Clone BS01089 Report

Search the DGRC for BS01089

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptE2f2-RA
Protein status:BS01089.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01089.3prime Sequence

770 bp (769 high quality bases) assembled on 2005-11-30

> BS01089.3prime
ATGGTCTAGAAAGCTTCGTTAGGAGCACTGAACATCAAACAGCTCGCAAA
TACCTTCGTCGCTTTTTAACGCAAAGTTGAAGTCTTCCTGCGGAGGATTC
AGCTGCAGCAGCGGCGGGTTTTCTAGATTCGGATCATCGGGATAAAATCG
CCGCAGCGAATGACCGGACAGATAATTTTGGAAGATTATCTTGGCCGTCA
GCTCGTTCTCCAAAAGTTTCATCTCATCTTTCATCCCGGGATTGCACGAG
TAACCGTGCTCGTCGGTGATCACGTTCCCCGCGCATGCTGGAGCGTTACC
ATCCTCGCTGGAGTGCGACGACGTCGAGGGTGAGGGCGTGTCCAGACGGT
GATAGTCAAAGAACCCATCCACATCGTGCGGATTTGTAGTACTCTTTCCT
TGGTTCGTCACCAGGCGAATGTCAATTGCGCTGCCATTGTCCAGCGACAC
GGCCAGCTCGTAATGATTACGCTTGATATCTACTTCCTCGTCATAATTAG
GTATTGTGAATACGGAATCATCTCCAAAGATGTCCAGCAGATCATCACGT
GTCACATATGCATACGACCTATTCGAGGGATCCTGCATAACGTAGCGCAG
ATTGCGCTGTGCATACTCCAGTTGCCTGTCTAGGTCATCCTCCAACATTT
TCAAATGATTAGTCCGGCTACGTGCCAGGTCGTAGTTCTCTTGGTCCTTG
GCATTGTTAAAGCCCCCTCCGCGCCAGCGCACTAGGGAGCAGTGTCTGCC
CTTATCAATTAGTCCAATGC

BS01089.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1071-PA 1113 E2f2-RA 362..1113 770..19 3760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
E2f2-RB 2002 CG1071-RB 1068..1820 770..18 3765 100 Minus
E2f2-RA 1485 CG1071-RA 551..1303 770..18 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21154646..21154985 123..462 1700 100 Plus
2L 23513712 2L 21155107..21155366 463..722 1300 100 Plus
2L 23513712 2L 21154475..21154581 18..124 535 100 Plus
2L 23513712 2L 21155572..21155620 722..770 245 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:28:02 has no hits.

BS01089.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:30 Download gff for BS01089.3prime
Subject Subject Range Query Range Percent Splice Strand
E2f2-PA 362..1113 19..770 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:15 Download gff for BS01089.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1071-PA 362..1113 19..770 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:14:06 Download gff for BS01089.3prime
Subject Subject Range Query Range Percent Splice Strand
E2f2-RA 551..1303 18..770 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:41 Download gff for BS01089.3prime
Subject Subject Range Query Range Percent Splice Strand
E2f2-RA 551..1303 18..770 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:41 Download gff for BS01089.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21154475..21154579 18..122 100 <- Plus
2L 21154646..21154985 123..462 100 <- Plus
2L 21155107..21155365 463..721 100 <- Plus
2L 21155572..21155620 722..770 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:14:06 Download gff for BS01089.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21155572..21155620 722..770 100   Plus
arm_2L 21154475..21154579 18..122 100 <- Plus
arm_2L 21154646..21154985 123..462 100 <- Plus
arm_2L 21155107..21155365 463..721 100 <- Plus

BS01089.5prime Sequence

951 bp (747 high quality bases) assembled on 2005-11-30

> BS01089.5prime
GAAGTTATCAGTCGACATGTACAAGCGCAAAACCGCGAGTATTGTTAAAA
GAGACAGCTCCGCAGCGGGCACCACCTCCTCGGCTATGATGATGAAGGTG
GATTCGGCTGAGACTTCGGTCCGGTCGCAGAGCTACGAGTCTACACCCGT
TAGCATGGACACATCACCGGATCCTCCAACGCCAATCAAGTCTCCGTCGA
ATTCACAATCGCAATCGCAGCCTGGACAACAGCGCTCCGTGGGCTCACTG
GTCCTGCTCACACAGAAGTTTGTGGATCTCGTGAAGGCCAACGAAGGATC
CATCGACCTGAAAGCGGCAACCAAAATCTTGGACGTACAGAAGCGCCGAA
TATACGATATTACCAATGTTTTAGAGGGCATTGGACTAATTGATAAGGGC
AGACACTGCTCCCTAGTGCGCTGGCGCGGAGGGGGCTTTAACAATGCCAA
GGACCAAGAGAACTACGACCTGGCACGTAGCCGGACTAATCATTTGAAAA
TGTTGGAGGATGACCTAGACAGGCAACTGGAGTATGCACAGCGCAATCTG
CGCTACGTTATGCAGGATCCCTCGAATAGGTCGTATGCATATGTGACACG
TGATGATCTGCTGGACATCTTTGGAGATGATTCCGTATTCACAATACCTA
ATTATGACGAGGAAGTAGATATCAAGCGTAATCATTACGAGCTGGCCGTG
TCGCTGGACAATGGCAGCGCAATTGACATTCGCCTGGTGACGAACCAAGG
AAAGAGTACTATCAATCCGCACGATGTGGATGGGTTCTTTGACTATCNAC
GTCTGGACACGCCCTCACCCTCGACGTCGTCGCACTCCAGCGAGGATGGT
AACGCTCCAGCATGCGCGGGGAACGTGATCACCGACGAGCACGGTTACTC
GTGCAATCCCGGGATGAAAGATGAGATGAAACTTTTTGGAGAACGAGCTG
A

BS01089.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1071-PA 1113 E2f2-RA 1..920 17..936 4506 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
E2f2-RB 2002 CG1071-RB 706..1640 16..951 4599 99.5 Plus
E2f2-RA 1485 CG1071-RA 189..1123 16..951 4599 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21155743..21156044 317..16 1510 100 Minus
2L 23513712 2L 21155107..21155366 685..426 1300 100 Minus
2L 23513712 2L 21154721..21154985 951..686 1224 98.1 Minus
2L 23513712 2L 21155572..21155682 426..316 555 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:00:14 has no hits.

BS01089.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:31 Download gff for BS01089.5prime
Subject Subject Range Query Range Percent Splice Strand
E2f2-PA 1..933 17..950 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:17 Download gff for BS01089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1071-PA 1..933 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:34:36 Download gff for BS01089.5prime
Subject Subject Range Query Range Percent Splice Strand
E2f2-RA 189..1122 16..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:22 Download gff for BS01089.5prime
Subject Subject Range Query Range Percent Splice Strand
E2f2-RA 189..1122 16..950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:22 Download gff for BS01089.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21154722..21154985 686..950 98 <- Minus
2L 21155107..21155365 427..685 100 <- Minus
2L 21155572..21155681 317..426 100 <- Minus
2L 21155744..21156044 16..316 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:34:36 Download gff for BS01089.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21154722..21154985 686..950 98 <- Minus
arm_2L 21155107..21155365 427..685 100 <- Minus
arm_2L 21155572..21155681 317..426 100 <- Minus
arm_2L 21155744..21156044 16..316 100   Minus

BS01089.complete Sequence

1147 bp (1147 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634523

> BS01089.complete
GAAGTTATCAGTCGACATGTACAAGCGCAAAACCGCGAGTATTGTTAAAA
GAGACAGCTCCGCAGCGGGCACCACCTCCTCGGCTATGATGATGAAGGTG
GATTCGGCTGAGACTTCGGTCCGGTCGCAGAGCTACGAGTCTACACCCGT
TAGCATGGACACATCACCGGATCCTCCAACGCCAATCAAGTCTCCGTCGA
ATTCACAATCGCAATCGCAGCCTGGACAACAGCGCTCCGTGGGCTCACTG
GTCCTGCTCACACAGAAGTTTGTGGATCTCGTGAAGGCCAACGAAGGATC
CATCGACCTGAAAGCGGCAACCAAAATCTTGGACGTACAGAAGCGCCGAA
TATACGATATTACCAATGTTTTAGAGGGCATTGGACTAATTGATAAGGGC
AGACACTGCTCCCTAGTGCGCTGGCGCGGAGGGGGCTTTAACAATGCCAA
GGACCAAGAGAACTACGACCTGGCACGTAGCCGGACTAATCATTTGAAAA
TGTTGGAGGATGACCTAGACAGGCAACTGGAGTATGCACAGCGCAATCTG
CGCTACGTTATGCAGGATCCCTCGAATAGGTCGTATGCATATGTGACACG
TGATGATCTGCTGGACATCTTTGGAGATGATTCCGTATTCACAATACCTA
ATTATGACGAGGAAGTAGATATCAAGCGTAATCATTACGAGCTGGCCGTG
TCGCTGGACAATGGCAGCGCAATTGACATTCGCCTGGTGACGAACCAAGG
AAAGAGTACTACAAATCCGCACGATGTGGATGGGTTCTTTGACTATCACC
GTCTGGACACGCCCTCACCCTCGACGTCGTCGCACTCCAGCGAGGATGGT
AACGCTCCAGCATGCGCGGGGAACGTGATCACCGACGAGCACGGTTACTC
GTGCAATCCCGGGATGAAAGATGAGATGAAACTTTTGGAGAACGAGCTGA
CGGCCAAGATAATCTTCCAAAATTATCTGTCCGGTCATTCGCTGCGGCGA
TTTTATCCCGATGATCCGAATCTAGAAAACCCGCCGCTGCTGCAGCTGAA
TCCTCCGCAGGAAGACTTCAACTTTGCGTTAAAAAGCGACGAAGGTATTT
GCGAGCTGTTTGATGTTCAGTGCTCCTAACGAAGCTTTCTAGACCAT

BS01089.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
E2f2-RB 1113 CG1071-PB 1..1113 17..1129 5565 100 Plus
E2f2-RA 1113 CG1071-PA 1..1113 17..1129 5565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
E2f2-RB 2002 CG1071-RB 706..1820 16..1130 5575 100 Plus
E2f2-RA 1485 CG1071-RA 189..1303 16..1130 5575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21154646..21154985 1025..686 1700 100 Minus
2L 23513712 2L 21155743..21156044 317..16 1510 100 Minus
2L 23513712 2L 21155107..21155366 685..426 1300 100 Minus
2L 23513712 2L 21155572..21155682 426..316 555 100 Minus
2L 23513712 2L 21154475..21154581 1130..1024 535 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:10:05 has no hits.

BS01089.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:21 Download gff for BS01089.complete
Subject Subject Range Query Range Percent Splice Strand
E2f2-RA 1..1113 17..1129 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:34 Download gff for BS01089.complete
Subject Subject Range Query Range Percent Splice Strand
E2f2-RA 202..1316 16..1130 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:26 Download gff for BS01089.complete
Subject Subject Range Query Range Percent Splice Strand
E2f2-RA 190..1303 17..1131 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:21 Download gff for BS01089.complete
Subject Subject Range Query Range Percent Splice Strand
E2f2-RA 202..1316 16..1130 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:56 Download gff for BS01089.complete
Subject Subject Range Query Range Percent Splice Strand
E2f2-RA 190..1303 17..1131 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:56 Download gff for BS01089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21155572..21155681 317..426 100 <- Minus
2L 21155744..21156043 17..316 100   Minus
2L 21154473..21154579 1026..1131 99 <- Minus
2L 21154646..21154985 686..1025 100 <- Minus
2L 21155107..21155365 427..685 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:26 Download gff for BS01089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21155572..21155681 317..426 100 <- Minus
arm_2L 21154473..21154579 1026..1131 99 <- Minus
arm_2L 21154646..21154985 686..1025 100 <- Minus
arm_2L 21155107..21155365 427..685 100 <- Minus
arm_2L 21155744..21156043 17..316 100   Minus

BS01089.pep Sequence

Translation from 16 to 1128

> BS01089.pep
MYKRKTASIVKRDSSAAGTTSSAMMMKVDSAETSVRSQSYESTPVSMDTS
PDPPTPIKSPSNSQSQSQPGQQRSVGSLVLLTQKFVDLVKANEGSIDLKA
ATKILDVQKRRIYDITNVLEGIGLIDKGRHCSLVRWRGGGFNNAKDQENY
DLARSRTNHLKMLEDDLDRQLEYAQRNLRYVMQDPSNRSYAYVTRDDLLD
IFGDDSVFTIPNYDEEVDIKRNHYELAVSLDNGSAIDIRLVTNQGKSTTN
PHDVDGFFDYHRLDTPSPSTSSHSSEDGNAPACAGNVITDEHGYSCNPGM
KDEMKLLENELTAKIIFQNYLSGHSLRRFYPDDPNLENPPLLQLNPPQED
FNFALKSDEGICELFDVQCS*

BS01089.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
E2f2-PB 370 CG1071-PB 1..370 1..370 1931 100 Plus
E2f2-PA 370 CG1071-PA 1..370 1..370 1931 100 Plus
E2f1-PF 805 CG6376-PF 229..425 44..240 222 34.3 Plus
E2f1-PA 805 CG6376-PA 229..425 44..240 222 34.3 Plus
E2f1-PC 805 CG6376-PC 229..425 44..240 222 34.3 Plus