Clone Sequence Records
BS01074.3prime Sequence
860 bp (789 high quality bases) assembled on 2005-11-30
> BS01074.3prime
ATGGTCTAGAAAGCTTCGCTATGGAATCGAGTCTTGAAATCGCGGCTCTG
GCAGAAAGTCCTCCTCCAACTCGATGCGCGTATCGCTGTGATATCCTAGC
AAAGATTCCGTGTCCTCTTCCATATGTCGAATCGGAAATGTTTTGCCATC
GCCAAAGCTCGAAAACACGGGCAGGAACCAGTATTGCCAGTCGTCACCAA
ATACTTCGCAGAAATTGGCATAACGCCCCAAGTTATAACCATTCTTATCG
GGGCCGCCAACGCGGAAGATCGGAGCCCTGAACGACTCCAATGTCGTGCG
ATTCACCAGCACAAGGTAGATGTGGTAGCCAAATAAACTCACCAAACTAA
TGGCAAACATAATGGCAATGAAGAACAGGAACAAGATGTGAAAACGACCC
ATTCCACTGGCATTTAGCTGTCCTGCACCTACCTTCCAGAACTCGACAAA
GTCGTGTAGCGAGGTAAAAGCCACATACAGGCAGTAGACAAGAGCATAGC
CCAGGAACAACACGAAGTACTTGTAGTTGTAAAAGTTAACGCAGTTGTTT
ACCCAGGGGCAGTGGTGATCCATCTTCAGTACGCAGCAACTGCACACACT
ACAGTGGTGAGCTCGGTCTGGCTTGATGATCTTGCACTTTTCGCAGAACC
GCACCGAACCATTCATTGTGCGATTCGTTACTGGCAAATCGCGCGCAAAG
TTGTTAAGAATGCGTTTCTGGGTGTCCGGGCTGTCGGCTCGGAAAAGTCG
CGACACTTCCTCATCCGGTATCCTCCATTGATCTGGTATTCGGCCTACGG
AGGTCATTATGGTGCGCCAGTACGACCACATGAACAGGGTGAGGAAAGAG
GTGGTAGAAC
BS01074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-PB | 1017 | CG1407-RB | 190..1017 | 846..19 | 4140 | 100 | Minus |
CG1407-PA | 1332 | CG1407-RA | 190..878 | 846..158 | 3445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-RD | 1857 | CG1407-RD | 541..1382 | 860..18 | 4190 | 99.9 | Minus |
CG1407-RB | 1857 | CG1407-RB | 541..1382 | 860..18 | 4190 | 99.9 | Minus |
CG1407-RA | 2238 | CG1407-RA | 541..1242 | 860..158 | 3490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10031579..10031827 | 423..671 | 1245 | 100 | Plus |
2R | 25286936 | 2R | 10028918..10029059 | 18..159 | 710 | 100 | Plus |
2R | 25286936 | 2R | 10031284..10031419 | 288..423 | 680 | 100 | Plus |
2R | 25286936 | 2R | 10031085..10031215 | 158..288 | 655 | 100 | Plus |
2R | 25286936 | 2R | 10032019..10032125 | 671..777 | 535 | 100 | Plus |
2R | 25286936 | 2R | 10032214..10032295 | 778..860 | 365 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:27:54 has no hits.
BS01074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:01 Download gff for
BS01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-PB | 177..1017 | 19..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:42 Download gff for
BS01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-PB | 177..1017 | 19..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:14:04 Download gff for
BS01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 541..1385 | 15..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:22 Download gff for
BS01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 541..1385 | 15..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:22 Download gff for
BS01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10032214..10032295 | 778..860 | 98 | | Plus |
2R | 10028915..10029057 | 15..157 | 99 | <- | Plus |
2R | 10031085..10031214 | 158..287 | 100 | <- | Plus |
2R | 10031284..10031419 | 288..423 | 100 | <- | Plus |
2R | 10031580..10031826 | 424..670 | 100 | <- | Plus |
2R | 10032019..10032125 | 671..777 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:14:04 Download gff for
BS01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5919524..5919630 | 671..777 | 100 | <- | Plus |
arm_2R | 5919719..5919800 | 778..860 | 98 | | Plus |
arm_2R | 5916420..5916562 | 15..157 | 99 | <- | Plus |
arm_2R | 5918590..5918719 | 158..287 | 100 | <- | Plus |
arm_2R | 5918789..5918924 | 288..423 | 100 | <- | Plus |
arm_2R | 5919085..5919331 | 424..670 | 100 | <- | Plus |
BS01074.5prime Sequence
809 bp (769 high quality bases) assembled on 2005-11-30
> BS01074.5prime
GAAGTTATCAGTCGACATGGGTAACGACGATCATCGACGGCGGAAGACAC
CCTGCGGATTTTGTATGGCAGTCTTCAAATGGATACCAGTGCTATTTATC
ACCGCGGTAATAGCTTGGTCCTATTACGCTTATGTGGTGGAGCTATGCAT
CCGCAACTCGGAGAACCGCATTGGTATGATCTTCATGCTTCTGTTCTACC
ACCTCTTCCTCACCCTGTTCATGTGGTCGTACTGGCGCACCATAATGACC
TCCGTAGGCCGAATACCAGATCAATGGAGGATACCGGATGAGGAAGTGTC
GCGACTTTTCCGAGCCGACAGCCCGGACACCCAGAAACGCATTCTTAACA
ACTTTGCGCGCGATTTGCCAGTAACGAATCGCACAATGAATGGTTCGGTG
CGGTTCTGCGAAAAGTGCAAGATCATCAAGCCAGACCGAGCTCACCACTG
TAGTGTGTGCAGTTGCTGCGTACTGAAGATGGATCACCACTGCCCCTGGG
TAAACAACTGCGTTAACTTTTACAACTACAAGTACTTCGTGTTGTTCCTG
GGCTATGCTCTTGTCTACTGCCTGTATGTGGCTTTTACCTCGCTACACGA
CTTTGTCGAGTTCTGGAAGGTAGGTGCAGGACAGCTAAATGCCAGTGGAA
TGGGTCGTTTTCACATCTTGTTCCTGTTCTTCATTGCCATTATGTTTGCC
ATTAGTTTGGTGAGTTTATTTGGCTACCACATCTACCTTGTGCTGGTGAA
TCGCACGACATTGGAGTCGTTCAGGGCTCCGATCTTCCCGCGTGGCGGCC
CCGATAAGA
BS01074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-PB | 1017 | CG1407-RB | 1..772 | 17..788 | 3860 | 100 | Plus |
CG1407-PA | 1332 | CG1407-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-RD | 1857 | CG1407-RD | 365..1157 | 17..809 | 3920 | 99.7 | Plus |
CG1407-RA | 2238 | CG1407-RA | 365..1157 | 17..809 | 3920 | 99.7 | Plus |
CG1407-RB | 1857 | CG1407-RB | 365..1157 | 17..809 | 3920 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10031579..10031827 | 629..381 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 10032393..10032529 | 153..17 | 685 | 100 | Minus |
2R | 25286936 | 2R | 10031284..10031419 | 764..629 | 680 | 100 | Minus |
2R | 25286936 | 2R | 10032214..10032335 | 274..153 | 610 | 100 | Minus |
2R | 25286936 | 2R | 10032019..10032125 | 381..275 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:29:17 has no hits.
BS01074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:03 Download gff for
BS01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-PB | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:43 Download gff for
BS01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:26:30 Download gff for
BS01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 356..1156 | 7..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:20 Download gff for
BS01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 356..1156 | 7..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:20 Download gff for
BS01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10032394..10032538 | 7..152 | 97 | | Minus |
2R | 10031171..10031214 | 765..808 | 95 | <- | Minus |
2R | 10031284..10031419 | 629..764 | 100 | <- | Minus |
2R | 10031580..10031826 | 382..628 | 100 | <- | Minus |
2R | 10032019..10032125 | 275..381 | 100 | <- | Minus |
2R | 10032214..10032335 | 153..274 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:26:30 Download gff for
BS01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5918676..5918719 | 765..808 | 95 | <- | Minus |
arm_2R | 5918789..5918924 | 629..764 | 100 | <- | Minus |
arm_2R | 5919085..5919331 | 382..628 | 100 | <- | Minus |
arm_2R | 5919524..5919630 | 275..381 | 100 | <- | Minus |
arm_2R | 5919719..5919840 | 153..274 | 100 | <- | Minus |
arm_2R | 5919899..5920043 | 7..152 | 97 | | Minus |
BS01074.complete Sequence
1051 bp (1051 high quality bases) assembled on 2005-06-23
> BS01074.complete
GAAGTTATCAGTCGACATGGGTAACGACGATCATCGACGGCGGAAGACAC
CCTGCGGATTTTGTATGGCAGTCTTCAAATGGATACCAGTGCTATTTATC
ACCGCGGTAATAGCTTGGTCCTATTACGCTTATGTGGTGGAGCTATGCAT
CCGCAACTCGGAGAACCGCATTGGTATGATCTTCATGCTTCTGTTCTACC
ACCTCTTCCTCACCCTGTTCATGTGGTCGTACTGGCGCACCATAATGACC
TCCGTAGGCCGAATACCAGATCAATGGAGGATACCGGATGAGGAAGTGTC
GCGACTTTTCCGAGCCGACAGCCCGGACACCCAGAAACGCATTCTTAACA
ACTTTGCGCGCGATTTGCCAGTAACGAATCGCACAATGAATGGTTCGGTG
CGGTTCTGCGAAAAGTGCAAGATCATCAAGCCAGACCGAGCTCACCACTG
TAGTGTGTGCAGTTGCTGCGTACTGAAGATGGATCACCACTGCCCCTGGG
TAAACAACTGCGTTAACTTTTACAACTACAAGTACTTCGTGTTGTTCCTG
GGCTATGCTCTTGTCTACTGCCTGTATGTGGCTTTTACCTCGCTACACGA
CTTTGTCGAGTTCTGGAAGGTAGGTGCAGGACAGCTAAATGCCAGTGGAA
TGGGTCGTTTTCACATCTTGTTCCTGTTCTTCATTGCCATTATGTTTGCC
ATTAGTTTGGTGAGTTTATTTGGCTACCACATCTACCTTGTGCTGGTGAA
TCGCACGACATTGGAGTCGTTCAGGGCTCCGATCTTCCGCGTTGGCGGCC
CCGATAAGAATGGTTATAACTTGGGGCGTTATGCCAATTTCTGCGAAGTA
TTTGGTGACGACTGGCAATACTGGTTCCTGCCCGTGTTTTCGAGCTTTGG
CGATGGCAAAACATTTCCGATTCGACATATGGAAGAGGACACGGAATCTT
TGCTAGGATATCACAGCGATACGCGCATCGAGTTGGAGGAGGACTTTCTG
CCAGAGCCGCGATTTCAAGACTCGATTCCATAGCGAAGCTTTCTAGACCA
T
BS01074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-RD | 1059 | CG1407-PD | 1..1018 | 17..1034 | 5090 | 100 | Plus |
CG1407-RB | 1017 | CG1407-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
CG1407-RA | 1332 | CG1407-PA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-RD | 1857 | CG1407-RD | 365..1382 | 17..1034 | 5090 | 100 | Plus |
CG1407-RB | 1857 | CG1407-RB | 365..1382 | 17..1034 | 5090 | 100 | Plus |
CG1407-RA | 2238 | CG1407-RA | 365..1242 | 17..894 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10031579..10031827 | 629..381 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 10028918..10029059 | 1034..893 | 710 | 100 | Minus |
2R | 25286936 | 2R | 10032393..10032529 | 153..17 | 685 | 100 | Minus |
2R | 25286936 | 2R | 10031284..10031419 | 764..629 | 680 | 100 | Minus |
2R | 25286936 | 2R | 10031085..10031215 | 894..764 | 655 | 100 | Minus |
2R | 25286936 | 2R | 10032214..10032335 | 274..153 | 610 | 100 | Minus |
2R | 25286936 | 2R | 10032019..10032125 | 381..275 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:54:01 has no hits.
BS01074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:21 Download gff for
BS01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 1..1017 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:21 Download gff for
BS01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 351..1380 | 7..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:17 Download gff for
BS01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 365..1382 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:21 Download gff for
BS01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 351..1380 | 7..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:32 Download gff for
BS01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 365..1382 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:32 Download gff for
BS01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10032394..10032529 | 17..152 | 100 | | Minus |
2R | 10028917..10029057 | 895..1035 | 99 | <- | Minus |
2R | 10031085..10031214 | 765..894 | 100 | <- | Minus |
2R | 10031284..10031419 | 629..764 | 100 | <- | Minus |
2R | 10031580..10031826 | 382..628 | 100 | <- | Minus |
2R | 10032019..10032125 | 275..381 | 100 | <- | Minus |
2R | 10032214..10032335 | 153..274 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:17 Download gff for
BS01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5919085..5919331 | 382..628 | 100 | <- | Minus |
arm_2R | 5919524..5919630 | 275..381 | 100 | <- | Minus |
arm_2R | 5919719..5919840 | 153..274 | 100 | <- | Minus |
arm_2R | 5919899..5920034 | 17..152 | 100 | | Minus |
arm_2R | 5916422..5916562 | 895..1035 | 99 | <- | Minus |
arm_2R | 5918590..5918719 | 765..894 | 100 | <- | Minus |
arm_2R | 5918789..5918924 | 629..764 | 100 | <- | Minus |
BS01074.pep Sequence
Translation from 16 to 1032
> BS01074.pep
MGNDDHRRRKTPCGFCMAVFKWIPVLFITAVIAWSYYAYVVELCIRNSEN
RIGMIFMLLFYHLFLTLFMWSYWRTIMTSVGRIPDQWRIPDEEVSRLFRA
DSPDTQKRILNNFARDLPVTNRTMNGSVRFCEKCKIIKPDRAHHCSVCSC
CVLKMDHHCPWVNNCVNFYNYKYFVLFLGYALVYCLYVAFTSLHDFVEFW
KVGAGQLNASGMGRFHILFLFFIAIMFAISLVSLFGYHIYLVLVNRTTLE
SFRAPIFRVGGPDKNGYNLGRYANFCEVFGDDWQYWFLPVFSSFGDGKTF
PIRHMEEDTESLLGYHSDTRIELEEDFLPEPRFQDSIP*
BS01074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-PB | 338 | CG1407-PB | 1..338 | 1..338 | 1869 | 100 | Plus |
CG1407-PD | 352 | CG1407-PD | 1..338 | 1..338 | 1869 | 100 | Plus |
CG1407-PA | 443 | CG1407-PA | 1..301 | 1..301 | 1650 | 98.7 | Plus |
CG1407-PG | 452 | CG1407-PG | 1..310 | 1..301 | 1630 | 95.8 | Plus |
CG1407-PE | 440 | CG1407-PE | 1..298 | 1..301 | 1622 | 97.7 | Plus |