Clone Sequence Records
BS01076.3prime Sequence
891 bp (789 high quality bases) assembled on 2005-11-30
> BS01076.3prime
ATGGTCTAGAAAGCTTCGTTAAGCATTAGCTACAGTAATCCCCACTTTAA
AGGTACTTAGATAGGCAGTCAGTCGTGGATCATTTATATGCTGTTGCGTT
TGCAGATGCGCCACGAGATTGTGAATGCGAGCGAAGCTTTTGTTGCAGAG
TTGGCATATGTGGGGTTTTTCGCCCGTGTGCGTCTTGTAGTGCATTTTAA
GGACACTGGCATATGTGAACTTCTTTCCGCAGGTCTTGCAGGCATAAGGA
CGCTCATTTCGATGGGTTCTTTCATGCTTAACTAGGGAAGTGCGATCCGC
GAAGTTGCGTTGGCAATATTGGCAGGTATATGGTTTAGCTCCCGTGTGCT
GCCGGATGTGGCGCTTCAGCTGGTAGTTGACGTGGAAGCTCTTGTGGCAA
ATCTCGCACTCGTAAGGCCGCTCATCGTTATGCCTTCGCATGTGGGTGTC
CAGCGTGCTCTTCCTGGGATATCCATTGCCACAGATAGCGCACACATGCA
ATTTACCCTTGACGGCACCAGCAGGAGCAGGTGGAGGAGTAGATGCAGGC
GGAGGATAAGGAGCAGGAAGCATTTCCACCGTTAGAACTGTGGGCCTTTC
CTTTTCCGCCGGGCCATGTGGCGTTTCTTCAATGGGATCTTCCGTAGACC
AAACTCCCTCTTCAAGCACCTCATCCTCTGGTGGTTCAAGCTGCTCAGTC
TCTATCGGTGGCGGAGTTGAAGGTCGCGTTTGCTGCACCACCTCCTTGAC
TACCCCTTGCTCGACTGCATCCTTTATCACGTATTCCCGGAGAAAATCAT
TGGAGCGCTGGCATATCTGTCGAAAATTGTGGGGCAGAGTTAGAAATGCC
TTGCATCTGANGCAGATTCTGGTGGGCAGCACTTCCTCCTT
BS01076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-PA | 1038 | CG4424-RA | 166..1038 | 891..19 | 4271 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-RA | 1258 | CG4424-RA | 246..1118 | 891..19 | 4309 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20027246..20027734 | 403..891 | 2389 | 99.2 | Plus |
3R | 32079331 | 3R | 20026627..20026765 | 19..157 | 695 | 100 | Plus |
3R | 32079331 | 3R | 20027052..20027186 | 269..403 | 675 | 100 | Plus |
3R | 32079331 | 3R | 20026831..20026943 | 158..270 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:44:10 has no hits.
BS01076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:07 Download gff for
BS01076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-PA | 166..1038 | 19..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:48 Download gff for
BS01076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-PA | 166..1038 | 19..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:07:55 Download gff for
BS01076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 232..1107 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:18:28 Download gff for
BS01076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 246..1121 | 15..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:18:28 Download gff for
BS01076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20026624..20026765 | 15..157 | 98 | <- | Plus |
3R | 20026831..20026941 | 158..268 | 100 | <- | Plus |
3R | 20027052..20027186 | 269..403 | 100 | <- | Plus |
3R | 20027247..20027734 | 404..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:07:55 Download gff for
BS01076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15852774..15852908 | 269..403 | 100 | <- | Plus |
arm_3R | 15852346..15852487 | 15..157 | 98 | <- | Plus |
arm_3R | 15852553..15852663 | 158..268 | 100 | <- | Plus |
arm_3R | 15852969..15853456 | 404..891 | 99 | | Plus |
BS01076.5prime Sequence
881 bp (749 high quality bases) assembled on 2005-11-30
> BS01076.5prime
GAAGTTATCAGTCGACATGGAGATACGATTGAACATGATGACCCTGTGCA
GGACTTGCCTGCAGGATGGCGAAGCCCACATGGTGTCTATTTTCCAGACA
GCGGACGATAGGCTGCCCGGTGGCGTATCCCTCTGTGACAAAATCGAAAG
TTTGAGTGGAATTCAGATAAGGGCAACGGCAAAGGAGGAAGTGCTGCCCA
CCAGAATCTGCCTCAGATGCAAGGCATTTCTAACTCTGGCCCACAAATTT
CGACAGATATGCCAGCGCTCCAATGAATTTCTCCGGGAATACGTGATAAA
GGATGCAGTCGAGCAAGGGGTAGTCAAGGAGGTGGTGCAGCAAACGCGAC
CTTCAACTCCGCCACCGATAGAGACTGAGCAGCTTGAACCACCAGAGGAT
GAGGTGCTTGAAGAGGGAGTTTGGTCTACGGAAGATCCCATTGAAGAAAC
GCCACATGGCCCGGCGGAAAAGGAAAGGCCCACAGTTCTAACGGTGGAAA
TGCTTCCTGCTCCTTATCCTCCGCCTGCATCTACTCCTCCACCTGCTCCT
GCTGGTGCCGTCAAGGGTAAATTGCATGTGTGCGCTATCTGTGGCAATGG
ATATCCCAGGAAGAGCACGCTGGACACCCACATGCGAAGGCATAACGATG
AGCGGCCTTACGAGTGCGAGATTTGCCACAAGAGCTTCCACGTCAACTAC
CAGCTGAAGCGCCACATCCGGCAGCACACGGGAGCTAAACCATATACCTG
CCNATATTGCCNACGCAACTTCGCGGATCGCACTTCCCTAGTTAAGCATG
AAAGAACCCATCGAAATGAGCGTCCTTATGCCCTGCAGACCTGCGGGAAA
GAGTTCACATATGCCAGTGTCCTTAAAATGC
BS01076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-PA | 1038 | CG4424-RA | 1..816 | 17..832 | 4042 | 99.7 | Plus |
CG4424-PA | 1038 | CG4424-RA | 836..865 | 852..881 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-RA | 1258 | CG4424-RA | 81..945 | 17..881 | 4213 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20027246..20027751 | 670..165 | 2530 | 100 | Minus |
3R | 32079331 | 3R | 20027811..20027960 | 166..17 | 750 | 100 | Minus |
3R | 32079331 | 3R | 20027052..20027186 | 804..670 | 653 | 98.5 | Minus |
3R | 32079331 | 3R | 20026865..20026943 | 881..803 | 290 | 91.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:54:09 has no hits.
BS01076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:08 Download gff for
BS01076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:49 Download gff for
BS01076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:04 Download gff for
BS01076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 63..931 | 12..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:44 Download gff for
BS01076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 77..945 | 12..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:44 Download gff for
BS01076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20026865..20026941 | 805..881 | 94 | <- | Minus |
3R | 20027052..20027186 | 670..804 | 98 | <- | Minus |
3R | 20027247..20027749 | 167..669 | 100 | <- | Minus |
3R | 20027811..20027964 | 12..166 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:04 Download gff for
BS01076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15852587..15852663 | 805..881 | 94 | <- | Minus |
arm_3R | 15852774..15852908 | 670..804 | 98 | <- | Minus |
arm_3R | 15852969..15853471 | 167..669 | 100 | <- | Minus |
arm_3R | 15853533..15853686 | 12..166 | 98 | | Minus |
BS01076.complete Sequence
1072 bp (1072 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634517
> BS01076.complete
GAAGTTATCAGTCGACATGGAGATACGATTGAACATGATGACCCTGTGCA
GGACTTGCCTGCAGGATGGCGAAGCCCACATGGTGTCTATTTTCCAGACA
GCGGACGATAGGCTGCCCGGTGGCGTATCCCTCTGTGACAAAATCGAAAG
TTTGAGTGGAATTCAGATAAGGGCAACGGCAAAGGAGGAAGTGCTGCCCA
CCAGAATCTGCCTCAGATGCAAGGCATTTCTAACTCTGGCCCACAAATTT
CGACAGATATGCCAGCGCTCCAATGAATTTCTCCGGGAATACGTGATAAA
GGATGCAGTCGAGCAAGGGGTAGTCAAGGAGGTGGTGCAGCAAACGCGAC
CTTCAACTCCGCCACCGATAGAGACTGAGCAGCTTGAACCACCAGAGGAT
GAGGTGCTTGAAGAGGGAGTTTGGTCTACGGAAGATCCCATTGAAGAAAC
GCCACATGGCCCGGCGGAAAAGGAAAGGCCCACAGTTCTAACGGTGGAAA
TGCTTCCTGCTCCTTATCCTCCGCCTGCATCTACTCCTCCACCTGCTCCT
GCTGGTGCCGTCAAGGGTAAATTGCATGTGTGCGCTATCTGTGGCAATGG
ATATCCCAGGAAGAGCACGCTGGACACCCACATGCGAAGGCATAACGATG
AGCGGCCTTACGAGTGCGAGATTTGCCACAAGAGCTTCCACGTCAACTAC
CAGCTGAAGCGCCACATCCGGCAGCACACGGGAGCTAAACCATATACCTG
CCAATATTGCCAACGCAACTTCGCGGATCGCACTTCCCTAGTTAAGCATG
AAAGAACCCATCGAAATGAGCGTCCTTATGCCTGCAAGACCTGCGGAAAG
AAGTTCACATATGCCAGTGTCCTTAAAATGCACTACAAGACGCACACGGG
CGAAAAACCCCACATATGCCAACTCTGCAACAAAAGCTTCGCTCGCATTC
ACAATCTCGTGGCGCATCTGCAAACGCAACAGCATATAAATGATCCACGA
CTGACTGCCTATCTAAGTACCTTTAAAGTGGGGATTACTGTAGCTAATGC
TTAACGAAGCTTTCTAGACCAT
BS01076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-RA | 1038 | CG4424-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-RA | 1258 | CG4424-RA | 81..1118 | 17..1054 | 5190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20027246..20027751 | 670..165 | 2530 | 100 | Minus |
3R | 32079331 | 3R | 20027811..20027960 | 166..17 | 750 | 100 | Minus |
3R | 32079331 | 3R | 20026627..20026765 | 1054..916 | 695 | 100 | Minus |
3R | 32079331 | 3R | 20027052..20027186 | 804..670 | 675 | 100 | Minus |
3R | 32079331 | 3R | 20026831..20026943 | 915..803 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:01:03 has no hits.
BS01076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:28 Download gff for
BS01076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 1..1038 | 17..1054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:44 Download gff for
BS01076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 63..1107 | 12..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:42:10 Download gff for
BS01076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 67..1104 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:28 Download gff for
BS01076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 63..1107 | 12..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:20 Download gff for
BS01076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 81..1118 | 17..1056 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:20 Download gff for
BS01076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20026625..20026765 | 916..1056 | 98 | <- | Minus |
3R | 20026831..20026941 | 805..915 | 100 | <- | Minus |
3R | 20027052..20027186 | 670..804 | 100 | <- | Minus |
3R | 20027247..20027749 | 167..669 | 100 | <- | Minus |
3R | 20027811..20027960 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:42:10 Download gff for
BS01076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15853533..15853682 | 17..166 | 100 | | Minus |
arm_3R | 15852347..15852487 | 916..1056 | 98 | <- | Minus |
arm_3R | 15852553..15852663 | 805..915 | 100 | <- | Minus |
arm_3R | 15852774..15852908 | 670..804 | 100 | <- | Minus |
arm_3R | 15852969..15853471 | 167..669 | 100 | <- | Minus |
BS01076.pep Sequence
Translation from 16 to 1053
> BS01076.pep
MEIRLNMMTLCRTCLQDGEAHMVSIFQTADDRLPGGVSLCDKIESLSGIQ
IRATAKEEVLPTRICLRCKAFLTLAHKFRQICQRSNEFLREYVIKDAVEQ
GVVKEVVQQTRPSTPPPIETEQLEPPEDEVLEEGVWSTEDPIEETPHGPA
EKERPTVLTVEMLPAPYPPPASTPPPAPAGAVKGKLHVCAICGNGYPRKS
TLDTHMRRHNDERPYECEICHKSFHVNYQLKRHIRQHTGAKPYTCQYCQR
NFADRTSLVKHERTHRNERPYACKTCGKKFTYASVLKMHYKTHTGEKPHI
CQLCNKSFARIHNLVAHLQTQQHINDPRLTAYLSTFKVGITVANA*
BS01076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-PA | 345 | CG4424-PA | 1..345 | 1..345 | 1871 | 100 | Plus |
CG14711-PA | 377 | CG14711-PA | 6..362 | 10..323 | 538 | 35.7 | Plus |
CG4854-PA | 319 | CG4854-PA | 12..317 | 11..326 | 460 | 32.7 | Plus |
trem-PA | 439 | CG4413-PA | 195..405 | 107..320 | 426 | 40.2 | Plus |
CG14710-PB | 415 | CG14710-PB | 263..400 | 188..325 | 414 | 49.3 | Plus |
CG14711-PA | 377 | CG14711-PA | 280..373 | 185..269 | 166 | 34 | Plus |