Clone Sequence Records
BS01092.3prime Sequence
861 bp (789 high quality bases) assembled on 2005-11-30
> BS01092.3prime
ATGGTCTAGAAAGCTTCGCTAAGATCCACTTTTTCCTAGTAAAGCCTCAT
CCTTAGCCCCTGTCTGCATGCCGTTACTGGCCTTCACGTCCAGTTCCACA
GGATTGTCCAGTGCCGCCTGGGCGCTTGAAGTGTGGGCGTGACCTTTTGA
GCGATAGTGGGAGGTCAGGTGGGAGCGGCGAACGAAGGAGACTTGGCAGG
AGTCGCAGTGGAACGCTCGCACTCCGGTGTGACTCAGCATGTGCGTGCGG
AGTTTTCCGCTCATGGCAAAGCTTTTATTGCATTCCTTGCACGTGAAGGG
CTTGACATTCGTGTGGCGCATGCGTTCGTGCTGGATGCGTCCGCTGGCGT
TGCTGTAGGTTGCCTCGCAGTAGCGACACTGAAACAAAGCATTCCCCGCA
TGCAGTTCTTGGTGGCGCCGCAGAAGCGTAGCAGTGTAGAACTGCTGGGA
GCACTGGTCACAGGCAAAGCTCTTTACGCCGGTGTGTCGGAGGAGGTGCA
ACTTGAAGTTGCTGGGGCAGGTGAAGTGCCGGCCACACTGCTCGCATATG
CAATCCCGCTTGCGTCGCTCCCGCTTTAGGGCCACCACTTCGTCCTCGGT
GAGTCTGCTCCACTGGGTGCGCGTGGCCTGGCTATTGTCCGCAAACTTAA
CGGAGGTAAAGACTGTGGGCGTGGTCTTTGTACTTCTGCGGAGCTTCTTC
TCCTGCGCAGGAACCTTCACTTGGGGCTGCTCGTTCTGCTCACATATTTC
GTACGGCTCTTCCGTCTCTTCCAGCAGGTGTTCCTCGGGTAGAAGGTCTA
TAACCTCGATCTCGGTGACCTCTTCAGCGTACTGAATCTCCTTCTCCACA
CCAACTGCGAA
BS01092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-PA | 1119 | CG1792-RA | 277..1119 | 861..19 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-RA | 1344 | CG1792-RA | 376..1218 | 861..19 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31616731..31617273 | 861..319 | 2715 | 100 | Minus |
3R | 32079331 | 3R | 31617522..31617711 | 208..19 | 950 | 100 | Minus |
3R | 32079331 | 3R | 31617349..31617459 | 319..209 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 14:17:04 has no hits.
BS01092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:36 Download gff for
BS01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-PA | 279..1119 | 19..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:27 Download gff for
BS01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-PA | 279..1119 | 19..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:08:55 Download gff for
BS01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 376..1220 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:56:03 Download gff for
BS01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 376..1220 | 16..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:56:03 Download gff for
BS01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31616731..31617272 | 320..861 | 100 | -> | Minus |
3R | 31617349..31617459 | 209..319 | 100 | -> | Minus |
3R | 31617522..31617713 | 16..208 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:08:55 Download gff for
BS01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27442453..27442994 | 320..861 | 100 | -> | Minus |
arm_3R | 27443071..27443181 | 209..319 | 100 | -> | Minus |
arm_3R | 27443244..27443435 | 16..208 | 99 | | Minus |
BS01092.5prime Sequence
799 bp (676 high quality bases) assembled on 2005-11-30
> BS01092.5prime
GAAGTTATCAGTCGACATGCCGAATCGTAATTGCCGGACTTGCGGCCTGT
TCATTTTCTGTTCGACGCCCAGTAACCTCTTCGAGGAGCCCAATTCCGTA
ATGCTGCACCAGATCGAGGTTCTTACTGGTTTGTTTTTGCTCGGCGGACC
CGGGAACGAGCTGCCCCCCTTTATTTGCTCACCCTGCGAATTGGACCTGC
AGACGGCGATTGCTTTCCGGGAACGTGTGATTCGAACCCAAAAAACGCTG
CAGGAAAGTCCCAACCTGGGGAACGCGGAATTGATCGAATCCTTCGCAGT
TGGTGTGGAGAAGGAGATTCAGTACGCTGAAGAGGTCACCGAGATCGAGG
TTATAGACCTTCTACCCGAGGAACACCTGCTGGAAGAGACGGAAGAGCCG
TACGAAATATGTGAGCAGAACGAGCAGCCCCAAGTGAAGGTTCCTGCGCA
GGAGAAGAAGCTCCGCAGAAGTACAAAGACCACGCCCACAGTCTTTACCT
CCGTTAAGTTTGCGGACAATAGCCAGGCCACGCGCACCCAGTGGAGCAGA
CTCACCGAGGACGAAGTGGTGGCCCTAAAGCGGGAGCGACGCAAGCGGGA
TTGCATATGCGAGCAGTGTGGCCGGCACTTCACCTGCCCCAGCAACTTCA
AGTTGCACCTCCTCCGACACACCGGCGTAAAGAGCTTTGCCTGTGACCAG
TGCTCCCAGCAGTTCTACACTGCTACGCTTCTGCGGCGCCACCAAGAACT
GCATGCGGGGAATGCTTTGTTTCAGTGTCGCTACTGCGAGGGCACCTAC
BS01092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-PA | 1119 | CG1792-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-RA | 1344 | CG1792-RA | 100..882 | 17..799 | 3885 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31616575..31617237 | 137..799 | 3285 | 99.7 | Plus |
3R | 32079331 | 3R | 31616402..31616521 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:00:29 has no hits.
BS01092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:37 Download gff for
BS01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:28 Download gff for
BS01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:55:31 Download gff for
BS01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 100..882 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:37:30 Download gff for
BS01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 100..882 | 17..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:37:30 Download gff for
BS01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31616402..31616521 | 17..136 | 100 | -> | Plus |
3R | 31616575..31617237 | 137..799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:55:31 Download gff for
BS01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27442124..27442243 | 17..136 | 100 | -> | Plus |
arm_3R | 27442297..27442959 | 137..799 | 99 | | Plus |
BS01092.complete Sequence
1153 bp (1153 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634524
> BS01092.complete
GAAGTTATCAGTCGACATGCCGAATCGTAATTGCCGGACTTGCGGCCTGT
TCATTTTCTGTTCGACGCCCAGTAACCTCTTCGAGGAGCCCAATTCCGTA
ATGCTGCACCAGATCGAGGTTCTTACTGGTTTGTTTTTGCTCGGCGGACC
CGGGAACGAGCTGCCCCCCTTTATTTGCTCACCCTGCGAATTGGACCTGC
AGACGGCGATTGCTTTCCGGGAACGTGTGATTCGAACCCAAAAAACGCTG
CAGGAAAGTCCCAACCTGGGGAACGCGGAATTGATCGAATCCTTCGCAGT
TGGTGTGGAGAAGGAGATTCAGTACGCTGAAGAGGTCACCGAGATCGAGG
TTATAGACCTTCTACCCGAGGAACACCTGCTGGAAGAGACGGAAGAGCCG
TACGAAATATGTGAGCAGAACGAGCAGCCCCAAGTGAAGGTTCCTGCGCA
GGAGAAGAAGCTCCGCAGAAGTACAAAGACCACGCCCACAGTCTTTACCT
CCGTTAAGTTTGCGGACAATAGCCAGGCCACGCGCACCCAGTGGAGCAGA
CTCACCGAGGACGAAGTGGTGGCCCTAAAGCGGGAGCGACGCAAGCGGGA
TTGCATATGCGAGCAGTGTGGCCGGCACTTCACCTGCCCCAGCAACTTCA
AGTTGCACCTCCTCCGACACACCGGCGTAAAGAGCTTTGCCTGTGACCAG
TGCTCCCAGCAGTTCTACACTGCTACGCTTCTGCGGCGCCACCAAGAACT
GCATGCGGGGAATGCTTTGTTTCAGTGTCGCTACTGCGAGGCAACCTACA
GCAACGCCAGCGGACGCATCCAGCACGAACGCATGCGCCACACGAATGTC
AAGCCCTTCACGTGCAAGGAATGCAATAAAAGCTTTGCCATGAGCGGAAA
ACTCCGCACGCACATGCTGAGTCACACCGGAGTGCGAGCGTTCCACTGCG
ACTCCTGCCAAGTCTCCTTCGTTCGCCGCTCCCACCTGACCTCCCACTAT
CGCTCAAAAGGTCACGCCCACACTTCAAGCGCCCAGGCGGCACTGGACAA
TCCTGTGGAACTGGACGTGAAGGCCAGTAACGGCATGCAGACAGGGGCTA
AGGATGAGGCTTTACTAGGAAAAAGTGGATCTTAGCGAAGCTTTCTAGAC
CAT
BS01092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-RA | 1119 | CG1792-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-RA | 1344 | CG1792-RA | 100..1218 | 17..1135 | 5595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31616575..31617273 | 137..835 | 3495 | 100 | Plus |
3R | 32079331 | 3R | 31617522..31617711 | 946..1135 | 950 | 100 | Plus |
3R | 32079331 | 3R | 31616402..31616521 | 17..136 | 600 | 100 | Plus |
3R | 32079331 | 3R | 31617349..31617459 | 835..945 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:15 has no hits.
BS01092.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:08 Download gff for
BS01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 1..1119 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:18 Download gff for
BS01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 63..1183 | 17..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:10:02 Download gff for
BS01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 100..1219 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:08 Download gff for
BS01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 63..1183 | 17..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:01 Download gff for
BS01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 100..1219 | 17..1137 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:01 Download gff for
BS01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31616402..31616521 | 17..136 | 100 | -> | Plus |
3R | 31616575..31617272 | 137..834 | 100 | -> | Plus |
3R | 31617349..31617459 | 835..945 | 100 | -> | Plus |
3R | 31617522..31617712 | 946..1137 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:10:02 Download gff for
BS01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27442124..27442243 | 17..136 | 100 | -> | Plus |
arm_3R | 27442297..27442994 | 137..834 | 100 | -> | Plus |
arm_3R | 27443071..27443181 | 835..945 | 100 | -> | Plus |
arm_3R | 27443244..27443434 | 946..1137 | 99 | | Plus |
BS01092.pep Sequence
Translation from 16 to 1134
> BS01092.pep
MPNRNCRTCGLFIFCSTPSNLFEEPNSVMLHQIEVLTGLFLLGGPGNELP
PFICSPCELDLQTAIAFRERVIRTQKTLQESPNLGNAELIESFAVGVEKE
IQYAEEVTEIEVIDLLPEEHLLEETEEPYEICEQNEQPQVKVPAQEKKLR
RSTKTTPTVFTSVKFADNSQATRTQWSRLTEDEVVALKRERRKRDCICEQ
CGRHFTCPSNFKLHLLRHTGVKSFACDQCSQQFYTATLLRRHQELHAGNA
LFQCRYCEATYSNASGRIQHERMRHTNVKPFTCKECNKSFAMSGKLRTHM
LSHTGVRAFHCDSCQVSFVRRSHLTSHYRSKGHAHTSSAQAALDNPVELD
VKASNGMQTGAKDEALLGKSGS*
BS01092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-PA | 372 | CG1792-PA | 1..372 | 1..372 | 1974 | 100 | Plus |
ranshi-PA | 346 | CG9793-PA | 1..346 | 1..346 | 485 | 34.7 | Plus |
CG8159-PB | 399 | CG8159-PB | 6..349 | 6..354 | 476 | 34.2 | Plus |
CG18764-PA | 409 | CG18764-PA | 159..395 | 90..333 | 476 | 39.1 | Plus |
CG11762-PA | 312 | CG11762-PA | 1..310 | 1..340 | 421 | 29.5 | Plus |
CG18764-PA | 409 | CG18764-PA | 5..340 | 6..334 | 203 | 26.2 | Plus |