Clone BS01082 Report

Search the DGRC for BS01082

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptTbp-RA
Protein status:BS01082.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01082.3prime Sequence

938 bp (802 high quality bases) assembled on 2005-11-30

> BS01082.3prime
ATGGTCTAGAAAGCTTCGTTATGACTGCTTCTTGAACTTCTTTAAAATGG
GGAATATCTTGTCGAAGGCATCGTAGATCTCCTGCCGCACCTTTGCTCCA
GTGAGCACCACCTTTCCGGACACGAAGATGAGGAGCACGATTCGAGGTCG
CACCATACGATAGATTAAGCCGGGAAATAGCTCAGGCTCGTAGCTGCTGA
AGTTGCAATGGGTCAGCACCAGGCCTTCCAAGCGTATGGGGAACTTGACA
TCGCAGGAGCCGACCATGTTTTGAATCTTAAAGTCGAGGAACTTTGCAGG
GAAACCGAGCTTTTGGATGATGCGCGCATACTTTCTCGCTGCCAGTCTGG
AGTCGTCCTCACTCTTTGCCCCTGTGCACACCATCTTGCCGGAGCTGAAA
ATAAGGGCGGTGGTCCGGGGCTCTCGGATTCGCATAATCACAGCCGCAAA
TCGCTTAGGATTGTACTCGGCGTTTCTCGCATGCAATGCTATTTTCTTGA
GGTCCAGTTTGCAGCACAGATTAACCGTGGACACGATGTTCTGAAGTTGT
GGCACAATACCGGGATCAGCGGAACCTGGTGTGGCTGGTGTCATCGGCGT
GGAGGGGCCCATCGTCTGGTGGATGTTGCTCAGGGCATCTCCGCCACCTC
CGGCCCCCGAACCGCCCACACTCCGCTCACTCATGGGCATCATGTGGGCC
ATCATGCTCTGCGGCGTCTGCGGCTGCATCATGGACTGCGGAGTGCTCCC
ACCGCCGCCGGGCGCCTGACTCTGGAGCTGCTGTTGCTGCTGCTGCTGCT
GATAGGAGGCCGATGGCTGGTAACTCTGCATTTGTTTGTGCGCCAGCGGG
AGCGATGGTTCGTGGCCNAAGAGACCTGATCCCCCACTGGCGTCCGACTG
CTGTTGCTGCTGCTGGTGCTGCACGGAACTGGAACCGG

BS01082.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9874-PA 1062 Tbp-RA 143..1062 938..19 4581 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Tbp-RA 1387 CG9874-RA 333..1252 938..19 4589 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21686669..21687310 297..938 3199 99.8 Plus
2R 25286936 2R 21686327..21686605 19..297 1395 100 Plus
Blast to na_te.dros performed 2015-02-11 12:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6870 922..773 135 57.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6932 921..768 131 59 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6898 922..772 128 58.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2483 922..772 127 58.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2494..2536 803..761 116 74.4 Minus
roo 9092 roo DM_ROO 9092bp 1084..1113 922..893 114 86.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6825 922..899 111 95.8 Minus

BS01082.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:17 Download gff for BS01082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9874-PA 143..1062 19..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:01 Download gff for BS01082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9874-PA 143..1062 19..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:40:55 Download gff for BS01082.3prime
Subject Subject Range Query Range Percent Splice Strand
Tbp-RA 333..1252 19..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:43:07 Download gff for BS01082.3prime
Subject Subject Range Query Range Percent Splice Strand
Tbp-RA 333..1252 19..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:43:07 Download gff for BS01082.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21686327..21686605 19..297 100 <- Plus
2R 21686670..21687310 298..938 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:40:55 Download gff for BS01082.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17573832..17574110 19..297 100 <- Plus
arm_2R 17574175..17574815 298..938 99   Plus

BS01082.5prime Sequence

847 bp (792 high quality bases) assembled on 2005-11-30

> BS01082.5prime
GAAGTTATCAGTCGACATGGACCAAATGCTAAGCCCCAACTTCTCGATTC
CGAGCATCGGAACGCCGCTCCACCAGATGGAAGCGGACCAGCAGATAGTG
GCCAATCCTGTGTACCATCCTCCGGCTGTATCGCAGCCGGATTCGTTGAT
GCCGGCACCCGGTTCCAGTTCCGTGCAGCACCAGCAGCAGCAACAGCAGT
CGGACGCCAGTGGGGGATCAGGTCTCTTTGGCCACGAACCATCGCTCCCG
CTGGCGCACAAACAAATGCAGAGTTACCAGCCATCGGCCTCCTATCAGCA
GCAGCAGCAGCAACAGCAGCTCCAGAGTCAGGCGCCCGGCGGCGGTGGGA
GCACTCCGCAGTCCATGATGCAGCCGCAGACGCCGCAGAGCATGATGGCC
CACATGATGCCCATGAGTGAGCGGAGTGTGGGCGGTTCGGGGGCCGGAGG
TGGCGGAGATGCCCTGAGCAACATCCACCAGACGATGGGCCCCTCCACGC
CGATGACACCAGCCACACCAGGTTCCGCTGATCCCGGTATTGTGCCACAA
CTTCAGAACATCGTGTCCACGGTTAATCTGTGCTGCAAACTGGACCTCAA
GAAAATAGCATTGCATGCGAGAAACGCCGAGTACAATCCTAAGCGATTTG
CGGCTGTGATTATGCGAATCCGAGAGCCCCGGACCACCGCCCTTATTTTC
AGCTCCGGCAAGATGGTGTGCACAGGGGCAAAGAGTGAGGACGACTCCAG
ACTGGCAGCGAGAAAGTATGCGCGCATCATCCAAAAGCTCGGTTTCCCCT
GCAAAGTCCTCGACTTTANGATTCAAAACATGGTCGGCTCCTGCGAT

BS01082.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9874-PA 1062 Tbp-RA 1..782 17..798 3910 100 Plus
CG9874-PA 1062 Tbp-RA 791..831 807..847 186 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tbp-RA 1387 CG9874-RA 191..1021 17..847 4099 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21686671..21687452 798..17 3910 100 Minus
2R 25286936 2R 21686558..21686598 847..807 194 97.6 Minus
Blast to na_te.dros performed 2015-02-10 20:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6870 175..324 133 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6932 176..329 129 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2483 175..325 127 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6898 175..325 126 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2494..2536 294..336 116 74.4 Plus
roo 9092 roo DM_ROO 9092bp 1084..1113 175..204 114 86.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6825 175..198 111 95.8 Plus

BS01082.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:18 Download gff for BS01082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9874-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:02 Download gff for BS01082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9874-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:53:50 Download gff for BS01082.5prime
Subject Subject Range Query Range Percent Splice Strand
Tbp-RA 182..1021 7..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:13 Download gff for BS01082.5prime
Subject Subject Range Query Range Percent Splice Strand
Tbp-RA 182..1021 7..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:13 Download gff for BS01082.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21686558..21686605 801..847 95 <- Minus
2R 21686670..21687461 7..800 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:53:50 Download gff for BS01082.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17574063..17574110 801..847 95 <- Minus
arm_2R 17574175..17574966 7..800 99   Minus

BS01082.complete Sequence

1096 bp (1096 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634519

> BS01082.complete
GAAGTTATCAGTCGACATGGACCAAATGCTAAGCCCCAACTTCTCGATTC
CGAGCATCGGAACGCCGCTCCACCAGATGGAAGCGGACCAGCAGATAGTG
GCCAATCCTGTGTACCATCCTCCGGCTGTATCGCAGCCGGATTCGTTGAT
GCCGGCACCCGGTTCCAGTTCCGTGCAGCACCAGCAGCAGCAACAGCAGT
CGGACGCCAGTGGGGGATCAGGTCTCTTTGGCCACGAACCATCGCTCCCG
CTGGCGCACAAACAAATGCAGAGTTACCAGCCATCGGCCTCCTATCAGCA
GCAGCAGCAGCAACAGCAGCTCCAGAGTCAGGCGCCCGGCGGCGGTGGGA
GCACTCCGCAGTCCATGATGCAGCCGCAGACGCCGCAGAGCATGATGGCC
CACATGATGCCCATGAGTGAGCGGAGTGTGGGCGGTTCGGGGGCCGGAGG
TGGCGGAGATGCCCTGAGCAACATCCACCAGACGATGGGCCCCTCCACGC
CGATGACACCAGCCACACCAGGTTCCGCTGATCCCGGTATTGTGCCACAA
CTTCAGAACATCGTGTCCACGGTTAATCTGTGCTGCAAACTGGACCTCAA
GAAAATAGCATTGCATGCGAGAAACGCCGAGTACAATCCTAAGCGATTTG
CGGCTGTGATTATGCGAATCCGAGAGCCCCGGACCACCGCCCTTATTTTC
AGCTCCGGCAAGATGGTGTGCACAGGGGCAAAGAGTGAGGACGACTCCAG
ACTGGCAGCGAGAAAGTATGCGCGCATCATCCAAAAGCTCGGTTTCCCTG
CAAAGTTCCTCGACTTTAAGATTCAAAACATGGTCGGCTCCTGCGATGTC
AAGTTCCCCATACGCTTGGAAGGCCTGGTGCTGACCCATTGCAACTTCAG
CAGCTACGAGCCTGAGCTATTTCCCGGCTTAATCTATCGTATGGTGCGAC
CTCGAATCGTGCTCCTCATCTTCGTGTCCGGAAAGGTGGTGCTCACTGGA
GCAAAGGTGCGGCAGGAGATCTACGATGCCTTCGACAAGATATTCCCCAT
TTTAAAGAAGTTCAAGAAGCAGTCATAACGAAGCTTTCTAGACCAT

BS01082.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Tbp-RA 1062 CG9874-PA 1..1062 17..1078 5310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Tbp-RA 1387 CG9874-RA 191..1252 17..1078 5310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21686669..21687452 800..17 3920 100 Minus
2R 25286936 2R 21686327..21686605 1078..800 1395 100 Minus
Blast to na_te.dros performed 2014-11-27 11:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6870 175..324 133 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6932 176..329 129 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2483 175..325 127 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6898 175..325 126 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2494..2536 294..336 116 74.4 Plus
roo 9092 roo DM_ROO 9092bp 1084..1113 175..204 114 86.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6825 175..198 111 95.8 Plus

BS01082.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:17 Download gff for BS01082.complete
Subject Subject Range Query Range Percent Splice Strand
Tbp-RA 1..1062 17..1078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:28 Download gff for BS01082.complete
Subject Subject Range Query Range Percent Splice Strand
Tbp-RA 180..1250 7..1078 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:18:45 Download gff for BS01082.complete
Subject Subject Range Query Range Percent Splice Strand
Tbp-RA 191..1252 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:17 Download gff for BS01082.complete
Subject Subject Range Query Range Percent Splice Strand
Tbp-RA 180..1250 7..1078 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:48 Download gff for BS01082.complete
Subject Subject Range Query Range Percent Splice Strand
Tbp-RA 191..1252 17..1080 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:48 Download gff for BS01082.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21686325..21686605 800..1080 99 <- Minus
2R 21686670..21687452 17..799 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:18:45 Download gff for BS01082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17573830..17574110 800..1080 99 <- Minus
arm_2R 17574175..17574957 17..799 100   Minus

BS01082.pep Sequence

Translation from 16 to 1077

> BS01082.pep
MDQMLSPNFSIPSIGTPLHQMEADQQIVANPVYHPPAVSQPDSLMPAPGS
SSVQHQQQQQQSDASGGSGLFGHEPSLPLAHKQMQSYQPSASYQQQQQQQ
QLQSQAPGGGGSTPQSMMQPQTPQSMMAHMMPMSERSVGGSGAGGGGDAL
SNIHQTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALH
ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARK
YARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE
LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFK
KQS*

BS01082.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Tbp-PA 353 CG9874-PA 1..353 1..353 1828 100 Plus
Trf-PA 224 CG7562-PA 22..223 148..351 586 55.9 Plus
Trf2-PJ 632 CG18009-PJ 204..377 179..352 350 41.5 Plus
Trf2-PH 632 CG18009-PH 204..377 179..352 350 41.5 Plus
Trf2-PI 1714 CG18009-PI 1286..1459 179..352 350 41.5 Plus