Clone BS01086 Report

Search the DGRC for BS01086

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptTfIIA-L-RA
Protein status:BS01086.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01086.3prime Sequence

916 bp (820 high quality bases) assembled on 2005-11-30

> BS01086.3prime
ATGGTCTAGAAAGCTTCGTTACCACTCGGCGTCGCCATTCGATTTCTGGA
ACACGTAGTCCTTGCCCCGCATGTTCATGATGCCATCTTTGAGATAGAAT
TTCCATTTGTTTCGCGACCTGGTGATCTTATCGTACTGACAAACAATCAC
GTTATCTGTGTCAAACATTTCGGCAGAGTCTTCGTCGGTGACATCGTCTT
CGCTGTTGAGCGGCTCCTCCTCGGCAGCATCCTCGTGCTCCGCATCCTCG
TCATCGTCCTTGTCTAGGTCATCGTCGTCATCGTTGTCGATGTTGTCGTC
GCTCTCCTCGCTTTCATCCTCATCGGAGGAGTCCAGGGCACCGTCCAATT
GCTTGGCGGCGGCAAGAGTTTTCTGGTGATTGGCGCTGCTTAGCGCTGCG
TTTACGTGCTGCTGAAGCACAGACGAGGCCAACGTGGTGGGCAAGGACAT
GATGGATGAAATCAGGTGGGCCGTCAGAATTTGGGTCAACTGATTCTCCT
GCAGCGCGGAGGCAGGCACTTGTATGGTGAGCACTCGAGATTCCGAACTG
GCAGAGCCGGCTGGCGATGGCAGCGTGATGTTAACAGGCATAATGCGATT
GGGGTCCAGCGTGGCCACAATTGGAATGGAACCCTGTCCACTGCTCGCCG
CCTGCTGCTGTTTCTGCATCATGCTTGCAGCCGAGGTAGGATGCAGTGGC
GGTGGATTCTGTGAGTTGACTTCCTGCTTGATGGGCACCAGCCCGTTCCT
TATGCCGCTGCCGGCGGCCATTCCAGCGGACGACTTAAGCCCCACCAGCG
AGGACATGGAGCTGTTGCCGCCGATATGTTGGTGTGATGTGACCGCGGTT
GCGGCGGCGGCCTTCTTGGCCTTGGCATTCGCTGCCTTGTGGCTCTTTGG
ATTTGTGCCACGATGG

BS01086.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5930-PA 1101 TfIIA-L-RA 217..1101 903..19 4425 100 Minus
CG5930-PC 975 TfIIA-L-RC 106..975 888..19 4350 100 Minus
CG5930-PB 1092 TfIIA-L-RB 223..1092 888..19 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-RA 1595 CG5930-RA 375..1273 916..19 4440 99.7 Minus
TfIIA-L-RB 1586 CG5930-RB 395..1264 888..19 4350 100 Minus
TfIIA-L-RC 1440 CG5930-RC 249..1118 888..19 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27255088..27255395 887..580 1540 100 Minus
3R 32079331 3R 27255726..27255970 371..127 1225 100 Minus
3R 32079331 3R 27255456..27255663 579..372 1040 100 Minus
3R 32079331 3R 27256032..27256141 128..19 550 100 Minus
Blast to na_te.dros performed 2015-02-11 11:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 556..611 339..281 135 72.9 Minus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5723..5805 335..250 116 62.8 Minus

BS01086.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:23 Download gff for BS01086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5930-PA 203..1101 19..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:08 Download gff for BS01086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5930-PA 203..1101 19..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:14:39 Download gff for BS01086.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 375..1273 19..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:27 Download gff for BS01086.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 375..1273 19..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:27 Download gff for BS01086.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27255456..27255663 372..579 100 -> Minus
3R 27255726..27255970 127..371 100 -> Minus
3R 27256034..27256141 19..126 100   Minus
3R 27255088..27255395 580..887 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:14:39 Download gff for BS01086.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23080810..23081117 580..887 100 -> Minus
arm_3R 23081178..23081385 372..579 100 -> Minus
arm_3R 23081448..23081692 127..371 100 -> Minus
arm_3R 23081756..23081863 19..126 100   Minus

BS01086.5prime Sequence

761 bp (760 high quality bases) assembled on 2005-11-30

> BS01086.5prime
GAAGTTATCAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGT
ACCATGCCGTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTG
GACGAGGGCGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCG
CAACAAGTTGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCG
ATGGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGAGCCACAAG
GCAGCGAATGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATC
ACACCAACATATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTA
AGTCGTCCGCTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTG
CCCATCAAGCAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTAC
CTCGGCTGCAAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGAC
AGGGTTCCATTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCT
GTTAACATCACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCG
AGTGCTCACCATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGA
CCCAAATTCTGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCACC
ACGTTGGCCTCGTCTGTGCTTCAGCAGCACGTAAACGCAGCGCTAAGCAG
CGCCAATCACC

BS01086.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5930-PA 1101 TfIIA-L-RA 1..745 17..761 3725 100 Plus
CG5930-PB 1092 TfIIA-L-RB 223..736 248..761 2570 100 Plus
CG5930-PC 975 TfIIA-L-RC 106..619 248..761 2570 100 Plus
CG5930-PB 1092 TfIIA-L-RB 1..225 17..241 1125 100 Plus
CG5930-PC 975 TfIIA-L-RC 1..108 134..241 540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-RA 1595 CG5930-RA 173..917 17..761 3725 100 Plus
TfIIA-L-RB 1586 CG5930-RB 173..908 17..761 3580 98.8 Plus
TfIIA-L-RC 1440 CG5930-RC 50..762 40..761 3465 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27255088..27255395 249..556 1540 100 Plus
3R 32079331 3R 27255456..27255660 557..761 1025 100 Plus
3R 32079331 3R 27254527..27254728 40..241 1010 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:12:58 has no hits.

BS01086.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:24 Download gff for BS01086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5930-PA 1..745 17..761 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:10 Download gff for BS01086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5930-PA 1..745 17..761 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:34:32 Download gff for BS01086.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 167..917 11..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:47 Download gff for BS01086.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 167..917 11..761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:47 Download gff for BS01086.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27253596..27253625 11..40 93 -> Plus
3R 27254528..27254728 41..243 99 -> Plus
3R 27255084..27255395 244..556 98 -> Plus
3R 27255456..27255660 557..761 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:34:32 Download gff for BS01086.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23080250..23080450 41..243 99 -> Plus
arm_3R 23081178..23081382 557..761 100   Plus
arm_3R 23080806..23081117 244..556 98 -> Plus
arm_3R 23079318..23079347 11..40 93 -> Plus

BS01086.complete Sequence

1135 bp (1135 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634521

> BS01086.complete
GAAGTTATCAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGT
ACCATGCCGTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTG
GACGAGGGCGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCG
CAACAAGTTGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCG
ATGGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGAGCCACAAG
GCAGCGAATGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATC
ACACCAACATATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTA
AGTCGTCCGCTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTG
CCCATCAAGCAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTAC
CTCGGCTGCAAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGAC
AGGGTTCCATTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCT
GTTAACATCACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCG
AGTGCTCACCATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGA
CCCAAATTCTGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCACC
ACGTTGGCCTCGTCTGTGCTTCAGCAGCACGTAAACGCAGCGCTAAGCAG
CGCCAATCACCAGAAAACTCTTGCCGCCGCCAAGCAATTGGACGGTGCCC
TGGACTCCTCCGATGAGGATGAAAGCGAGGAGAGCGACGACAACATCGAC
AACGATGACGACGATGACCTAGACAAGGACGATGACGAGGATGCGGAGCA
CGAGGATGCTGCCGAGGAGGAGCCGCTCAACAGCGAAGACGATGTCACCG
ACGAAGACTCTGCCGAAATGTTTGACACAGATAACGTGATTGTTTGTCAG
TACGATAAGATCACCAGGTCGCGAAACAAATGGAAATTCTATCTCAAAGA
TGGCATCATGAACATGCGGGGCAAGGACTACGTGTTCCAGAAATCGAATG
GCGACGCCGAGTGGTAACGAAGCTTTCTAGACCAT

BS01086.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-RA 1101 CG5930-PA 1..1101 17..1117 5505 100 Plus
TfIIA-L-RB 1092 CG5930-PB 1..1092 17..1117 5335 99.2 Plus
TfIIA-L-RC 975 CG5930-PC 1..975 134..1117 4750 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-RA 1595 CG5930-RA 173..1273 17..1117 5505 100 Plus
TfIIA-L-RB 1586 CG5930-RB 173..1264 17..1117 5335 99.2 Plus
TfIIA-L-RC 1440 CG5930-RC 50..1118 40..1117 5220 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27255088..27255395 249..556 1540 100 Plus
3R 32079331 3R 27255726..27255970 765..1009 1225 100 Plus
3R 32079331 3R 27255456..27255663 557..764 1040 100 Plus
3R 32079331 3R 27254527..27254728 40..241 1010 100 Plus
3R 32079331 3R 27256032..27256141 1008..1117 550 100 Plus
Blast to na_te.dros performed 2014-11-27 13:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5723..5805 801..886 116 62.8 Plus

BS01086.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:19 Download gff for BS01086.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 1..1101 17..1117 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:31 Download gff for BS01086.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 167..1273 11..1117 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:02 Download gff for BS01086.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 173..1275 17..1119 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:19 Download gff for BS01086.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 167..1273 11..1117 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:38 Download gff for BS01086.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 173..1275 17..1119 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:38 Download gff for BS01086.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27255726..27255970 765..1009 100 -> Plus
3R 27256034..27256143 1010..1119 99   Plus
3R 27255084..27255395 244..556 98 -> Plus
3R 27255456..27255663 557..764 100 -> Plus
3R 27253602..27253625 17..40 100 -> Plus
3R 27254528..27254728 41..243 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:02 Download gff for BS01086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23080806..23081117 244..556 98 -> Plus
arm_3R 23081178..23081385 557..764 100 -> Plus
arm_3R 23081448..23081692 765..1009 100 -> Plus
arm_3R 23081756..23081865 1010..1119 99   Plus
arm_3R 23079324..23079347 17..40 100 -> Plus
arm_3R 23080250..23080450 41..243 99 -> Plus

BS01086.pep Sequence

Translation from 16 to 1116

> BS01086.pep
MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA
SKAVELSPDSGDGSHPPPIVANNPKSHKAANAKAKKAAAATAVTSHQHIG
GNSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASM
MQKQQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQ
VPASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQK
TLAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAE
EEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNM
RGKDYVFQKSNGDAEW*

BS01086.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-PA 366 CG5930-PA 1..366 1..366 1855 100 Plus
TfIIA-L-PB 363 CG5930-PB 1..363 1..366 1824 99.2 Plus
TfIIA-L-PC 324 CG5930-PC 1..324 40..366 1630 99.1 Plus