Clone BS01074 Report

Search the DGRC for BS01074

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG1407-RB
Protein status:BS01074.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01074.3prime Sequence

860 bp (789 high quality bases) assembled on 2005-11-30

> BS01074.3prime
ATGGTCTAGAAAGCTTCGCTATGGAATCGAGTCTTGAAATCGCGGCTCTG
GCAGAAAGTCCTCCTCCAACTCGATGCGCGTATCGCTGTGATATCCTAGC
AAAGATTCCGTGTCCTCTTCCATATGTCGAATCGGAAATGTTTTGCCATC
GCCAAAGCTCGAAAACACGGGCAGGAACCAGTATTGCCAGTCGTCACCAA
ATACTTCGCAGAAATTGGCATAACGCCCCAAGTTATAACCATTCTTATCG
GGGCCGCCAACGCGGAAGATCGGAGCCCTGAACGACTCCAATGTCGTGCG
ATTCACCAGCACAAGGTAGATGTGGTAGCCAAATAAACTCACCAAACTAA
TGGCAAACATAATGGCAATGAAGAACAGGAACAAGATGTGAAAACGACCC
ATTCCACTGGCATTTAGCTGTCCTGCACCTACCTTCCAGAACTCGACAAA
GTCGTGTAGCGAGGTAAAAGCCACATACAGGCAGTAGACAAGAGCATAGC
CCAGGAACAACACGAAGTACTTGTAGTTGTAAAAGTTAACGCAGTTGTTT
ACCCAGGGGCAGTGGTGATCCATCTTCAGTACGCAGCAACTGCACACACT
ACAGTGGTGAGCTCGGTCTGGCTTGATGATCTTGCACTTTTCGCAGAACC
GCACCGAACCATTCATTGTGCGATTCGTTACTGGCAAATCGCGCGCAAAG
TTGTTAAGAATGCGTTTCTGGGTGTCCGGGCTGTCGGCTCGGAAAAGTCG
CGACACTTCCTCATCCGGTATCCTCCATTGATCTGGTATTCGGCCTACGG
AGGTCATTATGGTGCGCCAGTACGACCACATGAACAGGGTGAGGAAAGAG
GTGGTAGAAC

BS01074.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1407-PB 1017 CG1407-RB 190..1017 846..19 4140 100 Minus
CG1407-PA 1332 CG1407-RA 190..878 846..158 3445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1407-RD 1857 CG1407-RD 541..1382 860..18 4190 99.9 Minus
CG1407-RB 1857 CG1407-RB 541..1382 860..18 4190 99.9 Minus
CG1407-RA 2238 CG1407-RA 541..1242 860..158 3490 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10031579..10031827 423..671 1245 100 Plus
2R 25286936 2R 10028918..10029059 18..159 710 100 Plus
2R 25286936 2R 10031284..10031419 288..423 680 100 Plus
2R 25286936 2R 10031085..10031215 158..288 655 100 Plus
2R 25286936 2R 10032019..10032125 671..777 535 100 Plus
2R 25286936 2R 10032214..10032295 778..860 365 98.8 Plus
Blast to na_te.dros performed on 2015-02-11 11:27:54 has no hits.

BS01074.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:01 Download gff for BS01074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-PB 177..1017 19..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:42 Download gff for BS01074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-PB 177..1017 19..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:14:04 Download gff for BS01074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 541..1385 15..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:22 Download gff for BS01074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 541..1385 15..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:22 Download gff for BS01074.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10032214..10032295 778..860 98   Plus
2R 10028915..10029057 15..157 99 <- Plus
2R 10031085..10031214 158..287 100 <- Plus
2R 10031284..10031419 288..423 100 <- Plus
2R 10031580..10031826 424..670 100 <- Plus
2R 10032019..10032125 671..777 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:14:04 Download gff for BS01074.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5919524..5919630 671..777 100 <- Plus
arm_2R 5919719..5919800 778..860 98   Plus
arm_2R 5916420..5916562 15..157 99 <- Plus
arm_2R 5918590..5918719 158..287 100 <- Plus
arm_2R 5918789..5918924 288..423 100 <- Plus
arm_2R 5919085..5919331 424..670 100 <- Plus

BS01074.5prime Sequence

809 bp (769 high quality bases) assembled on 2005-11-30

> BS01074.5prime
GAAGTTATCAGTCGACATGGGTAACGACGATCATCGACGGCGGAAGACAC
CCTGCGGATTTTGTATGGCAGTCTTCAAATGGATACCAGTGCTATTTATC
ACCGCGGTAATAGCTTGGTCCTATTACGCTTATGTGGTGGAGCTATGCAT
CCGCAACTCGGAGAACCGCATTGGTATGATCTTCATGCTTCTGTTCTACC
ACCTCTTCCTCACCCTGTTCATGTGGTCGTACTGGCGCACCATAATGACC
TCCGTAGGCCGAATACCAGATCAATGGAGGATACCGGATGAGGAAGTGTC
GCGACTTTTCCGAGCCGACAGCCCGGACACCCAGAAACGCATTCTTAACA
ACTTTGCGCGCGATTTGCCAGTAACGAATCGCACAATGAATGGTTCGGTG
CGGTTCTGCGAAAAGTGCAAGATCATCAAGCCAGACCGAGCTCACCACTG
TAGTGTGTGCAGTTGCTGCGTACTGAAGATGGATCACCACTGCCCCTGGG
TAAACAACTGCGTTAACTTTTACAACTACAAGTACTTCGTGTTGTTCCTG
GGCTATGCTCTTGTCTACTGCCTGTATGTGGCTTTTACCTCGCTACACGA
CTTTGTCGAGTTCTGGAAGGTAGGTGCAGGACAGCTAAATGCCAGTGGAA
TGGGTCGTTTTCACATCTTGTTCCTGTTCTTCATTGCCATTATGTTTGCC
ATTAGTTTGGTGAGTTTATTTGGCTACCACATCTACCTTGTGCTGGTGAA
TCGCACGACATTGGAGTCGTTCAGGGCTCCGATCTTCCCGCGTGGCGGCC
CCGATAAGA

BS01074.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1407-PB 1017 CG1407-RB 1..772 17..788 3860 100 Plus
CG1407-PA 1332 CG1407-RA 1..772 17..788 3860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1407-RD 1857 CG1407-RD 365..1157 17..809 3920 99.7 Plus
CG1407-RA 2238 CG1407-RA 365..1157 17..809 3920 99.7 Plus
CG1407-RB 1857 CG1407-RB 365..1157 17..809 3920 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10031579..10031827 629..381 1245 100 Minus
2R 25286936 2R 10032393..10032529 153..17 685 100 Minus
2R 25286936 2R 10031284..10031419 764..629 680 100 Minus
2R 25286936 2R 10032214..10032335 274..153 610 100 Minus
2R 25286936 2R 10032019..10032125 381..275 535 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:29:17 has no hits.

BS01074.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:03 Download gff for BS01074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-PB 1..792 17..808 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:43 Download gff for BS01074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:26:30 Download gff for BS01074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 356..1156 7..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:20 Download gff for BS01074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 356..1156 7..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:20 Download gff for BS01074.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10032394..10032538 7..152 97   Minus
2R 10031171..10031214 765..808 95 <- Minus
2R 10031284..10031419 629..764 100 <- Minus
2R 10031580..10031826 382..628 100 <- Minus
2R 10032019..10032125 275..381 100 <- Minus
2R 10032214..10032335 153..274 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:26:30 Download gff for BS01074.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5918676..5918719 765..808 95 <- Minus
arm_2R 5918789..5918924 629..764 100 <- Minus
arm_2R 5919085..5919331 382..628 100 <- Minus
arm_2R 5919524..5919630 275..381 100 <- Minus
arm_2R 5919719..5919840 153..274 100 <- Minus
arm_2R 5919899..5920043 7..152 97   Minus

BS01074.complete Sequence

1051 bp (1051 high quality bases) assembled on 2005-06-23

> BS01074.complete
GAAGTTATCAGTCGACATGGGTAACGACGATCATCGACGGCGGAAGACAC
CCTGCGGATTTTGTATGGCAGTCTTCAAATGGATACCAGTGCTATTTATC
ACCGCGGTAATAGCTTGGTCCTATTACGCTTATGTGGTGGAGCTATGCAT
CCGCAACTCGGAGAACCGCATTGGTATGATCTTCATGCTTCTGTTCTACC
ACCTCTTCCTCACCCTGTTCATGTGGTCGTACTGGCGCACCATAATGACC
TCCGTAGGCCGAATACCAGATCAATGGAGGATACCGGATGAGGAAGTGTC
GCGACTTTTCCGAGCCGACAGCCCGGACACCCAGAAACGCATTCTTAACA
ACTTTGCGCGCGATTTGCCAGTAACGAATCGCACAATGAATGGTTCGGTG
CGGTTCTGCGAAAAGTGCAAGATCATCAAGCCAGACCGAGCTCACCACTG
TAGTGTGTGCAGTTGCTGCGTACTGAAGATGGATCACCACTGCCCCTGGG
TAAACAACTGCGTTAACTTTTACAACTACAAGTACTTCGTGTTGTTCCTG
GGCTATGCTCTTGTCTACTGCCTGTATGTGGCTTTTACCTCGCTACACGA
CTTTGTCGAGTTCTGGAAGGTAGGTGCAGGACAGCTAAATGCCAGTGGAA
TGGGTCGTTTTCACATCTTGTTCCTGTTCTTCATTGCCATTATGTTTGCC
ATTAGTTTGGTGAGTTTATTTGGCTACCACATCTACCTTGTGCTGGTGAA
TCGCACGACATTGGAGTCGTTCAGGGCTCCGATCTTCCGCGTTGGCGGCC
CCGATAAGAATGGTTATAACTTGGGGCGTTATGCCAATTTCTGCGAAGTA
TTTGGTGACGACTGGCAATACTGGTTCCTGCCCGTGTTTTCGAGCTTTGG
CGATGGCAAAACATTTCCGATTCGACATATGGAAGAGGACACGGAATCTT
TGCTAGGATATCACAGCGATACGCGCATCGAGTTGGAGGAGGACTTTCTG
CCAGAGCCGCGATTTCAAGACTCGATTCCATAGCGAAGCTTTCTAGACCA
T

BS01074.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1407-RD 1059 CG1407-PD 1..1018 17..1034 5090 100 Plus
CG1407-RB 1017 CG1407-PB 1..1017 17..1033 5085 100 Plus
CG1407-RA 1332 CG1407-PA 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1407-RD 1857 CG1407-RD 365..1382 17..1034 5090 100 Plus
CG1407-RB 1857 CG1407-RB 365..1382 17..1034 5090 100 Plus
CG1407-RA 2238 CG1407-RA 365..1242 17..894 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10031579..10031827 629..381 1245 100 Minus
2R 25286936 2R 10028918..10029059 1034..893 710 100 Minus
2R 25286936 2R 10032393..10032529 153..17 685 100 Minus
2R 25286936 2R 10031284..10031419 764..629 680 100 Minus
2R 25286936 2R 10031085..10031215 894..764 655 100 Minus
2R 25286936 2R 10032214..10032335 274..153 610 100 Minus
2R 25286936 2R 10032019..10032125 381..275 535 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:54:01 has no hits.

BS01074.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:21 Download gff for BS01074.complete
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 1..1017 17..1033 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:21 Download gff for BS01074.complete
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 351..1380 7..1037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:17 Download gff for BS01074.complete
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 365..1382 17..1035 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:21 Download gff for BS01074.complete
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 351..1380 7..1037 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:32 Download gff for BS01074.complete
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 365..1382 17..1035 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:32 Download gff for BS01074.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10032394..10032529 17..152 100   Minus
2R 10028917..10029057 895..1035 99 <- Minus
2R 10031085..10031214 765..894 100 <- Minus
2R 10031284..10031419 629..764 100 <- Minus
2R 10031580..10031826 382..628 100 <- Minus
2R 10032019..10032125 275..381 100 <- Minus
2R 10032214..10032335 153..274 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:17 Download gff for BS01074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5919085..5919331 382..628 100 <- Minus
arm_2R 5919524..5919630 275..381 100 <- Minus
arm_2R 5919719..5919840 153..274 100 <- Minus
arm_2R 5919899..5920034 17..152 100   Minus
arm_2R 5916422..5916562 895..1035 99 <- Minus
arm_2R 5918590..5918719 765..894 100 <- Minus
arm_2R 5918789..5918924 629..764 100 <- Minus

BS01074.pep Sequence

Translation from 16 to 1032

> BS01074.pep
MGNDDHRRRKTPCGFCMAVFKWIPVLFITAVIAWSYYAYVVELCIRNSEN
RIGMIFMLLFYHLFLTLFMWSYWRTIMTSVGRIPDQWRIPDEEVSRLFRA
DSPDTQKRILNNFARDLPVTNRTMNGSVRFCEKCKIIKPDRAHHCSVCSC
CVLKMDHHCPWVNNCVNFYNYKYFVLFLGYALVYCLYVAFTSLHDFVEFW
KVGAGQLNASGMGRFHILFLFFIAIMFAISLVSLFGYHIYLVLVNRTTLE
SFRAPIFRVGGPDKNGYNLGRYANFCEVFGDDWQYWFLPVFSSFGDGKTF
PIRHMEEDTESLLGYHSDTRIELEEDFLPEPRFQDSIP*

BS01074.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1407-PB 338 CG1407-PB 1..338 1..338 1869 100 Plus
CG1407-PD 352 CG1407-PD 1..338 1..338 1869 100 Plus
CG1407-PA 443 CG1407-PA 1..301 1..301 1650 98.7 Plus
CG1407-PG 452 CG1407-PG 1..310 1..301 1630 95.8 Plus
CG1407-PE 440 CG1407-PE 1..298 1..301 1622 97.7 Plus