Clone Sequence Records
BS01084.3prime Sequence
851 bp (850 high quality bases) assembled on 2005-11-30
> BS01084.3prime
ATGGTCTAGAAAGCTTCGTTATTTATATTGACTATGGTTTCTATAACTAT
GATAAGAACTCACTTCCTGGGCCTTCGACATGGCTGCGGAGACGACAATC
GAGTTAGCCATGCCACTGCTGCTATTGCTACCCGTGGGCGAGATCCCGGC
CAGCGACGGGGGCGGCGGAGTGGTGGGAATCGACGTAGAGGGGCCACCAT
TGTTGCTGGGACTCTTGCGACTTTGTGGATTCGCCAGTGAAGCCAAAGCG
GCCGCCAACCGTGCTTGTATTTTCGGTTGGCGCGCGCGCAATTCTTCCAG
ACTCAGGTCCTCCTGTGGATGCATAATCTTTGTGGTCACAGCAGCAGCGG
AAGTTCCGCTTGCCGCCGGTGGAGCTGGAGGTCGCTGCTGGTGTTGCTGA
GCATCTGGCGGACCACTTGGTGGTGCGCTGGATGCGCCACCAGCATGATT
GGTGGTAGGCGGAGCACTTATGGTAGCATTACTGTACGCTGGAAATGTTG
GCTTTTGTTGAGCCATGGCGGCGGCGTGGTGATGATGGGCCGCCGCCGCA
GCAGCTGCCGCCGATGTTGTGGCCATGGCGGCTGGAAACAAAGGACGCGG
AGGCATCATGTGCGGCATCATGGGCACTGGATACGGAGGCAGTGGCGGCA
TGTGCTGCATCATGCCCATGCCGTACTGCCCCAGCATGTGCGGTGGCATC
ATGTTCGGGGGCATCATCATAGGCGGCGGTACACTCATGGCATATTCTAC
TTTCTTTTTGGCCACCGGTTCATCATCGTCCGAATCAGACTTGCCACCAT
TCTTCTGACGTTCGTGATCCCTGAGATCCTCGGCGGGGATGCCGTCCATG
C
BS01084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-PA | 1074 | CG17912-RA | 242..1074 | 851..19 | 4140 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-RA | 1612 | CG17912-RA | 367..1199 | 851..19 | 4150 | 99.9 | Minus |
CG17912-RD | 6091 | CG17912-RD | 367..1154 | 851..64 | 3925 | 99.9 | Minus |
CG17912-RC | 4400 | CG17912-RC | 367..1154 | 851..64 | 3925 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16744688..16745152 | 483..19 | 2325 | 100 | Minus |
2L | 23513712 | 2L | 16744124..16744385 | 743..482 | 1310 | 100 | Minus |
2L | 23513712 | 2L | 16743960..16744067 | 851..744 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:35:57 has no hits.
BS01084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:19 Download gff for
BS01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-PA | 242..1074 | 19..851 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:03 Download gff for
BS01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-PA | 242..1074 | 19..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:26:17 Download gff for
BS01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 367..1199 | 19..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:28 Download gff for
BS01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 367..1199 | 19..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:28 Download gff for
BS01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16744124..16744385 | 482..743 | 100 | -> | Minus |
2L | 16743960..16744067 | 744..851 | 99 | -> | Minus |
2L | 16744690..16745152 | 19..481 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:26:17 Download gff for
BS01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16743960..16744067 | 744..851 | 99 | -> | Minus |
arm_2L | 16744124..16744385 | 482..743 | 100 | -> | Minus |
arm_2L | 16744690..16745152 | 19..481 | 100 | | Minus |
BS01084.5prime Sequence
865 bp (812 high quality bases) assembled on 2005-11-30
> BS01084.5prime
GAAGTTATCAGTCGACATGGGACGCAAGAAGAAGAAGGCCTCCAAACCCT
GGTGCTGGTACTGCAACCGTGAGTTCGATGACGAAAAGATCCTTGTGCAG
CACCAGAAGGCCAAGCACTTCAAATGCCACATCTGCCACAAGAAGTTGTA
CACCGGACCCGGACTATCCATACACTGCATGCAGGTGCACAAGGAAACGG
TGGACAAGGTCCCCAACTCGCTGCCCAATCGCTCAAATATTGAAGTCGAA
ATCTTTGGCATGGACGGCATTCCCGCCGAGGATCTCAGGGATCACGAACG
TCAGAAGAATGGTGGCAAGTCTGATTCGGACGATGATGAACCGGTGGCCA
AAAAGAAAGTAGAATATGCCATGAGTGTACCGCCGCCTATGATGATGCCC
CCGAACATGATGCCACCGCACATGCTGGGGCAGTACGGCATGGGCATGAT
GCAGCACATGCCGCCACTGCCTCCGTATCCAGTGCCCATGATGCCGCACA
TGATGCCTCCGCGTCCTTTGTTTCCAGCCGCCATGGCCACAACATCGGCG
GCAGCTGCTGCGGCGGCGGCCCATCATCACCACGCCGCCGCCATGGCTCA
ACAAAAGCCAACATTTCCAGCGTACAGTAATGCTACCATAAGTGCTCCGC
CTACCACCAATCATGCTGGTGGCGCATCCAGCGCACCACCAAGTGGTCCG
CCAGATGCTCAGCAACACCAGCAGCGACCTCCAGCTCCACCGGCGGCAAG
CGGAACTTCCGCTGCTGCTGTGACCACAAAGATTATGCATCCACAGGAGG
ACCTGAGTCTGGAAGAATTGCGCGCGCGCCACCGAAAATACAAGCACGGT
TGGCGGCCGCTTTTG
BS01084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-PA | 1074 | CG17912-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
CG17912-PA | 1074 | CG17912-RA | 816..848 | 831..863 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-RD | 6091 | CG17912-RD | 125..973 | 16..863 | 4220 | 99.9 | Plus |
CG17912-RC | 4400 | CG17912-RC | 125..973 | 16..863 | 4220 | 99.9 | Plus |
CG17912-RG | 3709 | CG17912-RG | 125..973 | 16..863 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16743759..16744067 | 57..365 | 1545 | 100 | Plus |
2L | 23513712 | 2L | 16744124..16744385 | 366..627 | 1310 | 100 | Plus |
2L | 23513712 | 2L | 16744688..16744926 | 626..863 | 1145 | 99.6 | Plus |
2L | 23513712 | 2L | 16743529..16743573 | 16..60 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:35:53 has no hits.
BS01084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:20 Download gff for
BS01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:04 Download gff for
BS01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:50:21 Download gff for
BS01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RG | 120..974 | 10..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:25:41 Download gff for
BS01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RG | 120..974 | 10..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:25:41 Download gff for
BS01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16743760..16744067 | 58..365 | 100 | -> | Plus |
2L | 16744124..16744385 | 366..627 | 100 | -> | Plus |
2L | 16744690..16744927 | 628..865 | 99 | | Plus |
2L | 16743524..16743570 | 10..57 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:50:21 Download gff for
BS01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16743524..16743570 | 10..57 | 93 | -> | Plus |
arm_2L | 16743760..16744067 | 58..365 | 100 | -> | Plus |
arm_2L | 16744124..16744385 | 366..627 | 100 | -> | Plus |
arm_2L | 16744690..16744927 | 628..865 | 99 | | Plus |
BS01084.complete Sequence
1108 bp (1108 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634520
> BS01084.complete
GAAGTTATCAGTCGACATGGGACGCAAGAAGAAGAAGGCCTCCAAACCCT
GGTGCTGGTACTGCAACCGTGAGTTCGATGACGAAAAGATCCTTGTGCAG
CACCAGAAGGCCAAGCACTTCAAATGCCACATCTGCCACAAGAAGTTGTA
CACCGGACCCGGACTATCCATACACTGCATGCAGGTGCACAAGGAAACGG
TGGACAAGGTCCCCAACTCGCTGCCCAATCGCTCAAATATTGAAGTCGAA
ATCTTTGGCATGGACGGCATTCCCGCCGAGGATCTCAGGGATCACGAACG
TCAGAAGAATGGTGGCAAGTCTGATTCGGACGATGATGAACCGGTGGCCA
AAAAGAAAGTAGAATATGCCATGAGTGTACCGCCGCCTATGATGATGCCC
CCGAACATGATGCCACCGCACATGCTGGGGCAGTACGGCATGGGCATGAT
GCAGCACATGCCGCCACTGCCTCCGTATCCAGTGCCCATGATGCCGCACA
TGATGCCTCCGCGTCCTTTGTTTCCAGCCGCCATGGCCACAACATCGGCG
GCAGCTGCTGCGGCGGCGGCCCATCATCACCACGCCGCCGCCATGGCTCA
ACAAAAGCCAACATTTCCAGCGTACAGTAATGCTACCATAAGTGCTCCGC
CTACCACCAATCATGCTGGTGGCGCATCCAGCGCACCACCAAGTGGTCCG
CCAGATGCTCAGCAACACCAGCAGCGACCTCCAGCTCCACCGGCGGCAAG
CGGAACTTCCGCTGCTGCTGTGACCACAAAGATTATGCATCCACAGGAGG
ACCTGAGTCTGGAAGAATTGCGCGCGCGCCAACCGAAAATACAAGCACGG
TTGGCGGCCGCTTTGGCTTCACTGGCGAATCCACAAAGTCGCAAGAGTCC
CAGCAACAATGGTGGCCCCTCTACGTCGATTCCCACCACTCCGCCGCCCC
CGTCGCTGGCCGGGATCTCGCCCACGGGTAGCAATAGCAGCAGTGGCATG
GCTAACTCGATTGTCGTCTCCGCAGCCATGTCGAAGGCCCAGGAAGTGAG
TTCTTATCATAGTTATAGAAACCATAGTCAATATAAATAACGAAGCTTTC
TAGACCAT
BS01084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-RA | 1074 | CG17912-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
CG17912-RD | 1689 | CG17912-PD | 1..1029 | 17..1045 | 5145 | 100 | Plus |
CG17912-RC | 1689 | CG17912-PC | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-RA | 1612 | CG17912-RA | 125..1199 | 16..1090 | 5375 | 100 | Plus |
CG17912-RD | 6091 | CG17912-RD | 125..1154 | 16..1045 | 5150 | 100 | Plus |
CG17912-RC | 4400 | CG17912-RC | 125..1154 | 16..1045 | 5150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16744688..16745152 | 626..1090 | 2325 | 100 | Plus |
2L | 23513712 | 2L | 16743759..16744067 | 57..365 | 1545 | 100 | Plus |
2L | 23513712 | 2L | 16744124..16744385 | 366..627 | 1310 | 100 | Plus |
2L | 23513712 | 2L | 16743529..16743573 | 16..60 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:27:55 has no hits.
BS01084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:18 Download gff for
BS01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 1..1074 | 17..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:30 Download gff for
BS01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 121..1200 | 10..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:42 Download gff for
BS01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 126..1199 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:18 Download gff for
BS01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 121..1200 | 10..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:55 Download gff for
BS01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 126..1199 | 17..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:55 Download gff for
BS01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16743530..16743570 | 17..57 | 100 | -> | Plus |
2L | 16743760..16744067 | 58..365 | 100 | -> | Plus |
2L | 16744124..16744385 | 366..627 | 100 | -> | Plus |
2L | 16744690..16745152 | 628..1092 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:42 Download gff for
BS01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16743530..16743570 | 17..57 | 100 | -> | Plus |
arm_2L | 16743760..16744067 | 58..365 | 100 | -> | Plus |
arm_2L | 16744124..16744385 | 366..627 | 100 | -> | Plus |
arm_2L | 16744690..16745152 | 628..1092 | 99 | | Plus |
BS01084.pep Sequence
Translation from 16 to 1089
> BS01084.pep
MGRKKKKASKPWCWYCNREFDDEKILVQHQKAKHFKCHICHKKLYTGPGL
SIHCMQVHKETVDKVPNSLPNRSNIEVEIFGMDGIPAEDLRDHERQKNGG
KSDSDDDEPVAKKKVEYAMSVPPPMMMPPNMMPPHMLGQYGMGMMQHMPP
LPPYPVPMMPHMMPPRPLFPAAMATTSAAAAAAAAHHHHAAAMAQQKPTF
PAYSNATISAPPTTNHAGGASSAPPSGPPDAQQHQQRPPAPPAASGTSAA
AVTTKIMHPQEDLSLEELRARQPKIQARLAAALASLANPQSRKSPSNNGG
PSTSIPTTPPPPSLAGISPTGSNSSSGMANSIVVSAAMSKAQEVSSYHSY
RNHSQYK*
BS01084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-PA | 357 | CG17912-PA | 1..357 | 1..357 | 1916 | 100 | Plus |
CG17912-PG | 476 | CG17912-PG | 1..343 | 1..343 | 1838 | 100 | Plus |
CG17912-PD | 562 | CG17912-PD | 1..343 | 1..343 | 1838 | 100 | Plus |
CG17912-PC | 562 | CG17912-PC | 1..343 | 1..343 | 1838 | 100 | Plus |
CG17912-PB | 562 | CG17912-PB | 1..343 | 1..343 | 1838 | 100 | Plus |