Clone Sequence Records
BS01088.3prime Sequence
930 bp (774 high quality bases) assembled on 2005-11-30
> BS01088.3prime
ATGGTCTAGAAAGCTTCGTCACCAACCAGTTGTGGTATTGGCCAGTCGTC
GCATTCTGCGCGTGTTGCGGTCCTGGTCGCGGATTTTCTTCTCCATTTCG
GCGTCGGTAAGCGTCTCTAGGAATGGCGCCCATGCGTCAGCGTCGCTGGG
ATTCCGGAAGGGCACATCAATCGTTGATAGAGGGGCCTCGCTGAAGGCGT
ACGTTCGACAGTGCCACGATAGCTGACCCCTAATGCTGTAGGCAATGGCC
GTAACAAACTCTCCTCCCAATCCCAATTCCGCACAGAGTTTAATGGCAAA
CTCCTCGGGGTTGTTGTTCTTCTCGGACATGTCCCACTCGACCTGGTCGA
CGAGCGAGGTGTTGCCCACGTGAATGTTCAGCTTAACAATGACCCGCTGG
TCGCAGGTCTCCTCGAGGATGGGGGGATCGTTGGGAAAGGCTTCGATCTG
CTGTCGGATGGCCTGTGCAATAGCCGGCACAAAGGGCAGGGGATTGAGGT
CCAGGTCGTCGCACAGCACCTCGGCAAACTGCTCCGGAGTAATCATGCTC
TCGTTCTTGTTCCACGTGAAGGTGTCGCGCAGCTTTTGACCCTCTAGCTC
CATGTCCAGTCGAATGGGCACCAGGCACTCCTTCTGCGCCGCATTCTCCA
GGCTAGCCGTGGGATCCGTGTCGTCGAAACACATCGGGAATGTGCGAACC
TTCTTCGTGTGCACTCGGTTTCGGTTGATTGGCGTGGCCTGTGGCACTGC
GTCCAGGTGGCTGGAGTTCGGCATCGTGGGCACATACTGTGGCTGCTTCT
TTGACTTGCTCTCCCGCGGCACTGGCGTATCGGAAGTGTTCACGGAGACG
GCGCGATACTTTTCATCGTTTGCGGCCATGATATCATCCACCTCTACGGC
GCGGAGCAGCGATACAGAGCTGGCTAAGAT
BS01088.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1064-PA | 1113 | Snr1-RA | 202..1113 | 930..19 | 4510 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1335 | CG1064-RA | 335..1246 | 930..19 | 4530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5471825..5472665 | 859..19 | 4205 | 100 | Minus |
| 3R | 32079331 | 3R | 5471260..5471333 | 930..857 | 340 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:11:26 has no hits.
BS01088.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:27 Download gff for
BS01088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-PA | 202..1113 | 19..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:13 Download gff for
BS01088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1064-PA | 202..1113 | 19..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:41:10 Download gff for
BS01088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 335..1246 | 19..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:51:46 Download gff for
BS01088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 335..1246 | 19..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:51:46 Download gff for
BS01088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5471825..5472665 | 19..859 | 100 | | Minus |
| 3R | 5471260..5471330 | 860..930 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:41:10 Download gff for
BS01088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1296982..1297052 | 860..930 | 97 | -> | Minus |
| arm_3R | 1297547..1298387 | 19..859 | 100 | | Minus |
BS01088.5prime Sequence
811 bp (774 high quality bases) assembled on 2005-11-30
> BS01088.5prime
GAAGTTATCAGTCGACATGGCACTGCAGACATACGGGGACAAGCCGGTGG
CCTTCCAGCTGGAGGAGGGCGGCGAGTACTACTACGTGGGCTCGGAAGTG
GGCAACTACATGCGCCACTTCCGCGGCATTCTGTACAAGAAGTACCCGGG
AATGACCCGCATCGTCCTGTCCAACGAGGAGCGCAAGCGGCTGGCTGAGT
CCGGCCTCAGCTCCCACATCTTAGCCAGCTCTGTATCGCTGCTCCGCGCC
GTAGAGGTGGATGATATCATGGCCGGCAACGATGAAAAGTATCGCGCCGT
CTCCGTGAACACTTCCGATACGCCAGTGCCGCGGGAGAGCAAGTCAAAGA
AGCAGCCACAGTATGTGCCCACGATGCCGAACTCCAGCCACCTGGACGCA
GTGCCACAGGCCACGCCAATCAACCGAAACCGAGTGCACACGAAGAAGGT
TCGCACATTCCCGATGTGTTTCGACGACACGGATCCCACGGCTAGCCTGG
AGAATGCGGCGCAGAAGGAGTGCCTGGTGCCCATTCGACTGGACATGGAG
CTAGAGGGTCAAAAGCTGCGCGACACCTTCACGTGGAACAAGAACGAGAG
CATGATTACTCCGGAGCAGTTTGCCGAGGTGCTGTGCGACGACCTGGACC
TCAATCCCCTGCCCTTTGTGCCGGCTATTGCACAGGCCATCCGACAGCAG
ATCGAAGCCTTTCCCAACGATCCCCCCATCCCTCGAGAGACCTGCGACCA
GCGGGTCATTGTTAAGCTGAACATTCACGTGGGCAACACCTCGCTCGTCG
ACCCAGTCGAG
BS01088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1064-PA | 1113 | Snr1-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
| CG1064-PA | 1113 | Snr1-RA | 721..787 | 737..803 | 335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1335 | CG1064-RA | 132..928 | 15..811 | 3910 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5471825..5472347 | 289..811 | 2510 | 98.7 | Plus |
| 3R | 32079331 | 3R | 5471057..5471333 | 15..291 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:33:23 has no hits.
BS01088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:29 Download gff for
BS01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-PA | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:14 Download gff for
BS01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1064-PA | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:50:02 Download gff for
BS01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 124..928 | 6..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:12 Download gff for
BS01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 124..928 | 6..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:12 Download gff for
BS01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5471049..5471330 | 6..288 | 98 | -> | Plus |
| 3R | 5471825..5472347 | 289..811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:50:02 Download gff for
BS01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1296771..1297052 | 6..288 | 98 | -> | Plus |
| arm_3R | 1297547..1298069 | 289..811 | 99 | | Plus |
BS01088.complete Sequence
1147 bp (1147 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634522
> BS01088.complete
GAAGTTATCAGTCGACATGGCACTGCAGACATACGGGGACAAGCCGGTGG
CCTTCCAGCTGGAGGAGGGCGGCGAGTACTACTACGTGGGCTCGGAAGTG
GGCAACTACATGCGCCACTTCCGCGGCATTCTGTACAAGAAGTACCCGGG
AATGACCCGCATCGTCCTGTCCAACGAGGAGCGCAAGCGGCTGGCTGAGT
CCGGCCTCAGCTCCCACATCTTAGCCAGCTCTGTATCGCTGCTCCGCGCC
GTAGAGGTGGATGATATCATGGCCGGCAACGATGAAAAGTATCGCGCCGT
CTCCGTGAACACTTCCGATACGCCAGTGCCGCGGGAGAGCAAGTCAAAGA
AGCAGCCACAGTATGTGCCCACGATGCCGAACTCCAGCCACCTGGACGCA
GTGCCACAGGCCACGCCAATCAACCGAAACCGAGTGCACACGAAGAAGGT
TCGCACATTCCCGATGTGTTTCGACGACACGGATCCCACGGCTAGCCTGG
AGAATGCGGCGCAGAAGGAGTGCCTGGTGCCCATTCGACTGGACATGGAG
CTAGAGGGTCAAAAGCTGCGCGACACCTTCACGTGGAACAAGAACGAGAG
CATGATTACTCCGGAGCAGTTTGCCGAGGTGCTGTGCGACGACCTGGACC
TCAATCCCCTGCCCTTTGTGCCGGCTATTGCACAGGCCATCCGACAGCAG
ATCGAAGCCTTTCCCAACGATCCCCCCATCCTCGAGGAGACCTGCGACCA
GCGGGTCATTGTTAAGCTGAACATTCACGTGGGCAACACCTCGCTCGTCG
ACCAGGTCGAGTGGGACATGTCCGAGAAGAACAACAACCCCGAGGAGTTT
GCCATTAAACTCTGTGCGGAATTGGGATTGGGAGGAGAGTTTGTTACGGC
CATTGCCTACAGCATTAGGGGTCAGCTATCGTGGCACTGTCGAACGTACG
CCTTCAGCGAGGCCCCTCTATCAACGATTGATGTGCCCTTCCGGAATCCC
AGCGACGCTGACGCATGGGCGCCATTCCTAGAGACGCTTACCGACGCCGA
AATGGAGAAGAAAATCCGCGACCAGGACCGCAACACGCGCAGAATGCGAC
GACTGGCCAATACCACAACTGGTTGGTGACGAAGCTTTCTAGACCAT
BS01088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1113 | CG1064-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1335 | CG1064-RA | 132..1246 | 15..1129 | 5575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5471825..5472665 | 289..1129 | 4205 | 100 | Plus |
| 3R | 32079331 | 3R | 5471057..5471333 | 15..291 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:28:27 has no hits.
BS01088.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:20 Download gff for
BS01088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 1..1113 | 17..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:33 Download gff for
BS01088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 133..1255 | 6..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:05 Download gff for
BS01088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 134..1246 | 17..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:20 Download gff for
BS01088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 133..1255 | 6..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:25 Download gff for
BS01088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 134..1246 | 17..1131 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:25 Download gff for
BS01088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5471059..5471330 | 17..288 | 100 | -> | Plus |
| 3R | 5471825..5472665 | 289..1131 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:05 Download gff for
BS01088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1296781..1297052 | 17..288 | 100 | -> | Plus |
| arm_3R | 1297547..1298387 | 289..1131 | 99 | | Plus |
BS01088.pep Sequence
Translation from 16 to 1128
> BS01088.pep
MALQTYGDKPVAFQLEEGGEYYYVGSEVGNYMRHFRGILYKKYPGMTRIV
LSNEERKRLAESGLSSHILASSVSLLRAVEVDDIMAGNDEKYRAVSVNTS
DTPVPRESKSKKQPQYVPTMPNSSHLDAVPQATPINRNRVHTKKVRTFPM
CFDDTDPTASLENAAQKECLVPIRLDMELEGQKLRDTFTWNKNESMITPE
QFAEVLCDDLDLNPLPFVPAIAQAIRQQIEAFPNDPPILEETCDQRVIVK
LNIHVGNTSLVDQVEWDMSEKNNNPEEFAIKLCAELGLGGEFVTAIAYSI
RGQLSWHCRTYAFSEAPLSTIDVPFRNPSDADAWAPFLETLTDAEMEKKI
RDQDRNTRRMRRLANTTTGW*
BS01088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-PA | 370 | CG1064-PA | 1..370 | 1..370 | 1942 | 100 | Plus |
