Clone BS01076 Report

Search the DGRC for BS01076

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG4424-RA
Protein status:BS01076.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01076.3prime Sequence

891 bp (789 high quality bases) assembled on 2005-11-30

> BS01076.3prime
ATGGTCTAGAAAGCTTCGTTAAGCATTAGCTACAGTAATCCCCACTTTAA
AGGTACTTAGATAGGCAGTCAGTCGTGGATCATTTATATGCTGTTGCGTT
TGCAGATGCGCCACGAGATTGTGAATGCGAGCGAAGCTTTTGTTGCAGAG
TTGGCATATGTGGGGTTTTTCGCCCGTGTGCGTCTTGTAGTGCATTTTAA
GGACACTGGCATATGTGAACTTCTTTCCGCAGGTCTTGCAGGCATAAGGA
CGCTCATTTCGATGGGTTCTTTCATGCTTAACTAGGGAAGTGCGATCCGC
GAAGTTGCGTTGGCAATATTGGCAGGTATATGGTTTAGCTCCCGTGTGCT
GCCGGATGTGGCGCTTCAGCTGGTAGTTGACGTGGAAGCTCTTGTGGCAA
ATCTCGCACTCGTAAGGCCGCTCATCGTTATGCCTTCGCATGTGGGTGTC
CAGCGTGCTCTTCCTGGGATATCCATTGCCACAGATAGCGCACACATGCA
ATTTACCCTTGACGGCACCAGCAGGAGCAGGTGGAGGAGTAGATGCAGGC
GGAGGATAAGGAGCAGGAAGCATTTCCACCGTTAGAACTGTGGGCCTTTC
CTTTTCCGCCGGGCCATGTGGCGTTTCTTCAATGGGATCTTCCGTAGACC
AAACTCCCTCTTCAAGCACCTCATCCTCTGGTGGTTCAAGCTGCTCAGTC
TCTATCGGTGGCGGAGTTGAAGGTCGCGTTTGCTGCACCACCTCCTTGAC
TACCCCTTGCTCGACTGCATCCTTTATCACGTATTCCCGGAGAAAATCAT
TGGAGCGCTGGCATATCTGTCGAAAATTGTGGGGCAGAGTTAGAAATGCC
TTGCATCTGANGCAGATTCTGGTGGGCAGCACTTCCTCCTT

BS01076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-PA 1038 CG4424-RA 166..1038 891..19 4271 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-RA 1258 CG4424-RA 246..1118 891..19 4309 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20027246..20027734 403..891 2389 99.2 Plus
3R 32079331 3R 20026627..20026765 19..157 695 100 Plus
3R 32079331 3R 20027052..20027186 269..403 675 100 Plus
3R 32079331 3R 20026831..20026943 158..270 565 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:44:10 has no hits.

BS01076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:07 Download gff for BS01076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-PA 166..1038 19..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:48 Download gff for BS01076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-PA 166..1038 19..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:07:55 Download gff for BS01076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 232..1107 15..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:18:28 Download gff for BS01076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 246..1121 15..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:18:28 Download gff for BS01076.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20026624..20026765 15..157 98 <- Plus
3R 20026831..20026941 158..268 100 <- Plus
3R 20027052..20027186 269..403 100 <- Plus
3R 20027247..20027734 404..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:07:55 Download gff for BS01076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15852774..15852908 269..403 100 <- Plus
arm_3R 15852346..15852487 15..157 98 <- Plus
arm_3R 15852553..15852663 158..268 100 <- Plus
arm_3R 15852969..15853456 404..891 99   Plus

BS01076.5prime Sequence

881 bp (749 high quality bases) assembled on 2005-11-30

> BS01076.5prime
GAAGTTATCAGTCGACATGGAGATACGATTGAACATGATGACCCTGTGCA
GGACTTGCCTGCAGGATGGCGAAGCCCACATGGTGTCTATTTTCCAGACA
GCGGACGATAGGCTGCCCGGTGGCGTATCCCTCTGTGACAAAATCGAAAG
TTTGAGTGGAATTCAGATAAGGGCAACGGCAAAGGAGGAAGTGCTGCCCA
CCAGAATCTGCCTCAGATGCAAGGCATTTCTAACTCTGGCCCACAAATTT
CGACAGATATGCCAGCGCTCCAATGAATTTCTCCGGGAATACGTGATAAA
GGATGCAGTCGAGCAAGGGGTAGTCAAGGAGGTGGTGCAGCAAACGCGAC
CTTCAACTCCGCCACCGATAGAGACTGAGCAGCTTGAACCACCAGAGGAT
GAGGTGCTTGAAGAGGGAGTTTGGTCTACGGAAGATCCCATTGAAGAAAC
GCCACATGGCCCGGCGGAAAAGGAAAGGCCCACAGTTCTAACGGTGGAAA
TGCTTCCTGCTCCTTATCCTCCGCCTGCATCTACTCCTCCACCTGCTCCT
GCTGGTGCCGTCAAGGGTAAATTGCATGTGTGCGCTATCTGTGGCAATGG
ATATCCCAGGAAGAGCACGCTGGACACCCACATGCGAAGGCATAACGATG
AGCGGCCTTACGAGTGCGAGATTTGCCACAAGAGCTTCCACGTCAACTAC
CAGCTGAAGCGCCACATCCGGCAGCACACGGGAGCTAAACCATATACCTG
CCNATATTGCCNACGCAACTTCGCGGATCGCACTTCCCTAGTTAAGCATG
AAAGAACCCATCGAAATGAGCGTCCTTATGCCCTGCAGACCTGCGGGAAA
GAGTTCACATATGCCAGTGTCCTTAAAATGC

BS01076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-PA 1038 CG4424-RA 1..816 17..832 4042 99.7 Plus
CG4424-PA 1038 CG4424-RA 836..865 852..881 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-RA 1258 CG4424-RA 81..945 17..881 4213 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20027246..20027751 670..165 2530 100 Minus
3R 32079331 3R 20027811..20027960 166..17 750 100 Minus
3R 32079331 3R 20027052..20027186 804..670 653 98.5 Minus
3R 32079331 3R 20026865..20026943 881..803 290 91.1 Minus
Blast to na_te.dros performed on 2015-02-12 18:54:09 has no hits.

BS01076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:08 Download gff for BS01076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:49 Download gff for BS01076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:04 Download gff for BS01076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 63..931 12..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:44 Download gff for BS01076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 77..945 12..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:44 Download gff for BS01076.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20026865..20026941 805..881 94 <- Minus
3R 20027052..20027186 670..804 98 <- Minus
3R 20027247..20027749 167..669 100 <- Minus
3R 20027811..20027964 12..166 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:04 Download gff for BS01076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15852587..15852663 805..881 94 <- Minus
arm_3R 15852774..15852908 670..804 98 <- Minus
arm_3R 15852969..15853471 167..669 100 <- Minus
arm_3R 15853533..15853686 12..166 98   Minus

BS01076.complete Sequence

1072 bp (1072 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634517

> BS01076.complete
GAAGTTATCAGTCGACATGGAGATACGATTGAACATGATGACCCTGTGCA
GGACTTGCCTGCAGGATGGCGAAGCCCACATGGTGTCTATTTTCCAGACA
GCGGACGATAGGCTGCCCGGTGGCGTATCCCTCTGTGACAAAATCGAAAG
TTTGAGTGGAATTCAGATAAGGGCAACGGCAAAGGAGGAAGTGCTGCCCA
CCAGAATCTGCCTCAGATGCAAGGCATTTCTAACTCTGGCCCACAAATTT
CGACAGATATGCCAGCGCTCCAATGAATTTCTCCGGGAATACGTGATAAA
GGATGCAGTCGAGCAAGGGGTAGTCAAGGAGGTGGTGCAGCAAACGCGAC
CTTCAACTCCGCCACCGATAGAGACTGAGCAGCTTGAACCACCAGAGGAT
GAGGTGCTTGAAGAGGGAGTTTGGTCTACGGAAGATCCCATTGAAGAAAC
GCCACATGGCCCGGCGGAAAAGGAAAGGCCCACAGTTCTAACGGTGGAAA
TGCTTCCTGCTCCTTATCCTCCGCCTGCATCTACTCCTCCACCTGCTCCT
GCTGGTGCCGTCAAGGGTAAATTGCATGTGTGCGCTATCTGTGGCAATGG
ATATCCCAGGAAGAGCACGCTGGACACCCACATGCGAAGGCATAACGATG
AGCGGCCTTACGAGTGCGAGATTTGCCACAAGAGCTTCCACGTCAACTAC
CAGCTGAAGCGCCACATCCGGCAGCACACGGGAGCTAAACCATATACCTG
CCAATATTGCCAACGCAACTTCGCGGATCGCACTTCCCTAGTTAAGCATG
AAAGAACCCATCGAAATGAGCGTCCTTATGCCTGCAAGACCTGCGGAAAG
AAGTTCACATATGCCAGTGTCCTTAAAATGCACTACAAGACGCACACGGG
CGAAAAACCCCACATATGCCAACTCTGCAACAAAAGCTTCGCTCGCATTC
ACAATCTCGTGGCGCATCTGCAAACGCAACAGCATATAAATGATCCACGA
CTGACTGCCTATCTAAGTACCTTTAAAGTGGGGATTACTGTAGCTAATGC
TTAACGAAGCTTTCTAGACCAT

BS01076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-RA 1038 CG4424-PA 1..1038 17..1054 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-RA 1258 CG4424-RA 81..1118 17..1054 5190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20027246..20027751 670..165 2530 100 Minus
3R 32079331 3R 20027811..20027960 166..17 750 100 Minus
3R 32079331 3R 20026627..20026765 1054..916 695 100 Minus
3R 32079331 3R 20027052..20027186 804..670 675 100 Minus
3R 32079331 3R 20026831..20026943 915..803 565 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:01:03 has no hits.

BS01076.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:28 Download gff for BS01076.complete
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 1..1038 17..1054 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:44 Download gff for BS01076.complete
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 63..1107 12..1058 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:42:10 Download gff for BS01076.complete
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 67..1104 17..1056 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:28 Download gff for BS01076.complete
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 63..1107 12..1058 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:20 Download gff for BS01076.complete
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 81..1118 17..1056 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:20 Download gff for BS01076.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20026625..20026765 916..1056 98 <- Minus
3R 20026831..20026941 805..915 100 <- Minus
3R 20027052..20027186 670..804 100 <- Minus
3R 20027247..20027749 167..669 100 <- Minus
3R 20027811..20027960 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:42:10 Download gff for BS01076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15853533..15853682 17..166 100   Minus
arm_3R 15852347..15852487 916..1056 98 <- Minus
arm_3R 15852553..15852663 805..915 100 <- Minus
arm_3R 15852774..15852908 670..804 100 <- Minus
arm_3R 15852969..15853471 167..669 100 <- Minus

BS01076.pep Sequence

Translation from 16 to 1053

> BS01076.pep
MEIRLNMMTLCRTCLQDGEAHMVSIFQTADDRLPGGVSLCDKIESLSGIQ
IRATAKEEVLPTRICLRCKAFLTLAHKFRQICQRSNEFLREYVIKDAVEQ
GVVKEVVQQTRPSTPPPIETEQLEPPEDEVLEEGVWSTEDPIEETPHGPA
EKERPTVLTVEMLPAPYPPPASTPPPAPAGAVKGKLHVCAICGNGYPRKS
TLDTHMRRHNDERPYECEICHKSFHVNYQLKRHIRQHTGAKPYTCQYCQR
NFADRTSLVKHERTHRNERPYACKTCGKKFTYASVLKMHYKTHTGEKPHI
CQLCNKSFARIHNLVAHLQTQQHINDPRLTAYLSTFKVGITVANA*

BS01076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-PA 345 CG4424-PA 1..345 1..345 1871 100 Plus
CG14711-PA 377 CG14711-PA 6..362 10..323 538 35.7 Plus
CG4854-PA 319 CG4854-PA 12..317 11..326 460 32.7 Plus
trem-PA 439 CG4413-PA 195..405 107..320 426 40.2 Plus
CG14710-PB 415 CG14710-PB 263..400 188..325 414 49.3 Plus
CG14711-PA 377 CG14711-PA 280..373 185..269 166 34 Plus