Clone BS01092 Report

Search the DGRC for BS01092

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG1792-RA
Protein status:BS01092.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01092.3prime Sequence

861 bp (789 high quality bases) assembled on 2005-11-30

> BS01092.3prime
ATGGTCTAGAAAGCTTCGCTAAGATCCACTTTTTCCTAGTAAAGCCTCAT
CCTTAGCCCCTGTCTGCATGCCGTTACTGGCCTTCACGTCCAGTTCCACA
GGATTGTCCAGTGCCGCCTGGGCGCTTGAAGTGTGGGCGTGACCTTTTGA
GCGATAGTGGGAGGTCAGGTGGGAGCGGCGAACGAAGGAGACTTGGCAGG
AGTCGCAGTGGAACGCTCGCACTCCGGTGTGACTCAGCATGTGCGTGCGG
AGTTTTCCGCTCATGGCAAAGCTTTTATTGCATTCCTTGCACGTGAAGGG
CTTGACATTCGTGTGGCGCATGCGTTCGTGCTGGATGCGTCCGCTGGCGT
TGCTGTAGGTTGCCTCGCAGTAGCGACACTGAAACAAAGCATTCCCCGCA
TGCAGTTCTTGGTGGCGCCGCAGAAGCGTAGCAGTGTAGAACTGCTGGGA
GCACTGGTCACAGGCAAAGCTCTTTACGCCGGTGTGTCGGAGGAGGTGCA
ACTTGAAGTTGCTGGGGCAGGTGAAGTGCCGGCCACACTGCTCGCATATG
CAATCCCGCTTGCGTCGCTCCCGCTTTAGGGCCACCACTTCGTCCTCGGT
GAGTCTGCTCCACTGGGTGCGCGTGGCCTGGCTATTGTCCGCAAACTTAA
CGGAGGTAAAGACTGTGGGCGTGGTCTTTGTACTTCTGCGGAGCTTCTTC
TCCTGCGCAGGAACCTTCACTTGGGGCTGCTCGTTCTGCTCACATATTTC
GTACGGCTCTTCCGTCTCTTCCAGCAGGTGTTCCTCGGGTAGAAGGTCTA
TAACCTCGATCTCGGTGACCTCTTCAGCGTACTGAATCTCCTTCTCCACA
CCAACTGCGAA

BS01092.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1792-PA 1119 CG1792-RA 277..1119 861..19 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1792-RA 1344 CG1792-RA 376..1218 861..19 4215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31616731..31617273 861..319 2715 100 Minus
3R 32079331 3R 31617522..31617711 208..19 950 100 Minus
3R 32079331 3R 31617349..31617459 319..209 555 100 Minus
Blast to na_te.dros performed on 2015-02-03 14:17:04 has no hits.

BS01092.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:36 Download gff for BS01092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1792-PA 279..1119 19..859 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:27 Download gff for BS01092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1792-PA 279..1119 19..859 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:08:55 Download gff for BS01092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1792-RA 376..1220 16..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:56:03 Download gff for BS01092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1792-RA 376..1220 16..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:56:03 Download gff for BS01092.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31616731..31617272 320..861 100 -> Minus
3R 31617349..31617459 209..319 100 -> Minus
3R 31617522..31617713 16..208 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:08:55 Download gff for BS01092.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27442453..27442994 320..861 100 -> Minus
arm_3R 27443071..27443181 209..319 100 -> Minus
arm_3R 27443244..27443435 16..208 99   Minus

BS01092.5prime Sequence

799 bp (676 high quality bases) assembled on 2005-11-30

> BS01092.5prime
GAAGTTATCAGTCGACATGCCGAATCGTAATTGCCGGACTTGCGGCCTGT
TCATTTTCTGTTCGACGCCCAGTAACCTCTTCGAGGAGCCCAATTCCGTA
ATGCTGCACCAGATCGAGGTTCTTACTGGTTTGTTTTTGCTCGGCGGACC
CGGGAACGAGCTGCCCCCCTTTATTTGCTCACCCTGCGAATTGGACCTGC
AGACGGCGATTGCTTTCCGGGAACGTGTGATTCGAACCCAAAAAACGCTG
CAGGAAAGTCCCAACCTGGGGAACGCGGAATTGATCGAATCCTTCGCAGT
TGGTGTGGAGAAGGAGATTCAGTACGCTGAAGAGGTCACCGAGATCGAGG
TTATAGACCTTCTACCCGAGGAACACCTGCTGGAAGAGACGGAAGAGCCG
TACGAAATATGTGAGCAGAACGAGCAGCCCCAAGTGAAGGTTCCTGCGCA
GGAGAAGAAGCTCCGCAGAAGTACAAAGACCACGCCCACAGTCTTTACCT
CCGTTAAGTTTGCGGACAATAGCCAGGCCACGCGCACCCAGTGGAGCAGA
CTCACCGAGGACGAAGTGGTGGCCCTAAAGCGGGAGCGACGCAAGCGGGA
TTGCATATGCGAGCAGTGTGGCCGGCACTTCACCTGCCCCAGCAACTTCA
AGTTGCACCTCCTCCGACACACCGGCGTAAAGAGCTTTGCCTGTGACCAG
TGCTCCCAGCAGTTCTACACTGCTACGCTTCTGCGGCGCCACCAAGAACT
GCATGCGGGGAATGCTTTGTTTCAGTGTCGCTACTGCGAGGGCACCTAC

BS01092.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1792-PA 1119 CG1792-RA 1..775 17..791 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1792-RA 1344 CG1792-RA 100..882 17..799 3885 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31616575..31617237 137..799 3285 99.7 Plus
3R 32079331 3R 31616402..31616521 17..136 600 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:00:29 has no hits.

BS01092.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:37 Download gff for BS01092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1792-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:28 Download gff for BS01092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1792-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:55:31 Download gff for BS01092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1792-RA 100..882 17..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:37:30 Download gff for BS01092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1792-RA 100..882 17..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:37:30 Download gff for BS01092.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31616402..31616521 17..136 100 -> Plus
3R 31616575..31617237 137..799 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:55:31 Download gff for BS01092.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27442124..27442243 17..136 100 -> Plus
arm_3R 27442297..27442959 137..799 99   Plus

BS01092.complete Sequence

1153 bp (1153 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634524

> BS01092.complete
GAAGTTATCAGTCGACATGCCGAATCGTAATTGCCGGACTTGCGGCCTGT
TCATTTTCTGTTCGACGCCCAGTAACCTCTTCGAGGAGCCCAATTCCGTA
ATGCTGCACCAGATCGAGGTTCTTACTGGTTTGTTTTTGCTCGGCGGACC
CGGGAACGAGCTGCCCCCCTTTATTTGCTCACCCTGCGAATTGGACCTGC
AGACGGCGATTGCTTTCCGGGAACGTGTGATTCGAACCCAAAAAACGCTG
CAGGAAAGTCCCAACCTGGGGAACGCGGAATTGATCGAATCCTTCGCAGT
TGGTGTGGAGAAGGAGATTCAGTACGCTGAAGAGGTCACCGAGATCGAGG
TTATAGACCTTCTACCCGAGGAACACCTGCTGGAAGAGACGGAAGAGCCG
TACGAAATATGTGAGCAGAACGAGCAGCCCCAAGTGAAGGTTCCTGCGCA
GGAGAAGAAGCTCCGCAGAAGTACAAAGACCACGCCCACAGTCTTTACCT
CCGTTAAGTTTGCGGACAATAGCCAGGCCACGCGCACCCAGTGGAGCAGA
CTCACCGAGGACGAAGTGGTGGCCCTAAAGCGGGAGCGACGCAAGCGGGA
TTGCATATGCGAGCAGTGTGGCCGGCACTTCACCTGCCCCAGCAACTTCA
AGTTGCACCTCCTCCGACACACCGGCGTAAAGAGCTTTGCCTGTGACCAG
TGCTCCCAGCAGTTCTACACTGCTACGCTTCTGCGGCGCCACCAAGAACT
GCATGCGGGGAATGCTTTGTTTCAGTGTCGCTACTGCGAGGCAACCTACA
GCAACGCCAGCGGACGCATCCAGCACGAACGCATGCGCCACACGAATGTC
AAGCCCTTCACGTGCAAGGAATGCAATAAAAGCTTTGCCATGAGCGGAAA
ACTCCGCACGCACATGCTGAGTCACACCGGAGTGCGAGCGTTCCACTGCG
ACTCCTGCCAAGTCTCCTTCGTTCGCCGCTCCCACCTGACCTCCCACTAT
CGCTCAAAAGGTCACGCCCACACTTCAAGCGCCCAGGCGGCACTGGACAA
TCCTGTGGAACTGGACGTGAAGGCCAGTAACGGCATGCAGACAGGGGCTA
AGGATGAGGCTTTACTAGGAAAAAGTGGATCTTAGCGAAGCTTTCTAGAC
CAT

BS01092.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1792-RA 1119 CG1792-PA 1..1119 17..1135 5595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1792-RA 1344 CG1792-RA 100..1218 17..1135 5595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31616575..31617273 137..835 3495 100 Plus
3R 32079331 3R 31617522..31617711 946..1135 950 100 Plus
3R 32079331 3R 31616402..31616521 17..136 600 100 Plus
3R 32079331 3R 31617349..31617459 835..945 555 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:38:15 has no hits.

BS01092.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:08 Download gff for BS01092.complete
Subject Subject Range Query Range Percent Splice Strand
CG1792-RA 1..1119 17..1135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:18 Download gff for BS01092.complete
Subject Subject Range Query Range Percent Splice Strand
CG1792-RA 63..1183 17..1138 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:10:02 Download gff for BS01092.complete
Subject Subject Range Query Range Percent Splice Strand
CG1792-RA 100..1219 17..1137 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:08 Download gff for BS01092.complete
Subject Subject Range Query Range Percent Splice Strand
CG1792-RA 63..1183 17..1138 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:01 Download gff for BS01092.complete
Subject Subject Range Query Range Percent Splice Strand
CG1792-RA 100..1219 17..1137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:01 Download gff for BS01092.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31616402..31616521 17..136 100 -> Plus
3R 31616575..31617272 137..834 100 -> Plus
3R 31617349..31617459 835..945 100 -> Plus
3R 31617522..31617712 946..1137 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:10:02 Download gff for BS01092.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27442124..27442243 17..136 100 -> Plus
arm_3R 27442297..27442994 137..834 100 -> Plus
arm_3R 27443071..27443181 835..945 100 -> Plus
arm_3R 27443244..27443434 946..1137 99   Plus

BS01092.pep Sequence

Translation from 16 to 1134

> BS01092.pep
MPNRNCRTCGLFIFCSTPSNLFEEPNSVMLHQIEVLTGLFLLGGPGNELP
PFICSPCELDLQTAIAFRERVIRTQKTLQESPNLGNAELIESFAVGVEKE
IQYAEEVTEIEVIDLLPEEHLLEETEEPYEICEQNEQPQVKVPAQEKKLR
RSTKTTPTVFTSVKFADNSQATRTQWSRLTEDEVVALKRERRKRDCICEQ
CGRHFTCPSNFKLHLLRHTGVKSFACDQCSQQFYTATLLRRHQELHAGNA
LFQCRYCEATYSNASGRIQHERMRHTNVKPFTCKECNKSFAMSGKLRTHM
LSHTGVRAFHCDSCQVSFVRRSHLTSHYRSKGHAHTSSAQAALDNPVELD
VKASNGMQTGAKDEALLGKSGS*

BS01092.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1792-PA 372 CG1792-PA 1..372 1..372 1974 100 Plus
ranshi-PA 346 CG9793-PA 1..346 1..346 485 34.7 Plus
CG8159-PB 399 CG8159-PB 6..349 6..354 476 34.2 Plus
CG18764-PA 409 CG18764-PA 159..395 90..333 476 39.1 Plus
CG11762-PA 312 CG11762-PA 1..310 1..340 421 29.5 Plus
CG18764-PA 409 CG18764-PA 5..340 6..334 203 26.2 Plus