Clone Sequence Records
BS01056.complete Sequence
928 bp assembled on 2009-05-14
GenBank Submission: KX797330
> BS01056.complete
GAAGTTATCAGTCGACATGACGATGAGTACAAACAACTGCGAGAGCATGA
CCTCGTACTTCACCAACTCGTACATGGGGGCGGACATGCATCATGGGCAC
TACCCGGGCAACGGGGTCACCGACCTGGACGCCCAGCAGATGCACCACTA
CAGCCAGAACGCGAATCACCAGGGCAACATGCCCTACCCGCGCTTTCCAC
CCTACGACCGCATGCCCTACTACAACGGCCAGGGGATGGACCAGCAGCAG
CAGCACCAGGTCTACTCCCGCCCGGACAGCCCCTCCAGCCAGGTGGGCGG
GGTCATGCCCCAGGCGCAGACCAACGGTCAGTTGGGTGTTCCCCAGCAGC
AACAGCAGCAGCAGCAACAGCCCTCGCAGAACCAGCAGCAACAGCAGGCG
CAGCAGGCCCCACAGCAACTGCAGCAGCAGCTGCCGCAGGTGACGCAACA
GGTGACACATCCGCAGCAGCAACAACAGCAGCCCGTCGTCTACGCCAGCT
GCAAGTTGCAAGCGGCCGTTGGTGGACTGGGTATGGTTCCCGAGGGCGGA
TCGCCTCCGCTGGTGGATCAAATGTCCGGTCACCACATGAACGCCCAGAT
GACGCTGCCCCATCACATGGGACATCCGCAGGCGCAGTTGGGCTATACGG
ACGTTGGAGTTCCCGACGTGACAGAGGTCCATCAGAACCATCACAACATG
GGCATGTACCAGCAGCAGTCGGGAGTTCCGCCGGTGGGTGCCCCACCTCA
GGGCATGATGCACCAGGGCCAGGGTCCTCCACAGATGCACCAGGGACATC
CTGGCCAACACACGCCTCCTTCCCAAAACCCGAACTCGCAGTCCTCGGGG
ATGCCGTCTCCACTGTATCCCTGGATGCGAAGTCAGTTTGGCAAGTGTCA
AGGAAAGTGACGAAGCTTTCTAGACCAT
BS01056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-RH | 894 | CG1028-PH | 1..894 | 17..910 | 4455 | 99.9 | Plus |
| Antp-RJ | 1137 | CG1028-PJ | 1..886 | 17..902 | 4415 | 99.9 | Plus |
| Antp-RI | 1137 | CG1028-PI | 1..886 | 17..902 | 4415 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-RH | 4111 | CG1028-RH | 1731..2624 | 17..910 | 4455 | 99.9 | Plus |
| Antp-RJ | 3490 | CG1028-RJ | 1731..2616 | 17..902 | 4415 | 99.9 | Plus |
| Antp-RI | 3279 | CG1028-RI | 1520..2405 | 17..902 | 4415 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6909290..6909910 | 637..17 | 3105 | 100 | Minus |
| 3R | 32079331 | 3R | 6908505..6908740 | 910..675 | 1165 | 99.6 | Minus |
| 3R | 32079331 | 3R | 6908871..6908915 | 678..634 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6851 | 343..482 | 337 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6900 | 344..480 | 316 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6923 | 344..479 | 275 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2497 | 344..503 | 266 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 344..483 | 259 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7004 | 220..482 | 251 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2415 | 377..482 | 242 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 366..504 | 238 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 383..482 | 203 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2726..2890 | 341..506 | 196 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2655 | 344..482 | 191 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 381..479 | 191 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 388..482 | 186 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6803 | 381..482 | 174 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2826 | 26..482 | 168 | 54.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1133 | 409..482 | 163 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6804 | 364..503 | 161 | 59 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8755..8922 | 342..505 | 154 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2657 | 240..504 | 145 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2376 | 413..482 | 134 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1578 | 377..482 | 123 | 60.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1011 | 357..482 | 120 | 60.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3346 | 357..517 | 115 | 56.2 | Plus |
BS01056.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-14 12:41:05 Download gff for
BS01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2627 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:52 Download gff for
BS01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2627 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:01 Download gff for
BS01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2627 | 17..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:01 Download gff for
BS01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6908502..6908738 | 677..912 | 99 | <- | Minus |
| 3R | 6908873..6908911 | 638..676 | 100 | <- | Minus |
| 3R | 6909290..6909910 | 17..637 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:52 Download gff for
BS01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2734224..2734460 | 677..912 | 99 | <- | Minus |
| arm_3R | 2734595..2734633 | 638..676 | 100 | <- | Minus |
| arm_3R | 2735012..2735632 | 17..637 | 100 | | Minus |
BS01056.3prime Sequence
926 bp (872 high quality bases) assembled on 2005-11-30
> BS01056.3prime
ATGGTCTAGAAAGCTTCGTCACTTTCCTTGACACTTGCCAAACTGACTTC
GCATCCAGGGATACAGTGGAGACGGCATCCCCGAGGACTGCGAGTTCGGG
TTTTGGGAAGGAGGCGTGTGTTGGCCAGGATGTCCCTGGTGCATCTGTGG
AGGACCCTGGCCCTGGTGCATCATGCCCTGAGGTGGGGCACCCACCGGCG
GAACTCCCGACTGCTGCTGGTACATGCCCATGTTGTGATGGTTCTGATGG
ACCTCTGTCACGTCGGGAACTCCAACGTCCGTATAGCCCAACTGCGCCTG
CGGATGTCCCATGTGATGGGGCAGCGTCATCTGGGCGTTCATGTGGTGAC
CGGACATTTGATCCACCAGCGGAGGCGATCCGCCCTCGGGAACCATACCC
AGTCCACCAACGGCCGCTTGCAACTTGCAGCTGGCGTAGACGACGGGCTG
CTGTTGTTGCTGCTGCGGATGTGTCACCTGTTGCGTCACCTGCGGCAGCT
GCTGCTGCAGTTGCTGTGGGGCCTGCTGCGCCTGCTGTTGCTGCTGGTTC
TGCGAGGGCTGTTGCTGCTGCTGCTGTTGCTGCTGGGGAACACCCAACTG
ACCGTTGGTCTGCGCCTGGGGCATGACCCCGCCCACCTGGCTGGAGGGGC
TGTCCGGGCGGGAGTAGACCTGGTGCTGCTGCTGCTGGTCCATCCCCTGG
CCGTTGTAGTAGGGCATGCGGTCGTAGGGTGGAAAGCGCGGGTAGGGCAT
GTTGCCCTGGTGATTCGCGTTCTGGCTGTAGTGGTGCATCTGCTGGGCGT
CCAGGTCGGTGACCCCGTTGCCCGGGTAGTGCCCATGATGCATGTCCGCC
CCCATGTACGAGTTGGTGAAGTACGAGGTCATGCTCTCGCAGTTGTTTGT
ACTCATCGTCATGTCGACTGATAACT
BS01056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1028-PH | 894 | Antp-RH | 1..894 | 912..19 | 4445 | 99.8 | Minus |
| CG1028-PL | 1137 | Antp-RL | 1..886 | 912..27 | 4405 | 99.8 | Minus |
| CG1028-PI | 1137 | Antp-RI | 1..886 | 912..27 | 4405 | 99.8 | Minus |
| CG1028-PJ | 1137 | Antp-RJ | 1..886 | 912..27 | 4405 | 99.8 | Minus |
| CG1028-PM | 1137 | Antp-RM | 1..886 | 912..27 | 4405 | 99.8 | Minus |
| CG1028-PD | 1125 | Antp-RD | 1..874 | 912..39 | 4370 | 100 | Minus |
| CG1028-PN | 1125 | Antp-RN | 1..874 | 912..39 | 4370 | 100 | Minus |
| CG1028-PF | 1098 | Antp-RF | 1..621 | 912..292 | 3105 | 100 | Minus |
| CG1028-PE | 1098 | Antp-RE | 1..621 | 912..292 | 3105 | 100 | Minus |
| CG1028-PK | 1086 | Antp-RK | 1..621 | 912..292 | 3105 | 100 | Minus |
| CG1028-PG | 1086 | Antp-RG | 1..621 | 912..292 | 3105 | 100 | Minus |
| CG1028-PF | 1098 | Antp-RF | 620..847 | 254..27 | 1115 | 99.5 | Minus |
| CG1028-PE | 1098 | Antp-RE | 620..847 | 254..27 | 1115 | 99.5 | Minus |
| CG1028-PK | 1086 | Antp-RK | 620..835 | 254..39 | 1080 | 100 | Minus |
| CG1028-PG | 1086 | Antp-RG | 620..835 | 254..39 | 1080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-RH | 4111 | CG1028-RH | 1731..2624 | 912..19 | 4455 | 99.9 | Minus |
| Antp-RJ | 3490 | CG1028-RJ | 1731..2616 | 912..27 | 4415 | 99.9 | Minus |
| Antp-RI | 3279 | CG1028-RI | 1520..2405 | 912..27 | 4415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6909290..6909910 | 292..912 | 3105 | 100 | Plus |
| 3R | 32079331 | 3R | 6908505..6908740 | 19..254 | 1165 | 99.6 | Plus |
| 3R | 32079331 | 3R | 6908871..6908915 | 251..295 | 225 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 16:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6851 | 586..447 | 337 | 75 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6900 | 585..449 | 316 | 72.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6923 | 585..450 | 275 | 71.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2497 | 585..426 | 266 | 65 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 585..446 | 259 | 65 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7004 | 709..447 | 251 | 60.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2415 | 552..447 | 242 | 69.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 563..425 | 238 | 64.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 546..447 | 203 | 67 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2726..2890 | 588..423 | 196 | 60.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2655 | 585..447 | 191 | 61.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 548..450 | 191 | 67.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 541..447 | 186 | 67.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6803 | 548..447 | 174 | 70.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2826 | 903..447 | 168 | 54.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1133 | 520..447 | 163 | 68.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6804 | 565..426 | 161 | 59 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8755..8922 | 587..424 | 154 | 58 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2657 | 689..425 | 145 | 55.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2376 | 516..447 | 134 | 65.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1578 | 552..447 | 123 | 60.9 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1011 | 572..447 | 120 | 60.3 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3346 | 572..412 | 115 | 56.2 | Minus |
BS01056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:32 Download gff for
BS01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-PH | 1..894 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:08 Download gff for
BS01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1028-PH | 1..894 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:26:29 Download gff for
BS01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2628 | 16..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:24 Download gff for
BS01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2628 | 16..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:24 Download gff for
BS01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6908501..6908738 | 16..252 | 99 | <- | Plus |
| 3R | 6908873..6908911 | 253..291 | 100 | <- | Plus |
| 3R | 6909290..6909910 | 292..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:26:29 Download gff for
BS01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2734223..2734460 | 16..252 | 99 | <- | Plus |
| arm_3R | 2734595..2734633 | 253..291 | 100 | <- | Plus |
| arm_3R | 2735012..2735632 | 292..912 | 100 | | Plus |
BS01056.5prime Sequence
902 bp (747 high quality bases) assembled on 2005-11-30
> BS01056.5prime
GAAGTTATCAGTCGACATGACGATGAGTACAAACAACTGCGAGAGCATGA
CCTCGTACTTCACCAACTCGTACATGGGGGCGGACATGCATCATGGGCAC
TACCCGGGCAACGGGGTCACCGACCTGGACGCCCAGCAGATGCACCACTA
CAGCCAGAACGCGAATCACCAGGGCAACATGCCCTACCCGCGCTTTCCAC
CCTACGACCGCATGCCCTACTACAACGGCCAGGGGATGGACCAGCAGCAG
CAGCACCAGGTCTACTCCCGCCCGGACAGCCCCTCCAGCCAGGTGGGCGG
GGTCATGCCCCAGGCGCAGACCAACGGTCAGTTGGGTGTTCCCCAGCAGC
AACAGCAGCAGCAGCAACAGCCCTCGCAGAACCAGCAGCAACAGCAGGCG
CAGCAGGCCCCACAGCAACTGCAGCAGCAGCTGCCGCAGGTGACGCAACA
GGTGACACATCCGCAGCAGCAACAACAGCAGCCCGTCGTCTACGCCAGCT
GCAAGTTGCAAGCGGCCGTTGGTGGACTGGGTATGGTTCCCGAGGGCGGA
TCGCCTCCGCTGGTGGATCAAATGTCCGGTCACCACATGAACGCCCAGAT
GACGCTGCCCCATCACATGGGACATCCGCAGGCGCAGTTGGGCTATACGG
ACGTTGGAGTTCCCGACGTGACAGAGGTCCATCAGAACCATCACAACATG
GGCATGTACCAGCAGCAGTCGGGAGTTCCGCCGGTGGGTGCCCCACCTCA
GGGCATGATGCACCAGGGCCAGGGTCCTCCACAGATGCACCAGGGACATC
CTGGGCCACACACGCCTCCTTCCCAAAACCCGAACTCGCAGTCCTCGGGG
ATGCCGTCTCCACTGTATCCCTGGATGCGAAGTCAGTTTTGGCAAGTGTC
AA
BS01056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1028-PL | 1137 | Antp-RL | 1..873 | 17..889 | 4315 | 99.7 | Plus |
| CG1028-PI | 1137 | Antp-RI | 1..873 | 17..889 | 4315 | 99.7 | Plus |
| CG1028-PJ | 1137 | Antp-RJ | 1..873 | 17..889 | 4315 | 99.7 | Plus |
| CG1028-PH | 894 | Antp-RH | 1..873 | 17..889 | 4315 | 99.7 | Plus |
| CG1028-PM | 1137 | Antp-RM | 1..873 | 17..889 | 4315 | 99.7 | Plus |
| CG1028-PD | 1125 | Antp-RD | 1..873 | 17..889 | 4315 | 99.7 | Plus |
| CG1028-PN | 1125 | Antp-RN | 1..873 | 17..889 | 4315 | 99.7 | Plus |
| CG1028-PF | 1098 | Antp-RF | 1..621 | 17..637 | 3105 | 100 | Plus |
| CG1028-PK | 1086 | Antp-RK | 1..621 | 17..637 | 3105 | 100 | Plus |
| CG1028-PG | 1086 | Antp-RG | 1..621 | 17..637 | 3105 | 100 | Plus |
| CG1028-PE | 1098 | Antp-RE | 1..621 | 17..637 | 3105 | 100 | Plus |
| CG1028-PF | 1098 | Antp-RF | 620..834 | 675..889 | 1025 | 99 | Plus |
| CG1028-PK | 1086 | Antp-RK | 620..834 | 675..889 | 1025 | 99 | Plus |
| CG1028-PG | 1086 | Antp-RG | 620..834 | 675..889 | 1025 | 99 | Plus |
| CG1028-PE | 1098 | Antp-RE | 620..834 | 675..889 | 1025 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:09:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-RJ | 3490 | CG1028-RJ | 1731..2615 | 17..902 | 4360 | 99.5 | Plus |
| Antp-RI | 3279 | CG1028-RI | 1520..2404 | 17..902 | 4360 | 99.5 | Plus |
| Antp-RL | 4902 | CG1028-RL | 1731..2615 | 17..902 | 4360 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6909290..6909910 | 637..17 | 3105 | 100 | Minus |
| 3R | 32079331 | 3R | 6908526..6908740 | 889..675 | 1045 | 99.1 | Minus |
| 3R | 32079331 | 3R | 6908871..6908915 | 678..634 | 225 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 03:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6851 | 343..482 | 337 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6900 | 344..480 | 316 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6923 | 344..479 | 275 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2497 | 344..503 | 266 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 344..483 | 259 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7004 | 220..482 | 251 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2415 | 377..482 | 242 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 366..504 | 238 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 383..482 | 203 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2726..2890 | 341..506 | 196 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2655 | 344..482 | 191 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 381..479 | 191 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 388..482 | 186 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6803 | 381..482 | 174 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2826 | 26..482 | 168 | 54.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1133 | 409..482 | 163 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6804 | 364..503 | 161 | 59 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8755..8922 | 342..505 | 154 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2657 | 240..504 | 145 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2376 | 413..482 | 134 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1578 | 377..482 | 123 | 60.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1011 | 357..482 | 120 | 60.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3346 | 357..517 | 115 | 56.2 | Plus |
BS01056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:34 Download gff for
BS01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-PN | 1..876 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:09 Download gff for
BS01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1028-PH | 1..883 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:06 Download gff for
BS01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RL | 1731..2613 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:13:54 Download gff for
BS01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RL | 1731..2613 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:13:54 Download gff for
BS01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6908516..6908738 | 677..900 | 98 | <- | Minus |
| 3R | 6908873..6908911 | 638..676 | 100 | <- | Minus |
| 3R | 6909290..6909910 | 17..637 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:06 Download gff for
BS01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2734238..2734460 | 677..900 | 98 | <- | Minus |
| arm_3R | 2734595..2734633 | 638..676 | 100 | <- | Minus |
| arm_3R | 2735012..2735632 | 17..637 | 100 | | Minus |
BS01056.pep Sequence
Translation from 16 to 909
> BS01056.pep
MTMSTNNCESMTSYFTNSYMGADMHHGHYPGNGVTDLDAQQMHHYSQNAN
HQGNMPYPRFPPYDRMPYYNGQGMDQQQQHQVYSRPDSPSSQVGGVMPQA
QTNGQLGVPQQQQQQQQQPSQNQQQQQAQQAPQQLQQQLPQVTQQVTHPQ
QQQQQPVVYASCKLQAAVGGLGMVPEGGSPPLVDQMSGHHMNAQMTLPHH
MGHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQQQSGVPPVGAPPQGMMHQ
GQGPPQMHQGHPGQHTPPSQNPNSQSSGMPSPLYPWMRSQFGKCQGK*
BS01056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-PH | 297 | CG1028-PH | 1..297 | 1..297 | 1655 | 100 | Plus |
| Antp-PJ | 378 | CG1028-PJ | 1..295 | 1..295 | 1644 | 100 | Plus |
| Antp-PI | 378 | CG1028-PI | 1..295 | 1..295 | 1644 | 100 | Plus |
| Antp-PL | 378 | CG1028-PL | 1..295 | 1..295 | 1644 | 100 | Plus |
| Antp-PM | 378 | CG1028-PM | 1..295 | 1..295 | 1644 | 100 | Plus |
