Clone BS01084 Report

Search the DGRC for BS01084

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG17912-RA
Protein status:BS01084.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01084.3prime Sequence

851 bp (850 high quality bases) assembled on 2005-11-30

> BS01084.3prime
ATGGTCTAGAAAGCTTCGTTATTTATATTGACTATGGTTTCTATAACTAT
GATAAGAACTCACTTCCTGGGCCTTCGACATGGCTGCGGAGACGACAATC
GAGTTAGCCATGCCACTGCTGCTATTGCTACCCGTGGGCGAGATCCCGGC
CAGCGACGGGGGCGGCGGAGTGGTGGGAATCGACGTAGAGGGGCCACCAT
TGTTGCTGGGACTCTTGCGACTTTGTGGATTCGCCAGTGAAGCCAAAGCG
GCCGCCAACCGTGCTTGTATTTTCGGTTGGCGCGCGCGCAATTCTTCCAG
ACTCAGGTCCTCCTGTGGATGCATAATCTTTGTGGTCACAGCAGCAGCGG
AAGTTCCGCTTGCCGCCGGTGGAGCTGGAGGTCGCTGCTGGTGTTGCTGA
GCATCTGGCGGACCACTTGGTGGTGCGCTGGATGCGCCACCAGCATGATT
GGTGGTAGGCGGAGCACTTATGGTAGCATTACTGTACGCTGGAAATGTTG
GCTTTTGTTGAGCCATGGCGGCGGCGTGGTGATGATGGGCCGCCGCCGCA
GCAGCTGCCGCCGATGTTGTGGCCATGGCGGCTGGAAACAAAGGACGCGG
AGGCATCATGTGCGGCATCATGGGCACTGGATACGGAGGCAGTGGCGGCA
TGTGCTGCATCATGCCCATGCCGTACTGCCCCAGCATGTGCGGTGGCATC
ATGTTCGGGGGCATCATCATAGGCGGCGGTACACTCATGGCATATTCTAC
TTTCTTTTTGGCCACCGGTTCATCATCGTCCGAATCAGACTTGCCACCAT
TCTTCTGACGTTCGTGATCCCTGAGATCCTCGGCGGGGATGCCGTCCATG
C

BS01084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17912-PA 1074 CG17912-RA 242..1074 851..19 4140 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17912-RA 1612 CG17912-RA 367..1199 851..19 4150 99.9 Minus
CG17912-RD 6091 CG17912-RD 367..1154 851..64 3925 99.9 Minus
CG17912-RC 4400 CG17912-RC 367..1154 851..64 3925 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16744688..16745152 483..19 2325 100 Minus
2L 23513712 2L 16744124..16744385 743..482 1310 100 Minus
2L 23513712 2L 16743960..16744067 851..744 525 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 19:35:57 has no hits.

BS01084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:19 Download gff for BS01084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17912-PA 242..1074 19..851 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:03 Download gff for BS01084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17912-PA 242..1074 19..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:26:17 Download gff for BS01084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17912-RA 367..1199 19..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:28 Download gff for BS01084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17912-RA 367..1199 19..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:28 Download gff for BS01084.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16744124..16744385 482..743 100 -> Minus
2L 16743960..16744067 744..851 99 -> Minus
2L 16744690..16745152 19..481 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:26:17 Download gff for BS01084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16743960..16744067 744..851 99 -> Minus
arm_2L 16744124..16744385 482..743 100 -> Minus
arm_2L 16744690..16745152 19..481 100   Minus

BS01084.5prime Sequence

865 bp (812 high quality bases) assembled on 2005-11-30

> BS01084.5prime
GAAGTTATCAGTCGACATGGGACGCAAGAAGAAGAAGGCCTCCAAACCCT
GGTGCTGGTACTGCAACCGTGAGTTCGATGACGAAAAGATCCTTGTGCAG
CACCAGAAGGCCAAGCACTTCAAATGCCACATCTGCCACAAGAAGTTGTA
CACCGGACCCGGACTATCCATACACTGCATGCAGGTGCACAAGGAAACGG
TGGACAAGGTCCCCAACTCGCTGCCCAATCGCTCAAATATTGAAGTCGAA
ATCTTTGGCATGGACGGCATTCCCGCCGAGGATCTCAGGGATCACGAACG
TCAGAAGAATGGTGGCAAGTCTGATTCGGACGATGATGAACCGGTGGCCA
AAAAGAAAGTAGAATATGCCATGAGTGTACCGCCGCCTATGATGATGCCC
CCGAACATGATGCCACCGCACATGCTGGGGCAGTACGGCATGGGCATGAT
GCAGCACATGCCGCCACTGCCTCCGTATCCAGTGCCCATGATGCCGCACA
TGATGCCTCCGCGTCCTTTGTTTCCAGCCGCCATGGCCACAACATCGGCG
GCAGCTGCTGCGGCGGCGGCCCATCATCACCACGCCGCCGCCATGGCTCA
ACAAAAGCCAACATTTCCAGCGTACAGTAATGCTACCATAAGTGCTCCGC
CTACCACCAATCATGCTGGTGGCGCATCCAGCGCACCACCAAGTGGTCCG
CCAGATGCTCAGCAACACCAGCAGCGACCTCCAGCTCCACCGGCGGCAAG
CGGAACTTCCGCTGCTGCTGTGACCACAAAGATTATGCATCCACAGGAGG
ACCTGAGTCTGGAAGAATTGCGCGCGCGCCACCGAAAATACAAGCACGGT
TGGCGGCCGCTTTTG

BS01084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17912-PA 1074 CG17912-RA 1..815 17..831 4075 100 Plus
CG17912-PA 1074 CG17912-RA 816..848 831..863 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17912-RD 6091 CG17912-RD 125..973 16..863 4220 99.9 Plus
CG17912-RC 4400 CG17912-RC 125..973 16..863 4220 99.9 Plus
CG17912-RG 3709 CG17912-RG 125..973 16..863 4220 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16743759..16744067 57..365 1545 100 Plus
2L 23513712 2L 16744124..16744385 366..627 1310 100 Plus
2L 23513712 2L 16744688..16744926 626..863 1145 99.6 Plus
2L 23513712 2L 16743529..16743573 16..60 225 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:35:53 has no hits.

BS01084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:20 Download gff for BS01084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17912-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:04 Download gff for BS01084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17912-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:50:21 Download gff for BS01084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17912-RG 120..974 10..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:25:41 Download gff for BS01084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17912-RG 120..974 10..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:25:41 Download gff for BS01084.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16743760..16744067 58..365 100 -> Plus
2L 16744124..16744385 366..627 100 -> Plus
2L 16744690..16744927 628..865 99   Plus
2L 16743524..16743570 10..57 93 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:50:21 Download gff for BS01084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16743524..16743570 10..57 93 -> Plus
arm_2L 16743760..16744067 58..365 100 -> Plus
arm_2L 16744124..16744385 366..627 100 -> Plus
arm_2L 16744690..16744927 628..865 99   Plus

BS01084.complete Sequence

1108 bp (1108 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634520

> BS01084.complete
GAAGTTATCAGTCGACATGGGACGCAAGAAGAAGAAGGCCTCCAAACCCT
GGTGCTGGTACTGCAACCGTGAGTTCGATGACGAAAAGATCCTTGTGCAG
CACCAGAAGGCCAAGCACTTCAAATGCCACATCTGCCACAAGAAGTTGTA
CACCGGACCCGGACTATCCATACACTGCATGCAGGTGCACAAGGAAACGG
TGGACAAGGTCCCCAACTCGCTGCCCAATCGCTCAAATATTGAAGTCGAA
ATCTTTGGCATGGACGGCATTCCCGCCGAGGATCTCAGGGATCACGAACG
TCAGAAGAATGGTGGCAAGTCTGATTCGGACGATGATGAACCGGTGGCCA
AAAAGAAAGTAGAATATGCCATGAGTGTACCGCCGCCTATGATGATGCCC
CCGAACATGATGCCACCGCACATGCTGGGGCAGTACGGCATGGGCATGAT
GCAGCACATGCCGCCACTGCCTCCGTATCCAGTGCCCATGATGCCGCACA
TGATGCCTCCGCGTCCTTTGTTTCCAGCCGCCATGGCCACAACATCGGCG
GCAGCTGCTGCGGCGGCGGCCCATCATCACCACGCCGCCGCCATGGCTCA
ACAAAAGCCAACATTTCCAGCGTACAGTAATGCTACCATAAGTGCTCCGC
CTACCACCAATCATGCTGGTGGCGCATCCAGCGCACCACCAAGTGGTCCG
CCAGATGCTCAGCAACACCAGCAGCGACCTCCAGCTCCACCGGCGGCAAG
CGGAACTTCCGCTGCTGCTGTGACCACAAAGATTATGCATCCACAGGAGG
ACCTGAGTCTGGAAGAATTGCGCGCGCGCCAACCGAAAATACAAGCACGG
TTGGCGGCCGCTTTGGCTTCACTGGCGAATCCACAAAGTCGCAAGAGTCC
CAGCAACAATGGTGGCCCCTCTACGTCGATTCCCACCACTCCGCCGCCCC
CGTCGCTGGCCGGGATCTCGCCCACGGGTAGCAATAGCAGCAGTGGCATG
GCTAACTCGATTGTCGTCTCCGCAGCCATGTCGAAGGCCCAGGAAGTGAG
TTCTTATCATAGTTATAGAAACCATAGTCAATATAAATAACGAAGCTTTC
TAGACCAT

BS01084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17912-RA 1074 CG17912-PA 1..1074 17..1090 5370 100 Plus
CG17912-RD 1689 CG17912-PD 1..1029 17..1045 5145 100 Plus
CG17912-RC 1689 CG17912-PC 1..1029 17..1045 5145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17912-RA 1612 CG17912-RA 125..1199 16..1090 5375 100 Plus
CG17912-RD 6091 CG17912-RD 125..1154 16..1045 5150 100 Plus
CG17912-RC 4400 CG17912-RC 125..1154 16..1045 5150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16744688..16745152 626..1090 2325 100 Plus
2L 23513712 2L 16743759..16744067 57..365 1545 100 Plus
2L 23513712 2L 16744124..16744385 366..627 1310 100 Plus
2L 23513712 2L 16743529..16743573 16..60 225 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:27:55 has no hits.

BS01084.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:18 Download gff for BS01084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17912-RA 1..1074 17..1090 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:30 Download gff for BS01084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17912-RA 121..1200 10..1090 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:42 Download gff for BS01084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17912-RA 126..1199 17..1092 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:18 Download gff for BS01084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17912-RA 121..1200 10..1090 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:55 Download gff for BS01084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17912-RA 126..1199 17..1092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:55 Download gff for BS01084.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16743530..16743570 17..57 100 -> Plus
2L 16743760..16744067 58..365 100 -> Plus
2L 16744124..16744385 366..627 100 -> Plus
2L 16744690..16745152 628..1092 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:42 Download gff for BS01084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16743530..16743570 17..57 100 -> Plus
arm_2L 16743760..16744067 58..365 100 -> Plus
arm_2L 16744124..16744385 366..627 100 -> Plus
arm_2L 16744690..16745152 628..1092 99   Plus

BS01084.pep Sequence

Translation from 16 to 1089

> BS01084.pep
MGRKKKKASKPWCWYCNREFDDEKILVQHQKAKHFKCHICHKKLYTGPGL
SIHCMQVHKETVDKVPNSLPNRSNIEVEIFGMDGIPAEDLRDHERQKNGG
KSDSDDDEPVAKKKVEYAMSVPPPMMMPPNMMPPHMLGQYGMGMMQHMPP
LPPYPVPMMPHMMPPRPLFPAAMATTSAAAAAAAAHHHHAAAMAQQKPTF
PAYSNATISAPPTTNHAGGASSAPPSGPPDAQQHQQRPPAPPAASGTSAA
AVTTKIMHPQEDLSLEELRARQPKIQARLAAALASLANPQSRKSPSNNGG
PSTSIPTTPPPPSLAGISPTGSNSSSGMANSIVVSAAMSKAQEVSSYHSY
RNHSQYK*

BS01084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17912-PA 357 CG17912-PA 1..357 1..357 1916 100 Plus
CG17912-PG 476 CG17912-PG 1..343 1..343 1838 100 Plus
CG17912-PD 562 CG17912-PD 1..343 1..343 1838 100 Plus
CG17912-PC 562 CG17912-PC 1..343 1..343 1838 100 Plus
CG17912-PB 562 CG17912-PB 1..343 1..343 1838 100 Plus