Clone Sequence Records
BS01086.3prime Sequence
916 bp (820 high quality bases) assembled on 2005-11-30
> BS01086.3prime
ATGGTCTAGAAAGCTTCGTTACCACTCGGCGTCGCCATTCGATTTCTGGA
ACACGTAGTCCTTGCCCCGCATGTTCATGATGCCATCTTTGAGATAGAAT
TTCCATTTGTTTCGCGACCTGGTGATCTTATCGTACTGACAAACAATCAC
GTTATCTGTGTCAAACATTTCGGCAGAGTCTTCGTCGGTGACATCGTCTT
CGCTGTTGAGCGGCTCCTCCTCGGCAGCATCCTCGTGCTCCGCATCCTCG
TCATCGTCCTTGTCTAGGTCATCGTCGTCATCGTTGTCGATGTTGTCGTC
GCTCTCCTCGCTTTCATCCTCATCGGAGGAGTCCAGGGCACCGTCCAATT
GCTTGGCGGCGGCAAGAGTTTTCTGGTGATTGGCGCTGCTTAGCGCTGCG
TTTACGTGCTGCTGAAGCACAGACGAGGCCAACGTGGTGGGCAAGGACAT
GATGGATGAAATCAGGTGGGCCGTCAGAATTTGGGTCAACTGATTCTCCT
GCAGCGCGGAGGCAGGCACTTGTATGGTGAGCACTCGAGATTCCGAACTG
GCAGAGCCGGCTGGCGATGGCAGCGTGATGTTAACAGGCATAATGCGATT
GGGGTCCAGCGTGGCCACAATTGGAATGGAACCCTGTCCACTGCTCGCCG
CCTGCTGCTGTTTCTGCATCATGCTTGCAGCCGAGGTAGGATGCAGTGGC
GGTGGATTCTGTGAGTTGACTTCCTGCTTGATGGGCACCAGCCCGTTCCT
TATGCCGCTGCCGGCGGCCATTCCAGCGGACGACTTAAGCCCCACCAGCG
AGGACATGGAGCTGTTGCCGCCGATATGTTGGTGTGATGTGACCGCGGTT
GCGGCGGCGGCCTTCTTGGCCTTGGCATTCGCTGCCTTGTGGCTCTTTGG
ATTTGTGCCACGATGG
BS01086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5930-PA | 1101 | TfIIA-L-RA | 217..1101 | 903..19 | 4425 | 100 | Minus |
CG5930-PC | 975 | TfIIA-L-RC | 106..975 | 888..19 | 4350 | 100 | Minus |
CG5930-PB | 1092 | TfIIA-L-RB | 223..1092 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-RA | 1595 | CG5930-RA | 375..1273 | 916..19 | 4440 | 99.7 | Minus |
TfIIA-L-RB | 1586 | CG5930-RB | 395..1264 | 888..19 | 4350 | 100 | Minus |
TfIIA-L-RC | 1440 | CG5930-RC | 249..1118 | 888..19 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27255088..27255395 | 887..580 | 1540 | 100 | Minus |
3R | 32079331 | 3R | 27255726..27255970 | 371..127 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 27255456..27255663 | 579..372 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 27256032..27256141 | 128..19 | 550 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 556..611 | 339..281 | 135 | 72.9 | Minus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5723..5805 | 335..250 | 116 | 62.8 | Minus |
BS01086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:23 Download gff for
BS01086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5930-PA | 203..1101 | 19..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:08 Download gff for
BS01086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5930-PA | 203..1101 | 19..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:14:39 Download gff for
BS01086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 375..1273 | 19..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:27 Download gff for
BS01086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 375..1273 | 19..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:27 Download gff for
BS01086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27255456..27255663 | 372..579 | 100 | -> | Minus |
3R | 27255726..27255970 | 127..371 | 100 | -> | Minus |
3R | 27256034..27256141 | 19..126 | 100 | | Minus |
3R | 27255088..27255395 | 580..887 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:14:39 Download gff for
BS01086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23080810..23081117 | 580..887 | 100 | -> | Minus |
arm_3R | 23081178..23081385 | 372..579 | 100 | -> | Minus |
arm_3R | 23081448..23081692 | 127..371 | 100 | -> | Minus |
arm_3R | 23081756..23081863 | 19..126 | 100 | | Minus |
BS01086.5prime Sequence
761 bp (760 high quality bases) assembled on 2005-11-30
> BS01086.5prime
GAAGTTATCAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGT
ACCATGCCGTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTG
GACGAGGGCGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCG
CAACAAGTTGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCG
ATGGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGAGCCACAAG
GCAGCGAATGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATC
ACACCAACATATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTA
AGTCGTCCGCTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTG
CCCATCAAGCAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTAC
CTCGGCTGCAAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGAC
AGGGTTCCATTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCT
GTTAACATCACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCG
AGTGCTCACCATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGA
CCCAAATTCTGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCACC
ACGTTGGCCTCGTCTGTGCTTCAGCAGCACGTAAACGCAGCGCTAAGCAG
CGCCAATCACC
BS01086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5930-PA | 1101 | TfIIA-L-RA | 1..745 | 17..761 | 3725 | 100 | Plus |
CG5930-PB | 1092 | TfIIA-L-RB | 223..736 | 248..761 | 2570 | 100 | Plus |
CG5930-PC | 975 | TfIIA-L-RC | 106..619 | 248..761 | 2570 | 100 | Plus |
CG5930-PB | 1092 | TfIIA-L-RB | 1..225 | 17..241 | 1125 | 100 | Plus |
CG5930-PC | 975 | TfIIA-L-RC | 1..108 | 134..241 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-RA | 1595 | CG5930-RA | 173..917 | 17..761 | 3725 | 100 | Plus |
TfIIA-L-RB | 1586 | CG5930-RB | 173..908 | 17..761 | 3580 | 98.8 | Plus |
TfIIA-L-RC | 1440 | CG5930-RC | 50..762 | 40..761 | 3465 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27255088..27255395 | 249..556 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 27255456..27255660 | 557..761 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 27254527..27254728 | 40..241 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:12:58 has no hits.
BS01086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:24 Download gff for
BS01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5930-PA | 1..745 | 17..761 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:10 Download gff for
BS01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5930-PA | 1..745 | 17..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:34:32 Download gff for
BS01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 167..917 | 11..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:47 Download gff for
BS01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 167..917 | 11..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:47 Download gff for
BS01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27253596..27253625 | 11..40 | 93 | -> | Plus |
3R | 27254528..27254728 | 41..243 | 99 | -> | Plus |
3R | 27255084..27255395 | 244..556 | 98 | -> | Plus |
3R | 27255456..27255660 | 557..761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:34:32 Download gff for
BS01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23080250..23080450 | 41..243 | 99 | -> | Plus |
arm_3R | 23081178..23081382 | 557..761 | 100 | | Plus |
arm_3R | 23080806..23081117 | 244..556 | 98 | -> | Plus |
arm_3R | 23079318..23079347 | 11..40 | 93 | -> | Plus |
BS01086.complete Sequence
1135 bp (1135 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634521
> BS01086.complete
GAAGTTATCAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGT
ACCATGCCGTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTG
GACGAGGGCGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCG
CAACAAGTTGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCG
ATGGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGAGCCACAAG
GCAGCGAATGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATC
ACACCAACATATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTA
AGTCGTCCGCTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTG
CCCATCAAGCAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTAC
CTCGGCTGCAAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGAC
AGGGTTCCATTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCT
GTTAACATCACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCG
AGTGCTCACCATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGA
CCCAAATTCTGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCACC
ACGTTGGCCTCGTCTGTGCTTCAGCAGCACGTAAACGCAGCGCTAAGCAG
CGCCAATCACCAGAAAACTCTTGCCGCCGCCAAGCAATTGGACGGTGCCC
TGGACTCCTCCGATGAGGATGAAAGCGAGGAGAGCGACGACAACATCGAC
AACGATGACGACGATGACCTAGACAAGGACGATGACGAGGATGCGGAGCA
CGAGGATGCTGCCGAGGAGGAGCCGCTCAACAGCGAAGACGATGTCACCG
ACGAAGACTCTGCCGAAATGTTTGACACAGATAACGTGATTGTTTGTCAG
TACGATAAGATCACCAGGTCGCGAAACAAATGGAAATTCTATCTCAAAGA
TGGCATCATGAACATGCGGGGCAAGGACTACGTGTTCCAGAAATCGAATG
GCGACGCCGAGTGGTAACGAAGCTTTCTAGACCAT
BS01086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-RA | 1101 | CG5930-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
TfIIA-L-RB | 1092 | CG5930-PB | 1..1092 | 17..1117 | 5335 | 99.2 | Plus |
TfIIA-L-RC | 975 | CG5930-PC | 1..975 | 134..1117 | 4750 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-RA | 1595 | CG5930-RA | 173..1273 | 17..1117 | 5505 | 100 | Plus |
TfIIA-L-RB | 1586 | CG5930-RB | 173..1264 | 17..1117 | 5335 | 99.2 | Plus |
TfIIA-L-RC | 1440 | CG5930-RC | 50..1118 | 40..1117 | 5220 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27255088..27255395 | 249..556 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 27255726..27255970 | 765..1009 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 27255456..27255663 | 557..764 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 27254527..27254728 | 40..241 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 27256032..27256141 | 1008..1117 | 550 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5723..5805 | 801..886 | 116 | 62.8 | Plus |
BS01086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:19 Download gff for
BS01086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 1..1101 | 17..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:31 Download gff for
BS01086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 167..1273 | 11..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:02 Download gff for
BS01086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 173..1275 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:19 Download gff for
BS01086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 167..1273 | 11..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:38 Download gff for
BS01086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 173..1275 | 17..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:38 Download gff for
BS01086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27255726..27255970 | 765..1009 | 100 | -> | Plus |
3R | 27256034..27256143 | 1010..1119 | 99 | | Plus |
3R | 27255084..27255395 | 244..556 | 98 | -> | Plus |
3R | 27255456..27255663 | 557..764 | 100 | -> | Plus |
3R | 27253602..27253625 | 17..40 | 100 | -> | Plus |
3R | 27254528..27254728 | 41..243 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:02 Download gff for
BS01086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23080806..23081117 | 244..556 | 98 | -> | Plus |
arm_3R | 23081178..23081385 | 557..764 | 100 | -> | Plus |
arm_3R | 23081448..23081692 | 765..1009 | 100 | -> | Plus |
arm_3R | 23081756..23081865 | 1010..1119 | 99 | | Plus |
arm_3R | 23079324..23079347 | 17..40 | 100 | -> | Plus |
arm_3R | 23080250..23080450 | 41..243 | 99 | -> | Plus |
BS01086.pep Sequence
Translation from 16 to 1116
> BS01086.pep
MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA
SKAVELSPDSGDGSHPPPIVANNPKSHKAANAKAKKAAAATAVTSHQHIG
GNSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASM
MQKQQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQ
VPASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQK
TLAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAE
EEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNM
RGKDYVFQKSNGDAEW*
BS01086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-PA | 366 | CG5930-PA | 1..366 | 1..366 | 1855 | 100 | Plus |
TfIIA-L-PB | 363 | CG5930-PB | 1..363 | 1..366 | 1824 | 99.2 | Plus |
TfIIA-L-PC | 324 | CG5930-PC | 1..324 | 40..366 | 1630 | 99.1 | Plus |