 2L 10855775..10855876 404..505 180 78.4 Plus
Blast to na_te.dros performed on 2015-02-10 23:07:39 has no hits.

BS01054.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:28 Download gff for BS01054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-PA 247..882 19..654 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:03 Download gff for BS01054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-PA 247..882 19..654 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:34:15 Download gff for BS01054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 387..1022 19..654 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:04 Download gff for BS01054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 387..1022 19..654 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:04 Download gff for BS01054.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15989941..15990099 19..177 100 <- Plus
2R 15990170..15990382 178..390 100 <- Plus
2R 15990452..15990673 391..612 100 <- Plus
2R 15990859..15990900 613..654 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:34:15 Download gff for BS01054.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11877446..11877604 19..177 100 <- Plus
arm_2R 11877675..11877887 178..390 100 <- Plus
arm_2R 11877957..11878178 391..612 100 <- Plus
arm_2R 11878364..11878405 613..654 100   Plus

BS01054.5prime Sequence

850 bp (758 high quality bases) assembled on 2005-11-30

> BS01054.5prime
GAAGTTATCAGTCGACATGAACTACTCGTACTCCGCGCTGTCGCCCGGCG
GTAGCGGAGGATTCGGTGGCGTTGACCAGCACAACCGATGTTGCGGAAAC
AAGGCCTGGTGCGTCAAGGACATCTGCGGCATTGTGTGCGTAATCATGAC
CTGGCTGCTTATCCTGTTCGCCGAATTCGTGGTCATGCGGCTGATCCTTC
TGCCCAGCAACTATACCGTCTTCAGTACCATCAACATGATCATATTCCAG
GCACTCGCCTTCCTGGCCTTCGCCTCGCACATACGCACAATGCTCTCGGA
TCCGGGCGCTGTACCGCGCGGAAATGCCACCAAGGAGATGATCGAGCAGA
TGGGCTACCGCGAGGGTCAGATGTTCTACAAGTGCCCCAAGTGCTGCAGT
ATCAAGCCGGAACGAGCTCATCACTGTTCCGTCTGCCAGCGCTGCATCCG
CAAGATGGATCACCACTGTCCGTGGGTAAATAATTGCGTGGGCGAGAACA
ATCAAAAGTACTTTGTGCTCTTCACCTTCTATATCGCTTCGATCTCCGTG
CACACGCTCTTCCTGGTGCTCACCCAGTTCGCGGAGTGCGTGAAAAACGA
CTGGCGCACCTGCTCGCCGTACTCTCCGCCGGCCACTATATTCCTGCTGC
TTTTTCTCACCTTTGAGGGCCTTATGTTCGGCATATTCACCATCATCATG
CTGGCCACTCAGCTGACGGCTATCCTAAACGATCAGACGGGCATCGAACA
GCTGAAGAAGGAGGAGGCCCGCTGGGCGAAGAAATCGCGCCCTCAGAGCA
TCCAGTCGGTGTTCGGACGCTTCTCGTTGGGCCTGGTTTCACCCATCACG

BS01054.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8314-PA 882 CG8314-RA 1..775 17..791 3875 100 Plus
CG8314-PA 882 CG8314-RA 779..814 795..830 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8314-RA 1280 CG8314-RA 140..974 16..850 4055 99.3 Plus
CG5880-RA 1526 CG5880-RA 587..662 417..492 200 84.2 Plus
Dnz1-RA 1949 CG6627-RA 705..806 412..513 180 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15990858..15991147 305..16 1450 100 Minus
2R 25286936 2R 15990452..15990674 526..304 1115 100 Minus
2R 25286936 2R 15990169..15990382 740..527 1070 100 Minus
2R 25286936 2R 15989989..15990100 850..739 425 92 Minus
Blast to na_te.dros performed on 2015-02-11 17:35:08 has no hits.

BS01054.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:29 Download gff for BS01054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-PA 1..834 17..850 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:04 Download gff for BS01054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-PA 1..834 17..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:50:23 Download gff for BS01054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 140..974 16..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:22 Download gff for BS01054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 140..974 16..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:22 Download gff for BS01054.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15990859..15991147 16..304 100   Minus
2R 15989989..15990099 740..850 94 <- Minus
2R 15990170..15990382 527..739 100 <- Minus
2R 15990452..15990673 305..526 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:50:23 Download gff for BS01054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11877494..11877604 740..850 94 <- Minus
arm_2R 11877675..11877887 527..739 100 <- Minus
arm_2R 11877957..11878178 305..526 100 <- Minus
arm_2R 11878364..11878652 16..304 100   Minus

BS01054.complete Sequence

916 bp (916 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634512

> BS01054.complete
GAAGTTATCAGTCGACATGAACTACTCGTACTCCGCGCTGTCGCCCGGCG
GTAGCGGAGGATTCGGTGGCGTTGACCAGCACAACCGATGTTGCGGAAAC
AAGGCCTGGTGCGTCAAGGACATCTGCGGCATTGTGTGCGTAATCATGAC
CTGGCTGCTTATCCTGTTCGCCGAATTCGTGGTCATGCGGCTGATCCTTC
TGCCCAGCAACTATACCGTCTTCAGTACCATCAACATGATCATATTCCAG
GCACTCGCCTTCCTGGCCTTCGCCTCGCACATACGCACAATGCTCTCGGA
TCCGGGCGCTGTACCGCGCGGAAATGCCACCAAGGAGATGATCGAGCAGA
TGGGCTACCGCGAGGGTCAGATGTTCTACAAGTGCCCCAAGTGCTGCAGT
ATCAAGCCGGAACGAGCTCATCACTGTTCCGTCTGCCAGCGCTGCATCCG
CAAGATGGATCACCACTGTCCGTGGGTAAATAATTGCGTGGGCGAGAACA
ATCAAAAGTACTTTGTGCTCTTCACCTTCTATATCGCTTCGATCTCCGTG
CACACGCTCTTCCTGGTGCTCACCCAGTTCGCGGAGTGCGTGAAAAACGA
CTGGCGCACCTGCTCGCCGTACTCTCCGCCGGCCACTATATTCCTGCTGC
TTTTTCTCACCTTTGAGGGCCTTATGTTCGGCATATTCACCATCATCATG
CTGGCCACTCAGCTGACGGCTATCCTAAACGATCAGACGGGCATCGAACA
GCTGAAGAAGGAGGAGGCCCGCTGGGCGAAGAAATCGCGCCTCAAGAGCA
TCCAGTCGGTGTTCGGACGCTTCTCGTTGGCCTGGTTTTCACCATTCACG
GAGCCCTCGTGCCGCACAAGATTCAACTCGCACTTCTATTCAGTCTGACG
AAGCTTTCTAGACCAT

BS01054.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8314-RA 882 CG8314-PA 1..882 17..898 4410 100 Plus
CG5880-RA 1146 CG5880-PA 449..524 417..492 200 84.2 Plus
Dnz1-RA 831 CG6627-PA 339..440 412..513 180 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8314-RA 1280 CG8314-RA 140..1022 16..898 4415 100 Plus
CG5880-RA 1526 CG5880-RA 587..662 417..492 200 84.2 Plus
Dnz1-RA 1949 CG6627-RA 705..806 412..513 180 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15990858..15991147 305..16 1450 100 Minus
2R 25286936 2R 15990452..15990674 526..304 1115 100 Minus
2R 25286936 2R 15990169..15990382 740..527 1070 100 Minus
2R 25286936 2R 15989941..15990100 898..739 800 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:02:30 has no hits.

BS01054.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:36 Download gff for BS01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 136..1018 16..898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:35 Download gff for BS01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 141..1023 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:22 Download gff for BS01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 136..1018 16..898 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:10 Download gff for BS01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 141..1023 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:10 Download gff for BS01054.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15989939..15990099 740..900 99 <- Minus
2R 15990170..15990382 527..739 100 <- Minus
2R 15990452..15990673 305..526 100 <- Minus
2R 15990859..15991146 17..304 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:35 Download gff for BS01054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11877444..11877604 740..900 99 <- Minus
arm_2R 11877675..11877887 527..739 100 <- Minus
arm_2R 11877957..11878178 305..526 100 <- Minus
arm_2R 11878364..11878651 17..304 100   Minus

BS01054.pep Sequence

Translation from 16 to 897

> BS01054.pep
MNYSYSALSPGGSGGFGGVDQHNRCCGNKAWCVKDICGIVCVIMTWLLIL
FAEFVVMRLILLPSNYTVFSTINMIIFQALAFLAFASHIRTMLSDPGAVP
RGNATKEMIEQMGYREGQMFYKCPKCCSIKPERAHHCSVCQRCIRKMDHH
CPWVNNCVGENNQKYFVLFTFYIASISVHTLFLVLTQFAECVKNDWRTCS
PYSPPATIFLLLFLTFEGLMFGIFTIIMLATQLTAILNDQTGIEQLKKEE
ARWAKKSRLKSIQSVFGRFSLAWFSPFTEPSCRTRFNSHFYSV*

BS01054.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8314-PA 293 CG8314-PA 1..293 1..293 1588 100 Plus
Dnz1-PA 276 CG6627-PA 4..267 33..287 424 32.2 Plus
CG1407-PF 449 CG1407-PF 10..295 34..276 269 27.6 Plus
CG1407-PG 452 CG1407-PG 10..298 34..276 269 27.2 Plus
CG1407-PE 440 CG1407-PE 10..286 34..276 266 27.2 Plus