Clone Sequence Records
BS01058.3prime Sequence
948 bp (805 high quality bases) assembled on 2005-11-30
> BS01058.3prime
ATGGTCTAGAAAGCTTCGTCACCCCTCATCCTCCTCTGTTTTGATCTTAA
CAGGAACGTAGACTTTGTCCATGACGTGTATTTTTATGTGGTTGTTGAGC
GTGCTGGACTGTCGGAACTGCTTCTTGCAGATGACACACTCAAAAGGCTT
TTCACCCGTGTGGATCTTCACATGGTTGGCCAGCGTGCTCAGTTGTCGAA
AATGCTTGGGACAAAAGTTGCAGTTATAAGGCTTCTCGCCCGTATGGATC
TTCAGATGGTTCGTCAGCGTCGACGATTGACGGAAGGTCTTATCACAAAC
GTTGCATTTGTAGGGCTTCTCGCCAGTATGGATCTTTACATGGTTGGTCA
GTGTGCTTAGCTGTCGAAAGCGACGATCGCAGACGGTGCAGTGGAAAGGT
TTCTCCGGCTCGCGGACAGCTCCCCCTACGCCAACGGCAGCGTTGCCCTC
TCCGGGATGCTCGCTATGTCCATTGGCCAGGTAATGCTCACTGTGGATCG
TTGTCGGACTATGCGTGGTCAGGTGCGTCAGATGTGAAGTTGGTGGCGGC
GGTTGCTGTTGTTCCGCCGCAGCAGCTTGGGCTGCTGCAGCTTGGGCAGC
TGCCATAGCCGCTGCTTGGGCGGCACTATGCGCCTCCGCCGAGATCCCGC
TTAAGTGCATCTGGAAGGGCAAGGGGAGTTCCGTGGGTGGCGGCGGCACA
GAGGGTGGTCCGCTCGACTGCTGTTGCTGCTGCTGATGATGTTGCTGCTG
CTGTTGCTGTTGTTGTTGCTGCTGCTGTTGAACCGCCGCCATGTGAGCCG
GATGCGTGGCCTGGGTGACCGTCTCATTGTTATTATTGTTTGCTATGGTG
GTTGGGGGCTGGGCGGCCACTATGACAATGTCGCAGTTACTGCTCATCGC
CGTAGCAGCGGCATGGGCATGGGGCAGGCTTTTGATATGCATCATGTC
BS01058.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5683-PA | 927 | Aef1-RA | 1..927 | 945..19 | 4610 | 99.8 | Minus |
CG5683-PC | 927 | Aef1-RC | 1..927 | 945..19 | 4610 | 99.8 | Minus |
CG5683-PB | 927 | Aef1-RB | 1..927 | 945..19 | 4610 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aef1-RD | 2684 | CG5683-RD | 475..1403 | 946..18 | 4630 | 99.9 | Minus |
Aef1-RB | 2579 | CG5683-RB | 370..1298 | 946..18 | 4630 | 99.9 | Minus |
Aef1-RC | 2622 | CG5683-RC | 413..1341 | 946..18 | 4630 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21435219..21436013 | 946..152 | 3960 | 99.9 | Minus |
3L | 28110227 | 3L | 21436072..21436210 | 156..18 | 695 | 100 | Minus |
3L | 28110227 | 3L | 21435814..21435937 | 267..144 | 215 | 78.2 | Minus |
3L | 28110227 | 3L | 21435898..21436014 | 351..235 | 195 | 77.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:36:01 has no hits.
BS01058.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:37 Download gff for
BS01058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-PB | 1..927 | 19..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:13 Download gff for
BS01058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5683-PB | 1..927 | 19..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:26:22 Download gff for
BS01058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-RC | 410..1341 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:30 Download gff for
BS01058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-RC | 410..1341 | 18..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:30 Download gff for
BS01058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21435216..21436009 | 156..948 | 99 | -> | Minus |
3L | 21436073..21436210 | 18..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:26:22 Download gff for
BS01058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21428316..21429109 | 156..948 | 99 | -> | Minus |
arm_3L | 21429173..21429310 | 18..155 | 100 | | Minus |
BS01058.5prime Sequence
832 bp (806 high quality bases) assembled on 2005-11-30
> BS01058.5prime
GAAGTTATCAGTCGACATGATGCATATCAAAAGCCTGCCCCATGCCCATG
CCGCTGCTACGGCGATGAGCAGTAACTGCGACATTGTCATAGTGGCCGCC
CAGCCCCAAACCACCATAGCAAACAATAATAACAATGAGACGGTCACCCA
GGCCACGCATCCGGCTCACATGGCGGCGGTTCAACAGCAGCAGCAACAAC
AACAGCAACAGCAGCAGCAACATCATCAGCAGCAGCAACAGCAGTCGAGC
GGACCACCCTCTGTGCCGCCGCCACCCACGGAACTCCCCTTGCCCTTCCA
GATGCACTTAAGCGGGATCTCGGCGGAGGCGCATAGTGCCGCCCAAGCAG
CGGCTATGGCAGCTGCCCAAGCTGCAGCAGCCCAAGCTGCTGCGGCGGAA
CAACAGCAACCGCCGCCACCAACTTCACATCTGACGCACCTGACCACGCA
TAGTCCGACAACGATCCACAGTGAGCATTACCTGGCCAATGGACATAGCG
AGCATCCCGGAGAGGGCAACGCTGCCGTTGGCGTAGGGGGAGCTGTCCGC
GAGCCGGAGAAACCTTTCCACTGCACCGTCTGCGATCGTCGCTTTCGACA
GCTAAGCACACTGACCAACCATGTAAAGATCCATACTGGCGAGAAGCCCT
ACAAATGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCGACGCTGACG
AACCATCTGAAGATCCATACGGGCGAGAAGCCTTATAACTGCAACTTTTG
TCCCAAGCATTTTCGACAACTGAGCACGCTGGCCAACCATGTGAAGATCC
ACACGGGTGAAAAGCCTTTTGAGTGTGTCATC
BS01058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5683-PA | 927 | Aef1-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
CG5683-PC | 927 | Aef1-RC | 1..816 | 17..832 | 4080 | 100 | Plus |
CG5683-PB | 927 | Aef1-RB | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aef1-RD | 2684 | CG5683-RD | 475..1291 | 16..832 | 4085 | 100 | Plus |
Aef1-RB | 2579 | CG5683-RB | 370..1186 | 16..832 | 4085 | 100 | Plus |
Aef1-RC | 2622 | CG5683-RC | 413..1229 | 16..832 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21435219..21436013 | 16..810 | 3975 | 100 | Plus |
3L | 28110227 | 3L | 21435814..21435937 | 695..818 | 215 | 78.2 | Plus |
3L | 28110227 | 3L | 21435898..21436014 | 611..727 | 195 | 77.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:47:19 has no hits.
BS01058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:38 Download gff for
BS01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:14 Download gff for
BS01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5683-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:36:47 Download gff for
BS01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-RC | 403..1229 | 2..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:46 Download gff for
BS01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-RC | 403..1229 | 2..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:46 Download gff for
BS01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21435209..21436009 | 2..806 | 99 | -> | Plus |
3L | 21436073..21436098 | 807..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:36:47 Download gff for
BS01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21428309..21429109 | 2..806 | 99 | -> | Plus |
arm_3L | 21429173..21429198 | 807..832 | 100 | | Plus |
BS01058.complete Sequence
961 bp (961 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634513
> BS01058.complete
GAAGTTATCAGTCGACATGATGCATATCAAAAGCCTGCCCCATGCCCATG
CCGCTGCTACGGCGATGAGCAGTAACTGCGACATTGTCATAGTGGCCGCC
CAGCCCCAAACCACCATAGCAAACAATAATAACAATGAGACGGTCACCCA
GGCCACGCATCCGGCTCACATGGCGGCGGTTCAACAGCAGCAGCAACAAC
AACAGCAACAGCAGCAGCAACATCATCAGCAGCAGCAACAGCAGTCGAGC
GGACCACCCTCTGTGCCGCCGCCACCCACGGAACTCCCCTTGCCCTTCCA
GATGCACTTAAGCGGGATCTCGGCGGAGGCGCATAGTGCCGCCCAAGCAG
CGGCTATGGCAGCTGCCCAAGCTGCAGCAGCCCAAGCTGCTGCGGCGGAA
CAACAGCAACCGCCGCCACCAACTTCACATCTGACGCACCTGACCACGCA
TAGTCCGACAACGATCCACAGTGAGCATTACCTGGCCAATGGACATAGCG
AGCATCCCGGAGAGGGCAACGCTGCCGTTGGCGTAGGGGGAGCTGTCCGC
GAGCCGGAGAAACCTTTCCACTGCACCGTCTGCGATCGTCGCTTTCGACA
GCTAAGCACACTGACCAACCATGTAAAGATCCATACTGGCGAGAAGCCCT
ACAAATGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCGACGCTGACG
AACCATCTGAAGATCCATACGGGCGAGAAGCCTTATAACTGCAACTTTTG
TCCCAAGCATTTTCGACAACTGAGCACGCTGGCCAACCATGTGAAGATCC
ACACGGGTGAAAAGCCTTTTGAGTGTGTCATCTGCAAGAAGCAGTTCCGA
CAGTCCAGCACGCTCAACAACCACATAAAAATACACGTCATGGACAAAGT
CTACGTTCCTGTTAAGATCAAAACAGAGGAGGATGAGGGGTGACGAAGCT
TTCTAGACCAT
BS01058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aef1-RD | 1365 | CG5683-PD | 1..928 | 17..944 | 4640 | 100 | Plus |
Aef1-RB | 927 | CG5683-PB | 1..927 | 17..943 | 4635 | 100 | Plus |
Aef1-RC | 927 | CG5683-PC | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aef1-RD | 2684 | CG5683-RD | 475..1403 | 16..944 | 4645 | 100 | Plus |
Aef1-RB | 2579 | CG5683-RB | 370..1298 | 16..944 | 4645 | 100 | Plus |
Aef1-RC | 2622 | CG5683-RC | 413..1341 | 16..944 | 4645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21435219..21436013 | 16..810 | 3975 | 100 | Plus |
3L | 28110227 | 3L | 21436072..21436210 | 806..944 | 695 | 100 | Plus |
3L | 28110227 | 3L | 21435814..21435937 | 695..818 | 215 | 78.2 | Plus |
3L | 28110227 | 3L | 21435898..21436014 | 611..727 | 195 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:36:33 has no hits.
BS01058.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:23 Download gff for
BS01058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-RB | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:38 Download gff for
BS01058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-RB | 349..1287 | 2..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:19 Download gff for
BS01058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-RC | 414..1341 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:23 Download gff for
BS01058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-RB | 349..1287 | 2..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:28 Download gff for
BS01058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aef1-RC | 414..1341 | 17..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:28 Download gff for
BS01058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21435220..21436009 | 17..806 | 100 | -> | Plus |
3L | 21436073..21436210 | 807..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:19 Download gff for
BS01058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21428320..21429109 | 17..806 | 100 | -> | Plus |
arm_3L | 21429173..21429310 | 807..945 | 99 | | Plus |
BS01058.pep Sequence
Translation from 16 to 942
> BS01058.pep
MMHIKSLPHAHAAATAMSSNCDIVIVAAQPQTTIANNNNNETVTQATHPA
HMAAVQQQQQQQQQQQQQHHQQQQQQSSGPPSVPPPPTELPLPFQMHLSG
ISAEAHSAAQAAAMAAAQAAAAQAAAAEQQQPPPPTSHLTHLTTHSPTTI
HSEHYLANGHSEHPGEGNAAVGVGGAVREPEKPFHCTVCDRRFRQLSTLT
NHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNFCPKHFR
QLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVK
IKTEEDEG*
BS01058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aef1-PB | 308 | CG5683-PB | 1..308 | 1..308 | 1653 | 100 | Plus |
Aef1-PC | 308 | CG5683-PC | 1..308 | 1..308 | 1653 | 100 | Plus |
Aef1-PA | 308 | CG5683-PA | 1..308 | 1..308 | 1653 | 100 | Plus |
Aef1-PD | 454 | CG5683-PD | 1..308 | 1..308 | 1653 | 100 | Plus |
odd-PA | 392 | CG3851-PA | 65..326 | 39..290 | 372 | 35.4 | Plus |