Clone BS01068 Report

Search the DGRC for BS01068

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG3909-RA
Protein status:BS01068.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01068.3prime Sequence

894 bp (788 high quality bases) assembled on 2005-11-30

> BS01068.3prime
ATGGTCTAGAAAGCTTCGTCAAACAATGGCATTGGGCGGACAGTAGTATA
TGTTCAGGGACTTGTCCTCAGAAGCAGAGGCCACCTTGTCGTTTCCGGGG
CTATATCGGACGCCCCACACCTGATCTGTGTGCTCGGCGAACGTGTGCAG
GCACTTGCGTTCCGAGGTGTCCCATATTTTCACGCTGTTATCACTGGAGG
AGCTGGCAAAGTGTTTGCCGTCCTCGGAGAATGCCACGCACAGCACCCAA
GATGCGTGCCCAGATAGGGTGCCCACAACGTCGGAGTGGGTTACATCATA
AAGCTTCATGTGACCATCATCTGAGGCAGTGAGCAGCAGCTGCGAGTTCG
GAGAAAAGCAAAGGCTACGCACTGGCATCGCGTGTCCTTCCAATGTTTGC
ACTACCTTGCCCGCGGCCACATCGAAAATGGTAATGATACCATCGATGGC
TCCACTGGCAATGTACTTGCCATCGGGACTGTAGGCAATGCTAAGCGTGT
ATTTCCCATTTTGGGCATCCAATGTCTGCTCTGCCTTTCCGGTTTCCACA
CTGTACATGGAGATTTTGCCGTCGTTCAGTCCGGATATCACATATTTGTT
GCAGGGTGAAAATTGCACCGTCCAGAGATCAACAGGCCCAAAGCTAAGTA
GGTGTTTCTTGTCGCCCGAACGGGCATCCCACAAACACATGGTGGAGTCC
AGAGAACTACTGGCAATGGTCTGTCCATCGGAACTGACGGCCACAGAAAC
AACTCCCAGGGCATGTCCTTTTAGTTTGTGGCGCAACTTTANGGTGTTGT
CCTCCCTGCAGTCCCACACCTTTTACAAGTCATCCAGTCCGCCGGTGACC
AAGAAATCCTTCGGGGCGGGCCTCCTTCTTATCGAAATCAAAGG

BS01068.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-PA 996 CG3909-RA 210..996 805..19 3916 99.8 Minus
CG3909-PA 996 CG3909-RA 150..205 865..810 230 96.4 Minus
CG3909-PA 996 CG3909-RA 122..152 894..864 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 1102 CG3909-RA 199..1073 894..19 4269 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10044304..10044577 292..19 1370 100 Minus
3R 32079331 3R 10043766..10044004 719..481 1195 100 Minus
3R 32079331 3R 10044058..10044249 484..293 945 99.5 Minus
3R 32079331 3R 10043521..10043694 894..720 724 95.4 Minus
Blast to na_te.dros performed on 2015-02-11 12:06:47 has no hits.

BS01068.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:51 Download gff for BS01068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-PA 122..996 19..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:31 Download gff for BS01068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-PA 122..996 19..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:40:30 Download gff for BS01068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 199..1073 19..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:31:44 Download gff for BS01068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 199..1073 19..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:31:44 Download gff for BS01068.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10043521..10043694 720..894 96 -> Minus
3R 10043766..10044004 481..719 100 -> Minus
3R 10044062..10044249 293..480 100 -> Minus
3R 10044304..10044577 19..292 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:40:30 Download gff for BS01068.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5869243..5869416 720..894 96 -> Minus
arm_3R 5869488..5869726 481..719 100 -> Minus
arm_3R 5869784..5869971 293..480 100 -> Minus
arm_3R 5870026..5870299 19..292 100   Minus

BS01068.5prime Sequence

889 bp (780 high quality bases) assembled on 2005-11-30

> BS01068.5prime
GAAGTTATCAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGC
ACGACAGTCAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCA
GATCCGGATGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGA
TAAGAAGGAGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATG
ACTTGGTAAAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGC
CACAAACTAAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTC
CGATGGACAGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGT
GGGATGCCCGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTT
GATCTCTGGACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGG
ACTGAACGACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAG
AGCAGACATTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTAC
AGTCCCGATGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTAC
CATTTTCGATGTGGCCGCGGGCAAGGTAGTGCAAACATTGGAAGGACACG
CGATGCCAGTGCGTAGCCTTTGCTTTTCTCCGAACTCGCAGCTGCTGCTC
ACTGCCTCAGATGATGGTCACATGAAGCTTTATGATGTAACCCACTCCGA
CGTTGTGGGCACCCTATCTGGGCACGCATCTTGGGTGCTGTGCGTGGCAT
TCTCCGAGGACNGCAAACACTTTGCCAGCTCCTCCAGTGATAACAGCGTG
AAAATATGGGACACCTCGGAACGCAAGTGCCTGCACACG

BS01068.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-PA 996 CG3909-RA 1..873 17..889 4346 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 1102 CG3909-RA 78..950 17..889 4354 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10043402..10043694 19..311 1465 100 Plus
3R 32079331 3R 10043766..10044004 312..550 1195 100 Plus
3R 32079331 3R 10044058..10044249 547..738 945 99.5 Plus
3R 32079331 3R 10044304..10044454 739..889 744 99.3 Plus
Blast to na_te.dros performed on 2015-02-13 07:59:48 has no hits.

BS01068.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:53 Download gff for BS01068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:33 Download gff for BS01068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:34:29 Download gff for BS01068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 78..950 17..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:15 Download gff for BS01068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 78..950 17..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:15 Download gff for BS01068.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10043397..10043694 13..311 98 -> Plus
3R 10043766..10044004 312..550 100 -> Plus
3R 10044062..10044249 551..738 100 -> Plus
3R 10044304..10044454 739..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:34:29 Download gff for BS01068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5869119..5869416 13..311 98 -> Plus
arm_3R 5869488..5869726 312..550 100 -> Plus
arm_3R 5869784..5869971 551..738 100 -> Plus
arm_3R 5870026..5870176 739..889 99   Plus

BS01068.complete Sequence

1030 bp (1030 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634516

> BS01068.complete
GAAGTTATCAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGC
ACGACAGTCAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCA
GATCCGGATGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGA
TAAGAAGGAGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATG
ACTTGGTAAAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGC
CACAAACTAAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTC
CGATGGACAGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGT
GGGATGCCCGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTT
GATCTCTGGACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGG
ACTGAACGACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAG
AGCAGACATTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTAC
AGTCCCGATGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTAC
CATTTTCGATGTGGCCGCGGGCAAGGTAGTGCAAACATTGGAAGGACACG
CGATGCCAGTGCGTAGCCTTTGCTTTTCTCCGAACTCGCAGCTGCTGCTC
ACTGCCTCAGATGATGGTCACATGAAGCTTTATGATGTAACCCACTCCGA
CGTTGTGGGCACCCTATCTGGGCACGCATCTTGGGTGCTGTGCGTGGCAT
TCTCCGAGGACGGCAAACACTTTGCCAGCTCCTCCAGTGATAACAGCGTG
AAAATATGGGACACCTCGGAACGCAAGTGCCTGCACACGTTCGCCGAGCA
CACAGATCAGGTGTGGGGCGTCCGATATAGCCCCGGAAACGACAAGGTGG
CCTCTGCTTCTGAGGACAAGTCCCTGAACATATACTACTGTCCGCCCAAT
GCCATTGTTTGACGAAGCTTTCTAGACCAT

BS01068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 996 CG3909-PA 1..996 17..1012 4980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 1102 CG3909-RA 78..1073 17..1012 4980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10043402..10043694 19..311 1465 100 Plus
3R 32079331 3R 10044304..10044577 739..1012 1370 100 Plus
3R 32079331 3R 10043766..10044004 312..550 1195 100 Plus
3R 32079331 3R 10044058..10044249 547..738 945 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 00:55:55 has no hits.

BS01068.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:27 Download gff for BS01068.complete
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 1..996 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:43 Download gff for BS01068.complete
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 90..1085 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:39 Download gff for BS01068.complete
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 85..1073 24..1014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:27 Download gff for BS01068.complete
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 90..1085 17..1012 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:17 Download gff for BS01068.complete
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 85..1073 24..1014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:17 Download gff for BS01068.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10044304..10044577 739..1014 99   Plus
3R 10043407..10043694 24..311 100 -> Plus
3R 10043766..10044004 312..550 100 -> Plus
3R 10044062..10044249 551..738 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:39 Download gff for BS01068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5869129..5869416 24..311 100 -> Plus
arm_3R 5869488..5869726 312..550 100 -> Plus
arm_3R 5869784..5869971 551..738 100 -> Plus
arm_3R 5870026..5870299 739..1014 99   Plus

BS01068.pep Sequence

Translation from 16 to 1011

> BS01068.pep
MFSVLHKEENAHDSQLWACTWGRDTAASDPDDAVVEPEENPFDFDKKEAR
PKDFLVTGGLDDLVKVWDLQEDNTLKLRHKLKGHALGVVSVAVSSDGQTI
ASSSLDSTMCLWDARSGDKKHLLSFGPVDLWTVQFSPCNKYVISGLNDGK
ISMYSVETGKAEQTLDAQNGKYTLSIAYSPDGKYIASGAIDGIITIFDVA
AGKVVQTLEGHAMPVRSLCFSPNSQLLLTASDDGHMKLYDVTHSDVVGTL
SGHASWVLCVAFSEDGKHFASSSSDNSVKIWDTSERKCLHTFAEHTDQVW
GVRYSPGNDKVASASEDKSLNIYYCPPNAIV*

BS01068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-PA 331 CG3909-PA 1..331 1..331 1755 100 Plus
wds-PB 361 CG17437-PB 85..357 53..323 334 29.2 Plus
wds-PA 361 CG17437-PA 85..357 53..323 334 29.2 Plus
wds-PB 361 CG17437-PB 64..321 77..331 317 29 Plus
wds-PA 361 CG17437-PA 64..321 77..331 317 29 Plus
Poc1-PA 391 CG10191-PA 70..345 51..322 274 28.4 Plus
Poc1-PB 403 CG10191-PB 70..345 51..322 274 28.4 Plus
wds-PB 361 CG17437-PB 28..268 87..323 258 29.2 Plus
wds-PA 361 CG17437-PA 28..268 87..323 258 29.2 Plus
Poc1-PA 391 CG10191-PA 33..297 55..323 248 25.7 Plus
Poc1-PA 391 CG10191-PA 24..171 176..323 206 29.1 Plus