Clone Sequence Records
BS01062.3prime Sequence
906 bp (818 high quality bases) assembled on 2005-11-30
> BS01062.3prime
ATGGTCTAGAAAGCTTCGTCAAATATTGTCATAGTCTTCGTCTAATTCGA
AAACGGTTTCAGTGGGGGTCGCTGATGCCGCTGTGGCCTTTGGAATGATG
GGAGCGCTGCTCTTTCCAGCCATTTGGTTCACATTATTGTTGTCCCCCGG
CGTGGCCGCTGGTAATCCAATAGAGGCGGGGGGCACACCACTGCCAGGTG
CTCCACCGGCCACGATATTCGTCAGATCGATATTGATCACCGGAGCAGCT
ATGTCGAAGTTAAAAGCTCCAGATCCGGCGCCCGATCCTGACCCAGAATC
AGAGGCGTCCGGTGTGCACAGGTTCGCCGTCGGCATTTGCACGTGGCTGT
AGTCGATCTTGACAATGGGCTTGTTGAGTTCGTAGTTGCAGATCGGGGCG
GGTATGGCAGTATCGAGCTGCACCGACTGTTTCTTGAGGTGATTGGGCGG
TCTGCCCCGTGGCGTGTAGGCCGGCATGGACCCGGAGCGGGCCAGCTTGG
CGGGCAGGGTGGTGCTGGTGGTGGGAGTTTCCTGGGTGGAGTGCTGCGAC
TGAAACTGCCGCTTGGTGGCTGCGGCTCCTCCGCCCGATCCGGCTCCGTT
GTTCAGACTCATGGAGCGCATGTAGGCAGCTGTGCCGTTCGCCTGCGAGC
GCATTGACGTCGATGGCAGGCTAAGATCATATGGCGTGTCTGAATCTGGA
TACTGTTCCTCTGGCGAGCTGCGTAACACATCGTCCTCGTTGTAGGCGGC
CTCCTCGGCCACACTGATGTCGGGTATGTTGCGGACCAGCTCCTTGAGGA
AGTCAAAGCGTTTCTCGGATACGATACACTGCCTCATGTGCGATGGCGAT
AGCGTCTTGGCGTTGCGCGCATTCGTGATGCGCAGCGTCTTGGTCAGCAG
CGACTC
BS01062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10318-PA | 1026 | NC2alpha-RA | 139..1026 | 906..19 | 4440 | 100 | Minus |
| CG10318-PB | 966 | NC2alpha-RB | 79..966 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2alpha-RA | 1235 | CG10318-RA | 234..1121 | 906..19 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21670592..21671479 | 906..19 | 4440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:38:05 has no hits.
BS01062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:39 Download gff for
BS01062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10318-PB | 79..966 | 19..906 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:16 Download gff for
BS01062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10318-PB | 79..966 | 19..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:04:19 Download gff for
BS01062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RA | 234..1121 | 19..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:34 Download gff for
BS01062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RA | 234..1121 | 19..906 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:34 Download gff for
BS01062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21670592..21671479 | 19..906 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:04:19 Download gff for
BS01062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17558097..17558984 | 19..906 | 100 | | Minus |
BS01062.5prime Sequence
763 bp (762 high quality bases) assembled on 2005-11-30
> BS01062.5prime
GAAGTTATCAGTCGACATGCAAAGCGACGAGGAAATCGGGAAGGTGGCCC
AGGCGGTGCCTGTTATCATCTCACGCACGCTGGAGCTCTTCGTGGAGTCG
CTGCTGACCAAGACGCTGCGCATCACGAATGCGCGCAACGCCAAGACGCT
ATCGCCATCGCACATGAGGCAGTGTATCGTATCCGAGAAACGCTTTGACT
TCCTCAAGGAGCTGGTCCGCAACATACCCGACATCAGTGTGGCCGAGGAG
GCCGCCTACAACGAGGACGATGTGTTACGCAGCTCGCCAGAGGAACAGTA
TCCAGATTCAGACACGCCATATGATCTTAGCCTGCCATCGACGTCAATGC
GCTCGCAGGCGAACGGCACAGCTGCCTACATGCGCTCCATGAGTCTGAAC
AACGGAGCCGGATCGGGCGGAGGAGCCGCAGCCACCAAGCGGCAGTTTCA
GTCGCAGCACTCCACCCAGGAAACTCCCACCACCAGCACCACCCTGCCCG
CCAAGCTGGCCCGCTCCGGGTCCATGCCGGCCTACACGCCACGGGGCAGA
CCGCCCAATCACCTCAAGAAACAGTCGGTGCAGCTCGATACTGCCATACC
CGCCCCGATCTGCAACTACGAACTCAACAAGCCCATTGTCAAGATCGACT
ACAGCCACGTGCAAATGCCGACGGCGAACCTGTGCACACCGGACGCCTCT
GATTCTGGGTCAGGATCGGGCGCCGGATCTGGAGCTTTTAACTTCGACAT
AGCTGCTCCGGTG
BS01062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10318-PA | 1026 | NC2alpha-RA | 60..807 | 16..763 | 3740 | 100 | Plus |
| CG10318-PB | 966 | NC2alpha-RB | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2alpha-RA | 1235 | CG10318-RA | 155..902 | 16..763 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21670513..21671260 | 16..763 | 3740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:38:58 has no hits.
BS01062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:40 Download gff for
BS01062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10318-PA | 49..807 | 7..763 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:17 Download gff for
BS01062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10318-PA | 49..807 | 7..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:07 Download gff for
BS01062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RA | 144..902 | 7..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:39:50 Download gff for
BS01062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RA | 144..902 | 7..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:39:50 Download gff for
BS01062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21670502..21671260 | 7..763 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:07 Download gff for
BS01062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17558007..17558765 | 7..763 | 99 | | Plus |
BS01062.complete Sequence
1000 bp (1000 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634514
> BS01062.complete
GAAGTTATCAGTCGACATGCAAAGCGACGAGGAAATCGGGAAGGTGGCCC
AGGCGGTGCCTGTTATCATCTCACGCACGCTGGAGCTCTTCGTGGAGTCG
CTGCTGACCAAGACGCTGCGCATCACGAATGCGCGCAACGCCAAGACGCT
ATCGCCATCGCACATGAGGCAGTGTATCGTATCCGAGAAACGCTTTGACT
TCCTCAAGGAGCTGGTCCGCAACATACCCGACATCAGTGTGGCCGAGGAG
GCCGCCTACAACGAGGACGATGTGTTACGCAGCTCGCCAGAGGAACAGTA
TCCAGATTCAGACACGCCATATGATCTTAGCCTGCCATCGACGTCAATGC
GCTCGCAGGCGAACGGCACAGCTGCCTACATGCGCTCCATGAGTCTGAAC
AACGGAGCCGGATCGGGCGGAGGAGCCGCAGCCACCAAGCGGCAGTTTCA
GTCGCAGCACTCCACCCAGGAAACTCCCACCACCAGCACCACCCTGCCCG
CCAAGCTGGCCCGCTCCGGGTCCATGCCGGCCTACACGCCACGGGGCAGA
CCGCCCAATCACCTCAAGAAACAGTCGGTGCAGCTCGATACTGCCATACC
CGCCCCGATCTGCAACTACGAACTCAACAAGCCCATTGTCAAGATCGACT
ACAGCCACGTGCAAATGCCGACGGCGAACCTGTGCACACCGGACGCCTCT
GATTCTGGGTCAGGATCGGGCGCCGGATCTGGAGCTTTTAACTTCGACAT
AGCTGCTCCGGTGATCAATATCGATCTGACGAATATCGTGGCCGGTGGAG
CACCTGGCAGTGGTGTGCCCCCCGCCTCTATTGGATTACCAGCGGCCACG
CCGGGGGACAACAATAATGTGAACCAAATGGCTGGAAAGAGCAGCGCTCC
CATCATTCCAAAGGCCACAGCGGCATCAGCGACCCCCACTGAAACCGTTT
TCGAATTAGACGAAGACTATGACAATATTTGACGAAGCTTTCTAGACCAT
BS01062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2alpha-RA | 1026 | CG10318-PA | 60..1026 | 16..982 | 4835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2alpha-RA | 1235 | CG10318-RA | 155..1121 | 16..982 | 4835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21670513..21671479 | 16..982 | 4835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:38:59 has no hits.
BS01062.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:24 Download gff for
BS01062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RA | 49..1026 | 7..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:39 Download gff for
BS01062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RB | 301..1278 | 7..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:34 Download gff for
BS01062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RA | 156..1121 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:24 Download gff for
BS01062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RB | 301..1278 | 7..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:53 Download gff for
BS01062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RA | 156..1121 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:53 Download gff for
BS01062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21670514..21671479 | 17..984 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:34 Download gff for
BS01062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17558019..17558984 | 17..984 | 99 | | Plus |
BS01062.pep Sequence
Translation from 16 to 981
> BS01062.pep
MQSDEEIGKVAQAVPVIISRTLELFVESLLTKTLRITNARNAKTLSPSHM
RQCIVSEKRFDFLKELVRNIPDISVAEEAAYNEDDVLRSSPEEQYPDSDT
PYDLSLPSTSMRSQANGTAAYMRSMSLNNGAGSGGGAAATKRQFQSQHST
QETPTTSTTLPAKLARSGSMPAYTPRGRPPNHLKKQSVQLDTAIPAPICN
YELNKPIVKIDYSHVQMPTANLCTPDASDSGSGSGAGSGAFNFDIAAPVI
NIDLTNIVAGGAPGSGVPPASIGLPAATPGDNNNVNQMAGKSSAPIIPKA
TAASATPTETVFELDEDYDNI*
BS01062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2alpha-PA | 341 | CG10318-PA | 21..341 | 1..321 | 1638 | 100 | Plus |
