Clone Sequence Records
BS01068.3prime Sequence
894 bp (788 high quality bases) assembled on 2005-11-30
> BS01068.3prime
ATGGTCTAGAAAGCTTCGTCAAACAATGGCATTGGGCGGACAGTAGTATA
TGTTCAGGGACTTGTCCTCAGAAGCAGAGGCCACCTTGTCGTTTCCGGGG
CTATATCGGACGCCCCACACCTGATCTGTGTGCTCGGCGAACGTGTGCAG
GCACTTGCGTTCCGAGGTGTCCCATATTTTCACGCTGTTATCACTGGAGG
AGCTGGCAAAGTGTTTGCCGTCCTCGGAGAATGCCACGCACAGCACCCAA
GATGCGTGCCCAGATAGGGTGCCCACAACGTCGGAGTGGGTTACATCATA
AAGCTTCATGTGACCATCATCTGAGGCAGTGAGCAGCAGCTGCGAGTTCG
GAGAAAAGCAAAGGCTACGCACTGGCATCGCGTGTCCTTCCAATGTTTGC
ACTACCTTGCCCGCGGCCACATCGAAAATGGTAATGATACCATCGATGGC
TCCACTGGCAATGTACTTGCCATCGGGACTGTAGGCAATGCTAAGCGTGT
ATTTCCCATTTTGGGCATCCAATGTCTGCTCTGCCTTTCCGGTTTCCACA
CTGTACATGGAGATTTTGCCGTCGTTCAGTCCGGATATCACATATTTGTT
GCAGGGTGAAAATTGCACCGTCCAGAGATCAACAGGCCCAAAGCTAAGTA
GGTGTTTCTTGTCGCCCGAACGGGCATCCCACAAACACATGGTGGAGTCC
AGAGAACTACTGGCAATGGTCTGTCCATCGGAACTGACGGCCACAGAAAC
AACTCCCAGGGCATGTCCTTTTAGTTTGTGGCGCAACTTTANGGTGTTGT
CCTCCCTGCAGTCCCACACCTTTTACAAGTCATCCAGTCCGCCGGTGACC
AAGAAATCCTTCGGGGCGGGCCTCCTTCTTATCGAAATCAAAGG
BS01068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-PA | 996 | CG3909-RA | 210..996 | 805..19 | 3916 | 99.8 | Minus |
CG3909-PA | 996 | CG3909-RA | 150..205 | 865..810 | 230 | 96.4 | Minus |
CG3909-PA | 996 | CG3909-RA | 122..152 | 894..864 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-RA | 1102 | CG3909-RA | 199..1073 | 894..19 | 4269 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10044304..10044577 | 292..19 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 10043766..10044004 | 719..481 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 10044058..10044249 | 484..293 | 945 | 99.5 | Minus |
3R | 32079331 | 3R | 10043521..10043694 | 894..720 | 724 | 95.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:06:47 has no hits.
BS01068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:51 Download gff for
BS01068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-PA | 122..996 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:31 Download gff for
BS01068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-PA | 122..996 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:40:30 Download gff for
BS01068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 199..1073 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:31:44 Download gff for
BS01068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 199..1073 | 19..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:31:44 Download gff for
BS01068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10043521..10043694 | 720..894 | 96 | -> | Minus |
3R | 10043766..10044004 | 481..719 | 100 | -> | Minus |
3R | 10044062..10044249 | 293..480 | 100 | -> | Minus |
3R | 10044304..10044577 | 19..292 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:40:30 Download gff for
BS01068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5869243..5869416 | 720..894 | 96 | -> | Minus |
arm_3R | 5869488..5869726 | 481..719 | 100 | -> | Minus |
arm_3R | 5869784..5869971 | 293..480 | 100 | -> | Minus |
arm_3R | 5870026..5870299 | 19..292 | 100 | | Minus |
BS01068.5prime Sequence
889 bp (780 high quality bases) assembled on 2005-11-30
> BS01068.5prime
GAAGTTATCAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGC
ACGACAGTCAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCA
GATCCGGATGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGA
TAAGAAGGAGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATG
ACTTGGTAAAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGC
CACAAACTAAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTC
CGATGGACAGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGT
GGGATGCCCGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTT
GATCTCTGGACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGG
ACTGAACGACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAG
AGCAGACATTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTAC
AGTCCCGATGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTAC
CATTTTCGATGTGGCCGCGGGCAAGGTAGTGCAAACATTGGAAGGACACG
CGATGCCAGTGCGTAGCCTTTGCTTTTCTCCGAACTCGCAGCTGCTGCTC
ACTGCCTCAGATGATGGTCACATGAAGCTTTATGATGTAACCCACTCCGA
CGTTGTGGGCACCCTATCTGGGCACGCATCTTGGGTGCTGTGCGTGGCAT
TCTCCGAGGACNGCAAACACTTTGCCAGCTCCTCCAGTGATAACAGCGTG
AAAATATGGGACACCTCGGAACGCAAGTGCCTGCACACG
BS01068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-PA | 996 | CG3909-RA | 1..873 | 17..889 | 4346 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-RA | 1102 | CG3909-RA | 78..950 | 17..889 | 4354 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10043402..10043694 | 19..311 | 1465 | 100 | Plus |
3R | 32079331 | 3R | 10043766..10044004 | 312..550 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 10044058..10044249 | 547..738 | 945 | 99.5 | Plus |
3R | 32079331 | 3R | 10044304..10044454 | 739..889 | 744 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:59:48 has no hits.
BS01068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:59:53 Download gff for
BS01068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:33 Download gff for
BS01068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:34:29 Download gff for
BS01068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 78..950 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:15 Download gff for
BS01068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 78..950 | 17..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:15 Download gff for
BS01068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10043397..10043694 | 13..311 | 98 | -> | Plus |
3R | 10043766..10044004 | 312..550 | 100 | -> | Plus |
3R | 10044062..10044249 | 551..738 | 100 | -> | Plus |
3R | 10044304..10044454 | 739..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:34:29 Download gff for
BS01068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5869119..5869416 | 13..311 | 98 | -> | Plus |
arm_3R | 5869488..5869726 | 312..550 | 100 | -> | Plus |
arm_3R | 5869784..5869971 | 551..738 | 100 | -> | Plus |
arm_3R | 5870026..5870176 | 739..889 | 99 | | Plus |
BS01068.complete Sequence
1030 bp (1030 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634516
> BS01068.complete
GAAGTTATCAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGC
ACGACAGTCAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCA
GATCCGGATGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGA
TAAGAAGGAGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATG
ACTTGGTAAAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGC
CACAAACTAAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTC
CGATGGACAGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGT
GGGATGCCCGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTT
GATCTCTGGACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGG
ACTGAACGACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAG
AGCAGACATTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTAC
AGTCCCGATGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTAC
CATTTTCGATGTGGCCGCGGGCAAGGTAGTGCAAACATTGGAAGGACACG
CGATGCCAGTGCGTAGCCTTTGCTTTTCTCCGAACTCGCAGCTGCTGCTC
ACTGCCTCAGATGATGGTCACATGAAGCTTTATGATGTAACCCACTCCGA
CGTTGTGGGCACCCTATCTGGGCACGCATCTTGGGTGCTGTGCGTGGCAT
TCTCCGAGGACGGCAAACACTTTGCCAGCTCCTCCAGTGATAACAGCGTG
AAAATATGGGACACCTCGGAACGCAAGTGCCTGCACACGTTCGCCGAGCA
CACAGATCAGGTGTGGGGCGTCCGATATAGCCCCGGAAACGACAAGGTGG
CCTCTGCTTCTGAGGACAAGTCCCTGAACATATACTACTGTCCGCCCAAT
GCCATTGTTTGACGAAGCTTTCTAGACCAT
BS01068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-RA | 996 | CG3909-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-RA | 1102 | CG3909-RA | 78..1073 | 17..1012 | 4980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10043402..10043694 | 19..311 | 1465 | 100 | Plus |
3R | 32079331 | 3R | 10044304..10044577 | 739..1012 | 1370 | 100 | Plus |
3R | 32079331 | 3R | 10043766..10044004 | 312..550 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 10044058..10044249 | 547..738 | 945 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:55:55 has no hits.
BS01068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:27 Download gff for
BS01068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 1..996 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:43 Download gff for
BS01068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 90..1085 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:39 Download gff for
BS01068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 85..1073 | 24..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:27 Download gff for
BS01068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 90..1085 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:17 Download gff for
BS01068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 85..1073 | 24..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:17 Download gff for
BS01068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10044304..10044577 | 739..1014 | 99 | | Plus |
3R | 10043407..10043694 | 24..311 | 100 | -> | Plus |
3R | 10043766..10044004 | 312..550 | 100 | -> | Plus |
3R | 10044062..10044249 | 551..738 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:39 Download gff for
BS01068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5869129..5869416 | 24..311 | 100 | -> | Plus |
arm_3R | 5869488..5869726 | 312..550 | 100 | -> | Plus |
arm_3R | 5869784..5869971 | 551..738 | 100 | -> | Plus |
arm_3R | 5870026..5870299 | 739..1014 | 99 | | Plus |
BS01068.pep Sequence
Translation from 16 to 1011
> BS01068.pep
MFSVLHKEENAHDSQLWACTWGRDTAASDPDDAVVEPEENPFDFDKKEAR
PKDFLVTGGLDDLVKVWDLQEDNTLKLRHKLKGHALGVVSVAVSSDGQTI
ASSSLDSTMCLWDARSGDKKHLLSFGPVDLWTVQFSPCNKYVISGLNDGK
ISMYSVETGKAEQTLDAQNGKYTLSIAYSPDGKYIASGAIDGIITIFDVA
AGKVVQTLEGHAMPVRSLCFSPNSQLLLTASDDGHMKLYDVTHSDVVGTL
SGHASWVLCVAFSEDGKHFASSSSDNSVKIWDTSERKCLHTFAEHTDQVW
GVRYSPGNDKVASASEDKSLNIYYCPPNAIV*
BS01068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-PA | 331 | CG3909-PA | 1..331 | 1..331 | 1755 | 100 | Plus |
wds-PB | 361 | CG17437-PB | 85..357 | 53..323 | 334 | 29.2 | Plus |
wds-PA | 361 | CG17437-PA | 85..357 | 53..323 | 334 | 29.2 | Plus |
wds-PB | 361 | CG17437-PB | 64..321 | 77..331 | 317 | 29 | Plus |
wds-PA | 361 | CG17437-PA | 64..321 | 77..331 | 317 | 29 | Plus |
Poc1-PA | 391 | CG10191-PA | 70..345 | 51..322 | 274 | 28.4 | Plus |
Poc1-PB | 403 | CG10191-PB | 70..345 | 51..322 | 274 | 28.4 | Plus |
wds-PB | 361 | CG17437-PB | 28..268 | 87..323 | 258 | 29.2 | Plus |
wds-PA | 361 | CG17437-PA | 28..268 | 87..323 | 258 | 29.2 | Plus |
Poc1-PA | 391 | CG10191-PA | 33..297 | 55..323 | 248 | 25.7 | Plus |
Poc1-PA | 391 | CG10191-PA | 24..171 | 176..323 | 206 | 29.1 | Plus |