Clone BS01093 Report

Search the DGRC for BS01093

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG11982-RA
Protein status:BS01093.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01093.3prime Sequence

935 bp (817 high quality bases) assembled on 2005-11-30

> BS01093.3prime
ATGGTCTAGAAAGCTTCGCTAGTCCAGAAACATGTTGTCGTCGTCAAAGG
TAAAGATGTTGTTGCGTGCTGCCTGGGCGGGATTAGCATCCGGACGTGTT
CGGCCGCCTTCCGCCGCTGCCTGACTGGGATTATTAGCCGGCGAGGGATT
GTCCGTTCCTGTGGCGGTGCTGGCCGATCTCCTTTCGGAATTACTGCCAT
CGGCCGCCATCTCTGGTCCGAAGGCATCGAGCATGACAAATTCGTCGTCC
GCATCGTTGCCATCGTCTGCCAGTGACTTGCGGCATATGGGGCAGGTGCT
GTGCAGGTTTAGCCAAGGCACGATGCAGTTCTCGTGATACAGGTGCGAGC
AGGGCAGCTTGCGTACCGTCTCGTCAATCTTGAAGTCGTCCCAGCATATA
GAGCACTGGATCTTGCGGTTTACCTCCTCGGCATTGATCTGCACATTGGG
TATCTCGTTTATGCGCTGCGCCGACAATGGCGGCGGTCCTGAAGTTTCCA
TTTGGTTGAGCATTTGGGTGACAATGGTGTCTAGTCCCTCTCGGCCCCAC
GCATAATCTCCCGGGTTTCCCATGAAGAACATGTGCGAGTTACCGCCGCC
GCCTACACCTCCTCCACCGGGTCCAGTTACTATTTCGGCCGTGGCGCCGG
CCAGTGGCAGGCTCTGCAGAAAATCAAAGAGAACATTGTCCAGTCGGTCC
AAATTTGCCGGACGCACTCGTCCGCCGGCGGTCAGGCCGCGGGCAGAGTC
ACTACCCGAGGGACCACCAAAGCCGCCTAGATGCAGCACGTTGCTGTGCC
GTCTGTTTGGCTCGATGGTAATTTCCNAGTTGGGCACATTCCGCATGTTT
AGCAGCGACACAATATCGTTACGCAGCGACTCAACATTCACCTGAGATCC
GCTCGATGAGCTGCCTCTGCTCAAGGTGTCGTGTG

BS01093.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11982-PA 1143 CG11982-RA 227..1143 935..19 4541 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11982-RA 1575 CG11982-RA 485..1402 935..18 4564 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9006940..9007857 935..18 4564 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 12:09:44 has no hits.

BS01093.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:38 Download gff for BS01093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11982-PA 227..1143 19..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:29 Download gff for BS01093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11982-PA 227..1143 19..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:40:56 Download gff for BS01093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 485..1402 18..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:44:33 Download gff for BS01093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 485..1402 18..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:44:33 Download gff for BS01093.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9006940..9007857 18..935 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:40:56 Download gff for BS01093.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4832662..4833579 18..935 99   Minus

BS01093.5prime Sequence

864 bp (738 high quality bases) assembled on 2005-11-30

> BS01093.5prime
GAAGTTATCAGTCGACATGGCAGAGGCAATGGTTGTGGAGGACCGCCCCG
CGGAAGCCAAGCGATTCTTCTGCCACATGTGCAACGTGGAGATCAACATT
CCCAACTCAGACTTCACCTGTCCGCTGTGCGCCAACGGTTTCGTGGAGGA
GCTGCCGGCAAATGCGCCGGAGATGGATTCTTCGACGGCTGGAGCATCCG
GCAGTGCCAGATCCGGAAGCAGCGGTAGTGGCTCTTCTGGCTCACACGAC
ACCCTGAGCAGAGGCAGCTCATCGAGCGGATCTCAGGTGAATGTTGAGTC
GCTGCGTAACGATATTGTGTCGCTGCTAAACATGCGGAATGTGCCCAACT
TGGAAATTACCATCGAGCCAAACAGACGGCACAGCAACGTGCTGCATCTA
GGCGGCTTTGGTGGTCCCTCGGGTAGTGACTCTGCCCGCGGCCTGACCGC
CGGCGGACGAGTGCGTCCGGCAAATTTGGACCGACTGGACAATGTTCTCT
TTGATTTTCTGCAGAGCCTGCCACTGGCCGGCGCCACGGCCGAAATAGTA
ACTGGACCCGGTGGAGGAGGTGTAGGCGGCGGCGGTAACTCGCACATGTT
CTTCATGGGAAACCCGGGAGATTATGCGTGGGGCCGAGAGGGACTAGACA
CCATTGTCACCCAAATGCTCAACCAAATGGAAACTTCAGGACCGCCGCCA
TTGTCGGCGCAGCGCATAAACGAGATACCCAATGTGCAGATNCATGCCGA
GGAGGTAAACCCGCAGATCCAGTGCTCTATATGCTGGGACGACTTTCAGA
TTGACGAGACGGTACGCAAGCTGCCCTGCTCGCACCTGTATCACGAGAAC
TGCATCGTGCCTTG

BS01093.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11982-PA 1143 CG11982-RA 1..745 17..761 3681 99.7 Plus
CG11982-PA 1143 CG11982-RA 749..848 765..864 450 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11982-RA 1575 CG11982-RA 259..1106 17..864 4139 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9006714..9007561 17..864 4139 99.2 Plus
Blast to na_te.dros performed on 2015-02-13 02:38:51 has no hits.

BS01093.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:40 Download gff for BS01093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11982-PA 1..848 17..864 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:30 Download gff for BS01093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11982-PA 1..848 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:05 Download gff for BS01093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 255..1106 9..864 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:38:41 Download gff for BS01093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 255..1106 9..864 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:38:41 Download gff for BS01093.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9006710..9007561 9..864 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:05 Download gff for BS01093.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4832432..4833283 9..864 98   Plus

BS01093.complete Sequence

1177 bp (1177 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634525

> BS01093.complete
GAAGTTATCAGTCGACATGGCAGAGGCAATGGTTGTGGAGGACCGCCCCG
CGGAAGCCAAGCGATTCTTCTGCCACATGTGCAACGTGGAGATCAACATT
CCCAACTCAGACTTCACCTGTCCGCTGTGCGCCAACGGTTTCGTGGAGGA
GCTGCCGGCAAATGCGCCGGAGATGGATTCTTCGACGGCTGGAGCATCCG
GCAGTGCCAGATCCGGAAGCAGCGGTAGTGGCTCTTCTGGCTCACACGAC
ACCCTGAGCAGAGGCAGCTCATCGAGCGGATCTCAGGTGAATGTTGAGTC
GCTGCGTAACGATATTGTGTCGCTGCTAAACATGCGGAATGTGCCCAACT
TGGAAATTACCATCGAGCCAAACAGACGGCACAGCAACGTGCTGCATCTA
GGCGGCTTTGGTGGTCCCTCGGGTAGTGACTCTGCCCGCGGCCTGACCGC
CGGCGGACGAGTGCGTCCGGCAAATTTGGACCGACTGGACAATGTTCTCT
TTGATTTTCTGCAGAGCCTGCCACTGGCCGGCGCCACGGCCGAAATAGTA
ACTGGACCCGGTGGAGGAGGTGTAGGCGGCGGCGGTAACTCGCACATGTT
CTTCATGGGAAACCCGGGAGATTATGCGTGGGGCCGAGAGGGACTAGACA
CCATTGTCACCCAAATGCTCAACCAAATGGAAACTTCAGGACCGCCGCCA
TTGTCGGCGCAGCGCATAAACGAGATACCCAATGTGCAGATCAATGCCGA
GGAGGTAAACCGCAAGATCCAGTGCTCTATATGCTGGGACGACTTCAAGA
TTGACGAGACGGTACGCAAGCTGCCCTGCTCGCACCTGTATCACGAGAAC
TGCATCGTGCCTTGGCTAAACCTGCACAGCACCTGCCCCATATGCCGCAA
GTCACTGGCAGACGATGGCAACGATGCGGACGACGAATTTGTCATGCTCG
ATGCCTTCGGACCAGAGATGGCGGCCGATGGCAGTAATTCCGAAAGGAGA
TCGGCCAGCACCGCCACAGGAACGGACAATCCCTCGCCGGCTAATAATCC
CAGTCAGGCAGCGGCGGAAGGCGGCCGAACACGTCCGGATGCTAATCCCG
CCCAGGCAGCACGCAACAACATCTTTACCTTTGACGACGACAACATGTTT
CTGGACTAGCGAAGCTTTCTAGACCAT

BS01093.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11982-RA 1143 CG11982-PA 1..1143 17..1159 5715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11982-RA 1575 CG11982-RA 259..1402 17..1160 5720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9006714..9007857 17..1160 5720 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:56:48 has no hits.

BS01093.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:09 Download gff for BS01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 1..1143 17..1159 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:19 Download gff for BS01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 259..1406 9..1160 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:21 Download gff for BS01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 259..1402 17..1161 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:10 Download gff for BS01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 259..1406 9..1160 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:31 Download gff for BS01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 259..1402 17..1161 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:31 Download gff for BS01093.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9006714..9007857 17..1161 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:21 Download gff for BS01093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4832436..4833579 17..1161 99   Plus

BS01093.pep Sequence

Translation from 16 to 1158

> BS01093.pep
MAEAMVVEDRPAEAKRFFCHMCNVEINIPNSDFTCPLCANGFVEELPANA
PEMDSSTAGASGSARSGSSGSGSSGSHDTLSRGSSSSGSQVNVESLRNDI
VSLLNMRNVPNLEITIEPNRRHSNVLHLGGFGGPSGSDSARGLTAGGRVR
PANLDRLDNVLFDFLQSLPLAGATAEIVTGPGGGGVGGGGNSHMFFMGNP
GDYAWGREGLDTIVTQMLNQMETSGPPPLSAQRINEIPNVQINAEEVNRK
IQCSICWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLADD
GNDADDEFVMLDAFGPEMAADGSNSERRSASTATGTDNPSPANNPSQAAA
EGGRTRPDANPAQAARNNIFTFDDDNMFLD*

BS01093.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11982-PA 380 CG11982-PA 1..380 1..380 2015 100 Plus
mura-PB 868 CG9381-PB 744..867 226..350 174 31 Plus
mura-PA 868 CG9381-PA 744..867 226..350 174 31 Plus
mura-PC 1173 CG9381-PC 1049..1172 226..350 174 31 Plus