Clone Sequence Records
BS01082.3prime Sequence
938 bp (802 high quality bases) assembled on 2005-11-30
> BS01082.3prime
ATGGTCTAGAAAGCTTCGTTATGACTGCTTCTTGAACTTCTTTAAAATGG
GGAATATCTTGTCGAAGGCATCGTAGATCTCCTGCCGCACCTTTGCTCCA
GTGAGCACCACCTTTCCGGACACGAAGATGAGGAGCACGATTCGAGGTCG
CACCATACGATAGATTAAGCCGGGAAATAGCTCAGGCTCGTAGCTGCTGA
AGTTGCAATGGGTCAGCACCAGGCCTTCCAAGCGTATGGGGAACTTGACA
TCGCAGGAGCCGACCATGTTTTGAATCTTAAAGTCGAGGAACTTTGCAGG
GAAACCGAGCTTTTGGATGATGCGCGCATACTTTCTCGCTGCCAGTCTGG
AGTCGTCCTCACTCTTTGCCCCTGTGCACACCATCTTGCCGGAGCTGAAA
ATAAGGGCGGTGGTCCGGGGCTCTCGGATTCGCATAATCACAGCCGCAAA
TCGCTTAGGATTGTACTCGGCGTTTCTCGCATGCAATGCTATTTTCTTGA
GGTCCAGTTTGCAGCACAGATTAACCGTGGACACGATGTTCTGAAGTTGT
GGCACAATACCGGGATCAGCGGAACCTGGTGTGGCTGGTGTCATCGGCGT
GGAGGGGCCCATCGTCTGGTGGATGTTGCTCAGGGCATCTCCGCCACCTC
CGGCCCCCGAACCGCCCACACTCCGCTCACTCATGGGCATCATGTGGGCC
ATCATGCTCTGCGGCGTCTGCGGCTGCATCATGGACTGCGGAGTGCTCCC
ACCGCCGCCGGGCGCCTGACTCTGGAGCTGCTGTTGCTGCTGCTGCTGCT
GATAGGAGGCCGATGGCTGGTAACTCTGCATTTGTTTGTGCGCCAGCGGG
AGCGATGGTTCGTGGCCNAAGAGACCTGATCCCCCACTGGCGTCCGACTG
CTGTTGCTGCTGCTGGTGCTGCACGGAACTGGAACCGG
BS01082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9874-PA | 1062 | Tbp-RA | 143..1062 | 938..19 | 4581 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-RA | 1387 | CG9874-RA | 333..1252 | 938..19 | 4589 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21686669..21687310 | 297..938 | 3199 | 99.8 | Plus |
2R | 25286936 | 2R | 21686327..21686605 | 19..297 | 1395 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 12:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6870 | 922..773 | 135 | 57.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6932 | 921..768 | 131 | 59 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6898 | 922..772 | 128 | 58.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 922..772 | 127 | 58.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2536 | 803..761 | 116 | 74.4 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1084..1113 | 922..893 | 114 | 86.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6825 | 922..899 | 111 | 95.8 | Minus |
BS01082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:17 Download gff for
BS01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9874-PA | 143..1062 | 19..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:01 Download gff for
BS01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9874-PA | 143..1062 | 19..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:40:55 Download gff for
BS01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 333..1252 | 19..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:43:07 Download gff for
BS01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 333..1252 | 19..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:43:07 Download gff for
BS01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21686327..21686605 | 19..297 | 100 | <- | Plus |
2R | 21686670..21687310 | 298..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:40:55 Download gff for
BS01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17573832..17574110 | 19..297 | 100 | <- | Plus |
arm_2R | 17574175..17574815 | 298..938 | 99 | | Plus |
BS01082.5prime Sequence
847 bp (792 high quality bases) assembled on 2005-11-30
> BS01082.5prime
GAAGTTATCAGTCGACATGGACCAAATGCTAAGCCCCAACTTCTCGATTC
CGAGCATCGGAACGCCGCTCCACCAGATGGAAGCGGACCAGCAGATAGTG
GCCAATCCTGTGTACCATCCTCCGGCTGTATCGCAGCCGGATTCGTTGAT
GCCGGCACCCGGTTCCAGTTCCGTGCAGCACCAGCAGCAGCAACAGCAGT
CGGACGCCAGTGGGGGATCAGGTCTCTTTGGCCACGAACCATCGCTCCCG
CTGGCGCACAAACAAATGCAGAGTTACCAGCCATCGGCCTCCTATCAGCA
GCAGCAGCAGCAACAGCAGCTCCAGAGTCAGGCGCCCGGCGGCGGTGGGA
GCACTCCGCAGTCCATGATGCAGCCGCAGACGCCGCAGAGCATGATGGCC
CACATGATGCCCATGAGTGAGCGGAGTGTGGGCGGTTCGGGGGCCGGAGG
TGGCGGAGATGCCCTGAGCAACATCCACCAGACGATGGGCCCCTCCACGC
CGATGACACCAGCCACACCAGGTTCCGCTGATCCCGGTATTGTGCCACAA
CTTCAGAACATCGTGTCCACGGTTAATCTGTGCTGCAAACTGGACCTCAA
GAAAATAGCATTGCATGCGAGAAACGCCGAGTACAATCCTAAGCGATTTG
CGGCTGTGATTATGCGAATCCGAGAGCCCCGGACCACCGCCCTTATTTTC
AGCTCCGGCAAGATGGTGTGCACAGGGGCAAAGAGTGAGGACGACTCCAG
ACTGGCAGCGAGAAAGTATGCGCGCATCATCCAAAAGCTCGGTTTCCCCT
GCAAAGTCCTCGACTTTANGATTCAAAACATGGTCGGCTCCTGCGAT
BS01082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9874-PA | 1062 | Tbp-RA | 1..782 | 17..798 | 3910 | 100 | Plus |
CG9874-PA | 1062 | Tbp-RA | 791..831 | 807..847 | 186 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-RA | 1387 | CG9874-RA | 191..1021 | 17..847 | 4099 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21686671..21687452 | 798..17 | 3910 | 100 | Minus |
2R | 25286936 | 2R | 21686558..21686598 | 847..807 | 194 | 97.6 | Minus |
Blast to na_te.dros performed 2015-02-10 20:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6870 | 175..324 | 133 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6932 | 176..329 | 129 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 175..325 | 127 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6898 | 175..325 | 126 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2536 | 294..336 | 116 | 74.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1084..1113 | 175..204 | 114 | 86.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6825 | 175..198 | 111 | 95.8 | Plus |
BS01082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:18 Download gff for
BS01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9874-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:02 Download gff for
BS01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9874-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:53:50 Download gff for
BS01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 182..1021 | 7..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:13 Download gff for
BS01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 182..1021 | 7..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:13 Download gff for
BS01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21686558..21686605 | 801..847 | 95 | <- | Minus |
2R | 21686670..21687461 | 7..800 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:53:50 Download gff for
BS01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17574063..17574110 | 801..847 | 95 | <- | Minus |
arm_2R | 17574175..17574966 | 7..800 | 99 | | Minus |
BS01082.complete Sequence
1096 bp (1096 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634519
> BS01082.complete
GAAGTTATCAGTCGACATGGACCAAATGCTAAGCCCCAACTTCTCGATTC
CGAGCATCGGAACGCCGCTCCACCAGATGGAAGCGGACCAGCAGATAGTG
GCCAATCCTGTGTACCATCCTCCGGCTGTATCGCAGCCGGATTCGTTGAT
GCCGGCACCCGGTTCCAGTTCCGTGCAGCACCAGCAGCAGCAACAGCAGT
CGGACGCCAGTGGGGGATCAGGTCTCTTTGGCCACGAACCATCGCTCCCG
CTGGCGCACAAACAAATGCAGAGTTACCAGCCATCGGCCTCCTATCAGCA
GCAGCAGCAGCAACAGCAGCTCCAGAGTCAGGCGCCCGGCGGCGGTGGGA
GCACTCCGCAGTCCATGATGCAGCCGCAGACGCCGCAGAGCATGATGGCC
CACATGATGCCCATGAGTGAGCGGAGTGTGGGCGGTTCGGGGGCCGGAGG
TGGCGGAGATGCCCTGAGCAACATCCACCAGACGATGGGCCCCTCCACGC
CGATGACACCAGCCACACCAGGTTCCGCTGATCCCGGTATTGTGCCACAA
CTTCAGAACATCGTGTCCACGGTTAATCTGTGCTGCAAACTGGACCTCAA
GAAAATAGCATTGCATGCGAGAAACGCCGAGTACAATCCTAAGCGATTTG
CGGCTGTGATTATGCGAATCCGAGAGCCCCGGACCACCGCCCTTATTTTC
AGCTCCGGCAAGATGGTGTGCACAGGGGCAAAGAGTGAGGACGACTCCAG
ACTGGCAGCGAGAAAGTATGCGCGCATCATCCAAAAGCTCGGTTTCCCTG
CAAAGTTCCTCGACTTTAAGATTCAAAACATGGTCGGCTCCTGCGATGTC
AAGTTCCCCATACGCTTGGAAGGCCTGGTGCTGACCCATTGCAACTTCAG
CAGCTACGAGCCTGAGCTATTTCCCGGCTTAATCTATCGTATGGTGCGAC
CTCGAATCGTGCTCCTCATCTTCGTGTCCGGAAAGGTGGTGCTCACTGGA
GCAAAGGTGCGGCAGGAGATCTACGATGCCTTCGACAAGATATTCCCCAT
TTTAAAGAAGTTCAAGAAGCAGTCATAACGAAGCTTTCTAGACCAT
BS01082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-RA | 1062 | CG9874-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-RA | 1387 | CG9874-RA | 191..1252 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21686669..21687452 | 800..17 | 3920 | 100 | Minus |
2R | 25286936 | 2R | 21686327..21686605 | 1078..800 | 1395 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 11:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6870 | 175..324 | 133 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6932 | 176..329 | 129 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 175..325 | 127 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6898 | 175..325 | 126 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2536 | 294..336 | 116 | 74.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1084..1113 | 175..204 | 114 | 86.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6825 | 175..198 | 111 | 95.8 | Plus |
BS01082.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:17 Download gff for
BS01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 1..1062 | 17..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:28 Download gff for
BS01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 180..1250 | 7..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:18:45 Download gff for
BS01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 191..1252 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:17 Download gff for
BS01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 180..1250 | 7..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:48 Download gff for
BS01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 191..1252 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:48 Download gff for
BS01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21686325..21686605 | 800..1080 | 99 | <- | Minus |
2R | 21686670..21687452 | 17..799 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:18:45 Download gff for
BS01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17573830..17574110 | 800..1080 | 99 | <- | Minus |
arm_2R | 17574175..17574957 | 17..799 | 100 | | Minus |
BS01082.pep Sequence
Translation from 16 to 1077
> BS01082.pep
MDQMLSPNFSIPSIGTPLHQMEADQQIVANPVYHPPAVSQPDSLMPAPGS
SSVQHQQQQQQSDASGGSGLFGHEPSLPLAHKQMQSYQPSASYQQQQQQQ
QLQSQAPGGGGSTPQSMMQPQTPQSMMAHMMPMSERSVGGSGAGGGGDAL
SNIHQTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALH
ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARK
YARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE
LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFK
KQS*
BS01082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-PA | 353 | CG9874-PA | 1..353 | 1..353 | 1828 | 100 | Plus |
Trf-PA | 224 | CG7562-PA | 22..223 | 148..351 | 586 | 55.9 | Plus |
Trf2-PJ | 632 | CG18009-PJ | 204..377 | 179..352 | 350 | 41.5 | Plus |
Trf2-PH | 632 | CG18009-PH | 204..377 | 179..352 | 350 | 41.5 | Plus |
Trf2-PI | 1714 | CG18009-PI | 1286..1459 | 179..352 | 350 | 41.5 | Plus |