Clone BS01064 Report

Search the DGRC for BS01064

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptslp1-RA
Protein status:BS01064.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01064.3prime Sequence

888 bp (827 high quality bases) assembled on 2005-11-30

> BS01064.3prime
ATGGTCTAGAAAGCTTCGTTAGCTGGATGGAAACTTGCCAAAGAACTGCA
TGCGCTGAAACAACTCGGCGTTCAATTGTTGTGGATAGCCCTGCATCTGG
GCGGGATGGGGCGCCTGATGATGGTGGGCCTGAGGAGCCTGCTGGTACTG
CATCTGCTGATAGGCAGCCTGATAGGCAGCGGGATTCATGCGCTGGTACA
GGGCGGCGGCGGCAGCGGCGGCGAATGGAACAGCCGGGTATCCGTAGCTG
GAAGCTGGAGCTCCGTATGGTGAAGCAGCCATCATCGGCGAGAATATGGC
CTGACGATAGGCGGCCAGGCGAGTGCGACTGGCGCCGGGATTCTTGCGCC
TCAGCTTGCCGGTGGTCTCGCCAATGAATACCTCCTCGGCCGAGGGGTCC
AGGATCCAGTAGTTGCCCTTGCCGGGATCATCGTAGCTGCGGGGAATCTT
CGTGAAGCACTTGTTCAGGCTCAGATTGTGGCGAATGGAGTTCTGCCAGC
CCCGCTTGTTGGCCTTGAAGTAGGGGAATCTATTGATCAGATACTGATAG
ATGCCATTCAAAGTCAACCGCTGCTCGGGACTATCCTGGATGGCCATCAT
GATGAGGGCGTTGTAGCTGTATGGCGGTTTCTTGGTATCGCTGCCGGCGG
TCATTTTCTGTTTCTTGCTGGGATTGCCATCCTCGCTCTCCTGGTCCTCG
TCCAGCTGATCCTCCAGCTCATCGTCGAACTCCACGTCGAGCTTGTCATT
GTTTTGCGACGATAGACTCTCGGCGGCACTGCTCATGGGTGTGCTGGTCC
TGCTGGGGCTGTCGAAATCCTCCGAAGCCGAGAGTTCGCCCATCGAATTG
GAGTACGGATGAACGTACTGATGATGATGATGCACCGG

BS01064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG16738-PA 969 slp1-RA 148..969 840..19 4110 100 Minus
CG16738-PA 969 slp1-RA 100..143 888..845 220 100 Minus
CG1132-PA 1098 fd64A-RA 391..429 510..472 170 97.4 Minus
CG5069-PA 1527 croc-RA 327..384 511..454 165 91.3 Minus
CG2939-PA 1356 slp2-RA 736..799 432..369 145 89 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
slp1-RA 1425 CG16738-RA 209..1078 888..19 4305 99.8 Minus
slp2-RA 2346 CG2939-RA 905..1217 621..309 385 76.8 Minus
croc-RA 2347 CG5069-RA 563..725 560..398 245 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3825883..3826752 888..19 4290 99.5 Minus
2L 23513712 2L 3837744..3838016 621..349 375 75.8 Minus
3L 28110227 3L 21475755..21475917 398..560 245 76.7 Plus
3L 28110227 3L 4020394..4020483 532..443 240 84.4 Minus
Blast to na_te.dros performed on 2015-02-10 23:09:02 has no hits.

BS01064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:43 Download gff for BS01064.3prime
Subject Subject Range Query Range Percent Splice Strand
slp1-PA 100..969 19..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:22 Download gff for BS01064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16738-PA 100..969 19..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:34:31 Download gff for BS01064.3prime
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 209..1083 11..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:26:01 Download gff for BS01064.3prime
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 209..1083 11..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:26:01 Download gff for BS01064.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3825883..3826757 11..888 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:34:31 Download gff for BS01064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3825883..3826757 11..888 99   Minus

BS01064.5prime Sequence

821 bp (779 high quality bases) assembled on 2005-11-30

> BS01064.5prime
GAAGTTATCAGTCGACATGGTGAAAAGTGAAATGGAATTCAAGAGCAACT
TCTCCATCGATGCCATCTTGGCCAAGAAACCCATCAACACCGCAACTCAA
CCCATCAAAACCGAACCGGTGCATCATCATCATCAGTACGTTCATCCGTA
CTCCAATTCCGATGGCGAACTCTCGGCTTCGGAGGATTTCGACAGCCCCA
GCAGGACCAGCACACCCATGAGCAGTGCCGCCGAGAGTCTATCGTCGCAA
AACAATGACAAGCTCGACGTGGAGTTCGACGATGAGCTGGAGGATCAGCT
GGACGAGGACCAGGAGAGCGAGGATGGCAATCCCAGCAAGAAACAGAAAA
TGACCGCCGGCAGCGATACCAAGAAACCGCCATACAGCTACAACGCCCTC
ATCATGATGGCCATCCAGGATAGTCCCGAGCAGCGGTTGACTTTGAATGG
CATCTATCAGTATCTGATCAATAGATTCCCCTACTTCAAGGCCAACAAGC
GGGGCTGGCAGAACTCCATTCGCCACAATCTGAGCCTGAACAAGTGCTTC
ACGAAGATTCCCCGCAGCTACGATGATCCCGGCAAGGGCAACTACTGGAT
CCTGGACCCCTCGGCCGAGGAGGTATTCATTGGCGAGACCACCGGCAAGC
TGAGGCGCAAGAATCCCGGCGCCAGTCGCACTCGCCTGGCCGCCTATCGT
CAGGCCATATTCTCGCCGATGATGGCTGCTTCACCATACGGAGCTCCAGC
TTCCAGCTACGGATACCCGGCTGTTCCATTCGCCCGCGCTGCCGCCGCCG
CCCTGTACCAGCGCATGAATC

BS01064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG16738-PA 969 slp1-RA 1..805 17..821 3975 99.7 Plus
CG1132-PA 1098 fd64A-RA 391..429 494..532 170 97.4 Plus
CG5069-PA 1527 croc-RA 327..384 493..550 165 91.3 Plus
CG2939-PA 1356 slp2-RA 736..799 572..635 145 89 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
slp1-RA 1425 CG16738-RA 110..914 17..821 3995 99.8 Plus
slp2-RA 2346 CG2939-RA 905..1217 383..695 385 76.8 Plus
croc-RA 2347 CG5069-RA 563..725 444..606 245 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3825784..3826588 17..821 3995 99.8 Plus
2L 23513712 2L 3837744..3838016 383..655 375 75.8 Plus
3L 28110227 3L 21475755..21475917 606..444 245 76.7 Minus
3L 28110227 3L 4020394..4020483 472..561 240 84.4 Plus
Blast to na_te.dros performed on 2015-02-10 20:58:21 has no hits.

BS01064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:44 Download gff for BS01064.5prime
Subject Subject Range Query Range Percent Splice Strand
slp1-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:23 Download gff for BS01064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16738-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:53:43 Download gff for BS01064.5prime
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 101..914 7..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:51 Download gff for BS01064.5prime
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 101..914 7..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:51 Download gff for BS01064.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3825775..3826588 7..821 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:53:43 Download gff for BS01064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3825775..3826588 7..821 99   Plus

BS01064.complete Sequence

1003 bp (1003 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634515

> BS01064.complete
GAAGTTATCAGTCGACATGGTGAAAAGTGAAATGGAATTCAAGAGCAACT
TCTCCATCGATGCCATCTTGGCCAAGAAACCCATCAACACCGCAACTCAA
CCCATCAAAACCGAACCGGTGCATCATCATCATCAGTACGTTCATCCGTA
CTCCAATTCCGATGGCGAACTCTCGGCTTCGGAGGATTTCGACAGCCCCA
GCAGGACCAGCACACCCATGAGCAGTGCCGCCGAGAGTCTATCGTCGCAA
AACAATGACAAGCTCGACGTGGAGTTCGACGATGAGCTGGAGGATCAGCT
GGACGAGGACCAGGAGAGCGAGGATGGCAATCCCAGCAAGAAACAGAAAA
TGACCGCCGGCAGCGATACCAAGAAACCGCCATACAGCTACAACGCCCTC
ATCATGATGGCCATCCAGGATAGTCCCGAGCAGCGGTTGACTTTGAATGG
CATCTATCAGTATCTGATCAATAGATTCCCCTACTTCAAGGCCAACAAGC
GGGGCTGGCAGAACTCCATTCGCCACAATCTGAGCCTGAACAAGTGCTTC
ACGAAGATTCCCCGCAGCTACGATGATCCCGGCAAGGGCAACTACTGGAT
CCTGGACCCCTCGGCCGAGGAGGTATTCATTGGCGAGACCACCGGCAAGC
TGAGGCGCAAGAATCCCGGCGCCAGTCGCACTCGCCTGGCCGCCTATCGT
CAGGCCATATTCTCGCCGATGATGGCTGCTTCACCATACGGAGCTCCAGC
TTCCAGCTACGGATACCCGGCTGTTCCATTCGCCGCCGCTGCCGCCGCCG
CCCTGTACCAGCGCATGAATCCCGCTGCCTATCAGGCTGCCTATCAGCAG
ATGCAGTACCAGCAGGCTCCTCAGGCCCACCATCATCAGGCGCCCCATCC
CGCCCAGATGCAGGGCTATCCACAACAATTGAACGCCGAGTTGTTTCAGC
GCATGCAGTTCTTTGGCAAGTTTCCATCCAGCTAACGAAGCTTTCTAGAC
CAT

BS01064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
slp1-RA 969 CG16738-PA 1..969 17..985 4845 100 Plus
slp2-RA 1356 CG2939-PA 547..819 383..655 375 75.8 Plus
croc-RA 1527 CG5069-PA 278..440 444..606 245 76.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
slp1-RA 1425 CG16738-RA 110..1078 17..985 4845 100 Plus
slp2-RA 2346 CG2939-RA 905..1177 383..655 375 75.8 Plus
croc-RA 2347 CG5069-RA 563..725 444..606 245 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3825784..3826752 17..985 4845 100 Plus
2L 23513712 2L 3837744..3838016 383..655 375 75.8 Plus
3L 28110227 3L 21475755..21475917 606..444 245 76.7 Minus
3L 28110227 3L 4020394..4020483 472..561 240 84.4 Plus
Blast to na_te.dros performed on 2014-11-28 00:31:28 has no hits.

BS01064.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:25 Download gff for BS01064.complete
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 1..969 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:41 Download gff for BS01064.complete
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 96..1078 7..993 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:15 Download gff for BS01064.complete
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 110..1078 17..987 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:26 Download gff for BS01064.complete
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 96..1078 7..993 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:20 Download gff for BS01064.complete
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 110..1078 17..987 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:20 Download gff for BS01064.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3825784..3826752 17..987 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:15 Download gff for BS01064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3825784..3826752 17..987 99   Plus

BS01064.pep Sequence

Translation from 16 to 984

> BS01064.pep
MVKSEMEFKSNFSIDAILAKKPINTATQPIKTEPVHHHHQYVHPYSNSDG
ELSASEDFDSPSRTSTPMSSAAESLSSQNNDKLDVEFDDELEDQLDEDQE
SEDGNPSKKQKMTAGSDTKKPPYSYNALIMMAIQDSPEQRLTLNGIYQYL
INRFPYFKANKRGWQNSIRHNLSLNKCFTKIPRSYDDPGKGNYWILDPSA
EEVFIGETTGKLRRKNPGASRTRLAAYRQAIFSPMMAASPYGAPASSYGY
PAVPFAAAAAAALYQRMNPAAYQAAYQQMQYQQAPQAHHHQAPHPAQMQG
YPQQLNAELFQRMQFFGKFPSS*

BS01064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
slp1-PA 322 CG16738-PA 1..322 1..322 1702 100 Plus
slp2-PA 451 CG2939-PA 59..330 9..271 563 45 Plus
fd19B-PA 260 CG9571-PA 40..231 101..297 378 42.1 Plus
croc-PA 508 CG5069-PA 70..165 120..215 320 58.3 Plus
fd64A-PB 365 CG1132-PB 90..195 119..221 309 54.1 Plus