Clone BS01058 Report

Search the DGRC for BS01058

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptAef1-RA
Protein status:BS01058.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01058.3prime Sequence

948 bp (805 high quality bases) assembled on 2005-11-30

> BS01058.3prime
ATGGTCTAGAAAGCTTCGTCACCCCTCATCCTCCTCTGTTTTGATCTTAA
CAGGAACGTAGACTTTGTCCATGACGTGTATTTTTATGTGGTTGTTGAGC
GTGCTGGACTGTCGGAACTGCTTCTTGCAGATGACACACTCAAAAGGCTT
TTCACCCGTGTGGATCTTCACATGGTTGGCCAGCGTGCTCAGTTGTCGAA
AATGCTTGGGACAAAAGTTGCAGTTATAAGGCTTCTCGCCCGTATGGATC
TTCAGATGGTTCGTCAGCGTCGACGATTGACGGAAGGTCTTATCACAAAC
GTTGCATTTGTAGGGCTTCTCGCCAGTATGGATCTTTACATGGTTGGTCA
GTGTGCTTAGCTGTCGAAAGCGACGATCGCAGACGGTGCAGTGGAAAGGT
TTCTCCGGCTCGCGGACAGCTCCCCCTACGCCAACGGCAGCGTTGCCCTC
TCCGGGATGCTCGCTATGTCCATTGGCCAGGTAATGCTCACTGTGGATCG
TTGTCGGACTATGCGTGGTCAGGTGCGTCAGATGTGAAGTTGGTGGCGGC
GGTTGCTGTTGTTCCGCCGCAGCAGCTTGGGCTGCTGCAGCTTGGGCAGC
TGCCATAGCCGCTGCTTGGGCGGCACTATGCGCCTCCGCCGAGATCCCGC
TTAAGTGCATCTGGAAGGGCAAGGGGAGTTCCGTGGGTGGCGGCGGCACA
GAGGGTGGTCCGCTCGACTGCTGTTGCTGCTGCTGATGATGTTGCTGCTG
CTGTTGCTGTTGTTGTTGCTGCTGCTGTTGAACCGCCGCCATGTGAGCCG
GATGCGTGGCCTGGGTGACCGTCTCATTGTTATTATTGTTTGCTATGGTG
GTTGGGGGCTGGGCGGCCACTATGACAATGTCGCAGTTACTGCTCATCGC
CGTAGCAGCGGCATGGGCATGGGGCAGGCTTTTGATATGCATCATGTC

BS01058.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5683-PA 927 Aef1-RA 1..927 945..19 4610 99.8 Minus
CG5683-PC 927 Aef1-RC 1..927 945..19 4610 99.8 Minus
CG5683-PB 927 Aef1-RB 1..927 945..19 4610 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Aef1-RD 2684 CG5683-RD 475..1403 946..18 4630 99.9 Minus
Aef1-RB 2579 CG5683-RB 370..1298 946..18 4630 99.9 Minus
Aef1-RC 2622 CG5683-RC 413..1341 946..18 4630 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21435219..21436013 946..152 3960 99.9 Minus
3L 28110227 3L 21436072..21436210 156..18 695 100 Minus
3L 28110227 3L 21435814..21435937 267..144 215 78.2 Minus
3L 28110227 3L 21435898..21436014 351..235 195 77.8 Minus
Blast to na_te.dros performed on 2015-02-10 19:36:01 has no hits.

BS01058.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:37 Download gff for BS01058.3prime
Subject Subject Range Query Range Percent Splice Strand
Aef1-PB 1..927 19..945 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:13 Download gff for BS01058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5683-PB 1..927 19..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:26:22 Download gff for BS01058.3prime
Subject Subject Range Query Range Percent Splice Strand
Aef1-RC 410..1341 18..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:30 Download gff for BS01058.3prime
Subject Subject Range Query Range Percent Splice Strand
Aef1-RC 410..1341 18..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:30 Download gff for BS01058.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21435216..21436009 156..948 99 -> Minus
3L 21436073..21436210 18..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:26:22 Download gff for BS01058.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21428316..21429109 156..948 99 -> Minus
arm_3L 21429173..21429310 18..155 100   Minus

BS01058.5prime Sequence

832 bp (806 high quality bases) assembled on 2005-11-30

> BS01058.5prime
GAAGTTATCAGTCGACATGATGCATATCAAAAGCCTGCCCCATGCCCATG
CCGCTGCTACGGCGATGAGCAGTAACTGCGACATTGTCATAGTGGCCGCC
CAGCCCCAAACCACCATAGCAAACAATAATAACAATGAGACGGTCACCCA
GGCCACGCATCCGGCTCACATGGCGGCGGTTCAACAGCAGCAGCAACAAC
AACAGCAACAGCAGCAGCAACATCATCAGCAGCAGCAACAGCAGTCGAGC
GGACCACCCTCTGTGCCGCCGCCACCCACGGAACTCCCCTTGCCCTTCCA
GATGCACTTAAGCGGGATCTCGGCGGAGGCGCATAGTGCCGCCCAAGCAG
CGGCTATGGCAGCTGCCCAAGCTGCAGCAGCCCAAGCTGCTGCGGCGGAA
CAACAGCAACCGCCGCCACCAACTTCACATCTGACGCACCTGACCACGCA
TAGTCCGACAACGATCCACAGTGAGCATTACCTGGCCAATGGACATAGCG
AGCATCCCGGAGAGGGCAACGCTGCCGTTGGCGTAGGGGGAGCTGTCCGC
GAGCCGGAGAAACCTTTCCACTGCACCGTCTGCGATCGTCGCTTTCGACA
GCTAAGCACACTGACCAACCATGTAAAGATCCATACTGGCGAGAAGCCCT
ACAAATGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCGACGCTGACG
AACCATCTGAAGATCCATACGGGCGAGAAGCCTTATAACTGCAACTTTTG
TCCCAAGCATTTTCGACAACTGAGCACGCTGGCCAACCATGTGAAGATCC
ACACGGGTGAAAAGCCTTTTGAGTGTGTCATC

BS01058.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5683-PA 927 Aef1-RA 1..816 17..832 4080 100 Plus
CG5683-PC 927 Aef1-RC 1..816 17..832 4080 100 Plus
CG5683-PB 927 Aef1-RB 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Aef1-RD 2684 CG5683-RD 475..1291 16..832 4085 100 Plus
Aef1-RB 2579 CG5683-RB 370..1186 16..832 4085 100 Plus
Aef1-RC 2622 CG5683-RC 413..1229 16..832 4085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21435219..21436013 16..810 3975 100 Plus
3L 28110227 3L 21435814..21435937 695..818 215 78.2 Plus
3L 28110227 3L 21435898..21436014 611..727 195 77.8 Plus
Blast to na_te.dros performed on 2015-02-12 05:47:19 has no hits.

BS01058.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:38 Download gff for BS01058.5prime
Subject Subject Range Query Range Percent Splice Strand
Aef1-PB 1..816 17..832 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:14 Download gff for BS01058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5683-PB 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:36:47 Download gff for BS01058.5prime
Subject Subject Range Query Range Percent Splice Strand
Aef1-RC 403..1229 2..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:46 Download gff for BS01058.5prime
Subject Subject Range Query Range Percent Splice Strand
Aef1-RC 403..1229 2..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:46 Download gff for BS01058.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21435209..21436009 2..806 99 -> Plus
3L 21436073..21436098 807..832 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:36:47 Download gff for BS01058.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21428309..21429109 2..806 99 -> Plus
arm_3L 21429173..21429198 807..832 100   Plus

BS01058.complete Sequence

961 bp (961 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634513

> BS01058.complete
GAAGTTATCAGTCGACATGATGCATATCAAAAGCCTGCCCCATGCCCATG
CCGCTGCTACGGCGATGAGCAGTAACTGCGACATTGTCATAGTGGCCGCC
CAGCCCCAAACCACCATAGCAAACAATAATAACAATGAGACGGTCACCCA
GGCCACGCATCCGGCTCACATGGCGGCGGTTCAACAGCAGCAGCAACAAC
AACAGCAACAGCAGCAGCAACATCATCAGCAGCAGCAACAGCAGTCGAGC
GGACCACCCTCTGTGCCGCCGCCACCCACGGAACTCCCCTTGCCCTTCCA
GATGCACTTAAGCGGGATCTCGGCGGAGGCGCATAGTGCCGCCCAAGCAG
CGGCTATGGCAGCTGCCCAAGCTGCAGCAGCCCAAGCTGCTGCGGCGGAA
CAACAGCAACCGCCGCCACCAACTTCACATCTGACGCACCTGACCACGCA
TAGTCCGACAACGATCCACAGTGAGCATTACCTGGCCAATGGACATAGCG
AGCATCCCGGAGAGGGCAACGCTGCCGTTGGCGTAGGGGGAGCTGTCCGC
GAGCCGGAGAAACCTTTCCACTGCACCGTCTGCGATCGTCGCTTTCGACA
GCTAAGCACACTGACCAACCATGTAAAGATCCATACTGGCGAGAAGCCCT
ACAAATGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCGACGCTGACG
AACCATCTGAAGATCCATACGGGCGAGAAGCCTTATAACTGCAACTTTTG
TCCCAAGCATTTTCGACAACTGAGCACGCTGGCCAACCATGTGAAGATCC
ACACGGGTGAAAAGCCTTTTGAGTGTGTCATCTGCAAGAAGCAGTTCCGA
CAGTCCAGCACGCTCAACAACCACATAAAAATACACGTCATGGACAAAGT
CTACGTTCCTGTTAAGATCAAAACAGAGGAGGATGAGGGGTGACGAAGCT
TTCTAGACCAT

BS01058.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Aef1-RD 1365 CG5683-PD 1..928 17..944 4640 100 Plus
Aef1-RB 927 CG5683-PB 1..927 17..943 4635 100 Plus
Aef1-RC 927 CG5683-PC 1..927 17..943 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Aef1-RD 2684 CG5683-RD 475..1403 16..944 4645 100 Plus
Aef1-RB 2579 CG5683-RB 370..1298 16..944 4645 100 Plus
Aef1-RC 2622 CG5683-RC 413..1341 16..944 4645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21435219..21436013 16..810 3975 100 Plus
3L 28110227 3L 21436072..21436210 806..944 695 100 Plus
3L 28110227 3L 21435814..21435937 695..818 215 78.2 Plus
3L 28110227 3L 21435898..21436014 611..727 195 77.8 Plus
Blast to na_te.dros performed on 2014-11-27 23:36:33 has no hits.

BS01058.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:23 Download gff for BS01058.complete
Subject Subject Range Query Range Percent Splice Strand
Aef1-RB 1..927 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:38 Download gff for BS01058.complete
Subject Subject Range Query Range Percent Splice Strand
Aef1-RB 349..1287 2..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:19 Download gff for BS01058.complete
Subject Subject Range Query Range Percent Splice Strand
Aef1-RC 414..1341 17..945 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:23 Download gff for BS01058.complete
Subject Subject Range Query Range Percent Splice Strand
Aef1-RB 349..1287 2..944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:28 Download gff for BS01058.complete
Subject Subject Range Query Range Percent Splice Strand
Aef1-RC 414..1341 17..945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:28 Download gff for BS01058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21435220..21436009 17..806 100 -> Plus
3L 21436073..21436210 807..945 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:19 Download gff for BS01058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21428320..21429109 17..806 100 -> Plus
arm_3L 21429173..21429310 807..945 99   Plus

BS01058.pep Sequence

Translation from 16 to 942

> BS01058.pep
MMHIKSLPHAHAAATAMSSNCDIVIVAAQPQTTIANNNNNETVTQATHPA
HMAAVQQQQQQQQQQQQQHHQQQQQQSSGPPSVPPPPTELPLPFQMHLSG
ISAEAHSAAQAAAMAAAQAAAAQAAAAEQQQPPPPTSHLTHLTTHSPTTI
HSEHYLANGHSEHPGEGNAAVGVGGAVREPEKPFHCTVCDRRFRQLSTLT
NHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNFCPKHFR
QLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVK
IKTEEDEG*

BS01058.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Aef1-PB 308 CG5683-PB 1..308 1..308 1653 100 Plus
Aef1-PC 308 CG5683-PC 1..308 1..308 1653 100 Plus
Aef1-PA 308 CG5683-PA 1..308 1..308 1653 100 Plus
Aef1-PD 454 CG5683-PD 1..308 1..308 1653 100 Plus
odd-PA 392 CG3851-PA 65..326 39..290 372 35.4 Plus