Clone Sequence Records
BS01078.3prime Sequence
911 bp (794 high quality bases) assembled on 2005-11-30
> BS01078.3prime
ATGGTCTAGAAAGCTTCGTCACTTGTGTATCTCGAGGATATGTCTAGCAA
GTGTTTTTCTCTGCTTATAGAAACTGGCACAGTGAGGACACTTAAATGTT
CTTTCAGCGTTGTGTACGAGCTTGTGCTCCTTGAGAGTGCTGCTCAGCCG
AAAAGTCTTGGGACAGTGGGAGCAGCGAAATGGACGATCTGGTAAGTGCA
GGCGGCTGTGCTGCTTGAGGTGCTGCTTCATAGCGAAGGCCTTGGGGCAG
TGGGAACACTTGAATGGTCGTTCACCAGTGTGAGAACGGAAATGGTTATC
AAGGTGAAACTTCCTCGTAAATGTTTTCGTGCACTTGGAGCACTTGAACG
GTCTCTCGCTGCCATGTGTGCGGATGTGACGCCGGAGATCGGATGATTTA
ATAAAGGTTTTTGAGCACTGTGAACACTTGAATGGTCGTTCGCCAGTGTG
AGTTCGCTCATGCGACTGCAGAGTGGACTGCTGCGCAAAGGTCTTGGCGC
AGTGGGAACACTCGTAGGGTTTCGCTGCATTGTGGGTCTTCATGTGCGCC
TTGAGAGTGACTCTAAGTCTAAAGTTCCGCTTGCAGTAGGGGCATGGGAA
GGATTGTCCGTCCATGTGTGTTCGCATGTGCCTCAGAAAAGTTCCCTTTC
GCTGGTATTTCTTGTGGCATTCTCGACATTCGAATGCTACCTTCTTGCTG
TCGCTTTTCCCATCGTCATCAGCAGCGGATGCAGAATCAATCCGCGCATC
TTCGTCTTCCGAAATCTCCCAGTCTTCTTCTTCGAGCAAGGCGCATAAAG
CATCCTCGATGCCTTCATCGCGAACTCGGCAGTAGAACTGGTGGCTTTCC
CTCACAGTTTGCCTTATCCCATACGCGCTCTTTACGTCCTCATAGCACTG
TGGGCATATCA
BS01078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15436-PA | 1041 | CG15436-RA | 210..1041 | 850..19 | 4160 | 100 | Minus |
| CG15436-PA | 1041 | CG15436-RA | 149..204 | 911..856 | 280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15436-RA | 1411 | CG15436-RA | 330..1223 | 911..18 | 4425 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4463994..4464887 | 911..18 | 4395 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:39:54 has no hits.
BS01078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:09 Download gff for
BS01078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-PA | 150..1041 | 19..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:51 Download gff for
BS01078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-PA | 150..1041 | 19..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:29 Download gff for
BS01078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-RA | 331..1227 | 12..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:15 Download gff for
BS01078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-RA | 331..1227 | 12..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:15 Download gff for
BS01078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4463995..4464891 | 12..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:29 Download gff for
BS01078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4463995..4464891 | 12..910 | 99 | | Minus |
BS01078.5prime Sequence
723 bp (661 high quality bases) assembled on 2005-11-30
> BS01078.5prime
GAAGTTATCAGTCGACATGGCGGAAATATGCCGAGTTTGTATGGATATTT
CTGGTAAACTCGTTAACATATTTGACGCCAGACGAAGAACCAGAGTTTCC
ATTGCCGAGATGATCGCGCAGTGCACCGGATTCGAGGTCAAACGTGGCGA
TTTGTTTTCGGAAATGATATGCCCACAGTGCTATGAGGACGTAAAGAGCG
CGTATGGGATAAGGCAAACTTGTGAGGAAAGCCACCAGTTCTACTGCCGA
GTTCGCGATGAAGGCATCGAGGATGCTTTATGCGCCTTGCTCGAAGAAGA
AGACTGGGAGATTTCGGAAGACGAAGATGCGCGGATTGATTCTGCATCCG
CTGCTGATGACGATGGGAAAAGCGACAGCAAGAAGGTAGCATTCGAATGT
CGAGAATGCCACAAGAAATACCAGCGAAAGGGAACTTTTCTGAGGCACAT
GCGAACACACATGGACGGACAATCCTTCCCATGCCCCTACTGCAAGCGGA
ACTTTAGACTTAGAGTCACTCTCAAGGCGCACATGAAGACCCACAATGCA
GCGAAACCCTACGAGTGTTCCCACTGCGCCAAGACCTTTGCGCAGCAGTC
CACTCTGCAGTCGCATGAGCGAACTCACACTGGCGAACGACCATTCAAGT
GTTCACAGTGCTCAAAAACCTTTATTAAATCATCCGATCTCCGGCGTCAC
ATCCGCACACATGGCAGCGAGAG
BS01078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15436-PA | 1041 | CG15436-RA | 1..707 | 17..723 | 3535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15436-RA | 1411 | CG15436-RA | 182..888 | 17..723 | 3535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4463846..4464552 | 17..723 | 3535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:14:42 has no hits.
BS01078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:10 Download gff for
BS01078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-PA | 1..707 | 17..723 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:06:52 Download gff for
BS01078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-PA | 1..707 | 17..723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:34:50 Download gff for
BS01078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-RA | 172..888 | 7..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:39 Download gff for
BS01078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-RA | 172..888 | 7..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:39 Download gff for
BS01078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4463841..4464552 | 11..723 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:34:50 Download gff for
BS01078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4463841..4464552 | 11..723 | 99 | | Plus |
BS01078.complete Sequence
1075 bp (1075 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634518
> BS01078.complete
GAAGTTATCAGTCGACATGGCGGAAATATGCCGAGTTTGTATGGATATTT
CTGGTAAACTCGTTAACATATTTGACGCCAGACGAAGAACCAGAGTTTCC
ATTGCCGAGATGATCGCGCAGTGCACCGGATTCGAGGTCAAACGTGGCGA
TTTGTTTTCGGAAATGATATGCCCACAGTGCTATGAGGACGTAAAGAGCG
CGTATGGGATAAGGCAAACTTGTGAGGAAAGCCACCAGTTCTACTGCCGA
GTTCGCGATGAAGGCATCGAGGATGCTTTATGCGCCTTGCTCGAAGAAGA
AGACTGGGAGATTTCGGAAGACGAAGATGCGCGGATTGATTCTGCATCCG
CTGCTGATGACGATGGGAAAAGCGACAGCAAGAAGGTAGCATTCGAATGT
CGAGAATGCCACAAGAAATACCAGCGAAAGGGAACTTTTCTGAGGCACAT
GCGAACACACATGGACGGACAATCCTTCCCATGCCCCTACTGCAAGCGGA
ACTTTAGACTTAGAGTCACTCTCAAGGCGCACATGAAGACCCACAATGCA
GCGAAACCCTACGAGTGTTCCCACTGCGCCAAGACCTTTGCGCAGCAGTC
CACTCTGCAGTCGCATGAGCGAACTCACACTGGCGAACGACCATTCAAGT
GTTCACAGTGCTCAAAAACCTTTATTAAATCATCCGATCTCCGGCGTCAC
ATCCGCACACATGGCAGCGAGAGACCGTTCAAGTGCTCCAAGTGCACGAA
AACATTTACGAGGAAGTTTCACCTTGATAACCATTTCCGTTCTCACACTG
GTGAACGACCATTCAAGTGTTCCCACTGCCCCAAGGCCTTCGCTATGAAG
CAGCACCTCAAGCAGCACAGCCGCCTGCACTTACCAGATCGTCCATTTCG
CTGCTCCCACTGTCCCAAGACTTTTCGGCTGAGCAGCACTCTCAAGGAGC
ACAAGCTCGTACACAACGCTGAAAGAACATTTAAGTGTCCTCACTGTGCC
AGTTTCTATAAGCAGAGAAAAACACTTGCTAGACATATCCTCGAGATACA
CAAGTGACGAAGCTTTCTAGACCAT
BS01078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15436-RA | 1041 | CG15436-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15436-RA | 1411 | CG15436-RA | 182..1223 | 17..1058 | 5210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4463846..4464887 | 17..1058 | 5210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:54:12 has no hits.
BS01078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:14 Download gff for
BS01078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-RA | 1..1041 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:36 Download gff for
BS01078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-RA | 151..1192 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:40 Download gff for
BS01078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-RA | 182..1223 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:15 Download gff for
BS01078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-RA | 141..1196 | 7..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:28 Download gff for
BS01078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15436-RA | 182..1223 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:28 Download gff for
BS01078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4463846..4464887 | 17..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:40 Download gff for
BS01078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4463846..4464887 | 17..1059 | 99 | | Plus |
BS01078.pep Sequence
Translation from 16 to 1056
> BS01078.pep
MAEICRVCMDISGKLVNIFDARRRTRVSIAEMIAQCTGFEVKRGDLFSEM
ICPQCYEDVKSAYGIRQTCEESHQFYCRVRDEGIEDALCALLEEEDWEIS
EDEDARIDSASAADDDGKSDSKKVAFECRECHKKYQRKGTFLRHMRTHMD
GQSFPCPYCKRNFRLRVTLKAHMKTHNAAKPYECSHCAKTFAQQSTLQSH
ERTHTGERPFKCSQCSKTFIKSSDLRRHIRTHGSERPFKCSKCTKTFTRK
FHLDNHFRSHTGERPFKCSHCPKAFAMKQHLKQHSRLHLPDRPFRCSHCP
KTFRLSSTLKEHKLVHNAERTFKCPHCASFYKQRKTLARHILEIHK*
BS01078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15436-PA | 346 | CG15436-PA | 1..346 | 1..346 | 1906 | 100 | Plus |
| Neu2-PA | 382 | CG7204-PA | 1..320 | 15..341 | 527 | 34 | Plus |
| CG5245-PA | 501 | CG5245-PA | 185..435 | 118..341 | 523 | 38.1 | Plus |
| CG44002-PA | 345 | CG44002-PA | 1..338 | 1..292 | 517 | 33.4 | Plus |
| Neu2-PB | 308 | CG7204-PB | 1..276 | 15..312 | 514 | 36.1 | Plus |
| Neu2-PA | 382 | CG7204-PA | 231..376 | 126..263 | 229 | 31.4 | Plus |
