Clone Sequence Records
BS01093.3prime Sequence
935 bp (817 high quality bases) assembled on 2005-11-30
> BS01093.3prime
ATGGTCTAGAAAGCTTCGCTAGTCCAGAAACATGTTGTCGTCGTCAAAGG
TAAAGATGTTGTTGCGTGCTGCCTGGGCGGGATTAGCATCCGGACGTGTT
CGGCCGCCTTCCGCCGCTGCCTGACTGGGATTATTAGCCGGCGAGGGATT
GTCCGTTCCTGTGGCGGTGCTGGCCGATCTCCTTTCGGAATTACTGCCAT
CGGCCGCCATCTCTGGTCCGAAGGCATCGAGCATGACAAATTCGTCGTCC
GCATCGTTGCCATCGTCTGCCAGTGACTTGCGGCATATGGGGCAGGTGCT
GTGCAGGTTTAGCCAAGGCACGATGCAGTTCTCGTGATACAGGTGCGAGC
AGGGCAGCTTGCGTACCGTCTCGTCAATCTTGAAGTCGTCCCAGCATATA
GAGCACTGGATCTTGCGGTTTACCTCCTCGGCATTGATCTGCACATTGGG
TATCTCGTTTATGCGCTGCGCCGACAATGGCGGCGGTCCTGAAGTTTCCA
TTTGGTTGAGCATTTGGGTGACAATGGTGTCTAGTCCCTCTCGGCCCCAC
GCATAATCTCCCGGGTTTCCCATGAAGAACATGTGCGAGTTACCGCCGCC
GCCTACACCTCCTCCACCGGGTCCAGTTACTATTTCGGCCGTGGCGCCGG
CCAGTGGCAGGCTCTGCAGAAAATCAAAGAGAACATTGTCCAGTCGGTCC
AAATTTGCCGGACGCACTCGTCCGCCGGCGGTCAGGCCGCGGGCAGAGTC
ACTACCCGAGGGACCACCAAAGCCGCCTAGATGCAGCACGTTGCTGTGCC
GTCTGTTTGGCTCGATGGTAATTTCCNAGTTGGGCACATTCCGCATGTTT
AGCAGCGACACAATATCGTTACGCAGCGACTCAACATTCACCTGAGATCC
GCTCGATGAGCTGCCTCTGCTCAAGGTGTCGTGTG
BS01093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11982-PA | 1143 | CG11982-RA | 227..1143 | 935..19 | 4541 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11982-RA | 1575 | CG11982-RA | 485..1402 | 935..18 | 4564 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9006940..9007857 | 935..18 | 4564 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:09:44 has no hits.
BS01093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:38 Download gff for
BS01093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-PA | 227..1143 | 19..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:29 Download gff for
BS01093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-PA | 227..1143 | 19..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:40:56 Download gff for
BS01093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-RA | 485..1402 | 18..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:44:33 Download gff for
BS01093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-RA | 485..1402 | 18..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:44:33 Download gff for
BS01093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9006940..9007857 | 18..935 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:40:56 Download gff for
BS01093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4832662..4833579 | 18..935 | 99 | | Minus |
BS01093.5prime Sequence
864 bp (738 high quality bases) assembled on 2005-11-30
> BS01093.5prime
GAAGTTATCAGTCGACATGGCAGAGGCAATGGTTGTGGAGGACCGCCCCG
CGGAAGCCAAGCGATTCTTCTGCCACATGTGCAACGTGGAGATCAACATT
CCCAACTCAGACTTCACCTGTCCGCTGTGCGCCAACGGTTTCGTGGAGGA
GCTGCCGGCAAATGCGCCGGAGATGGATTCTTCGACGGCTGGAGCATCCG
GCAGTGCCAGATCCGGAAGCAGCGGTAGTGGCTCTTCTGGCTCACACGAC
ACCCTGAGCAGAGGCAGCTCATCGAGCGGATCTCAGGTGAATGTTGAGTC
GCTGCGTAACGATATTGTGTCGCTGCTAAACATGCGGAATGTGCCCAACT
TGGAAATTACCATCGAGCCAAACAGACGGCACAGCAACGTGCTGCATCTA
GGCGGCTTTGGTGGTCCCTCGGGTAGTGACTCTGCCCGCGGCCTGACCGC
CGGCGGACGAGTGCGTCCGGCAAATTTGGACCGACTGGACAATGTTCTCT
TTGATTTTCTGCAGAGCCTGCCACTGGCCGGCGCCACGGCCGAAATAGTA
ACTGGACCCGGTGGAGGAGGTGTAGGCGGCGGCGGTAACTCGCACATGTT
CTTCATGGGAAACCCGGGAGATTATGCGTGGGGCCGAGAGGGACTAGACA
CCATTGTCACCCAAATGCTCAACCAAATGGAAACTTCAGGACCGCCGCCA
TTGTCGGCGCAGCGCATAAACGAGATACCCAATGTGCAGATNCATGCCGA
GGAGGTAAACCCGCAGATCCAGTGCTCTATATGCTGGGACGACTTTCAGA
TTGACGAGACGGTACGCAAGCTGCCCTGCTCGCACCTGTATCACGAGAAC
TGCATCGTGCCTTG
BS01093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11982-PA | 1143 | CG11982-RA | 1..745 | 17..761 | 3681 | 99.7 | Plus |
CG11982-PA | 1143 | CG11982-RA | 749..848 | 765..864 | 450 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11982-RA | 1575 | CG11982-RA | 259..1106 | 17..864 | 4139 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9006714..9007561 | 17..864 | 4139 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:38:51 has no hits.
BS01093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:40 Download gff for
BS01093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:30 Download gff for
BS01093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:05 Download gff for
BS01093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-RA | 255..1106 | 9..864 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:38:41 Download gff for
BS01093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-RA | 255..1106 | 9..864 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:38:41 Download gff for
BS01093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9006710..9007561 | 9..864 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:05 Download gff for
BS01093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4832432..4833283 | 9..864 | 98 | | Plus |
BS01093.complete Sequence
1177 bp (1177 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634525
> BS01093.complete
GAAGTTATCAGTCGACATGGCAGAGGCAATGGTTGTGGAGGACCGCCCCG
CGGAAGCCAAGCGATTCTTCTGCCACATGTGCAACGTGGAGATCAACATT
CCCAACTCAGACTTCACCTGTCCGCTGTGCGCCAACGGTTTCGTGGAGGA
GCTGCCGGCAAATGCGCCGGAGATGGATTCTTCGACGGCTGGAGCATCCG
GCAGTGCCAGATCCGGAAGCAGCGGTAGTGGCTCTTCTGGCTCACACGAC
ACCCTGAGCAGAGGCAGCTCATCGAGCGGATCTCAGGTGAATGTTGAGTC
GCTGCGTAACGATATTGTGTCGCTGCTAAACATGCGGAATGTGCCCAACT
TGGAAATTACCATCGAGCCAAACAGACGGCACAGCAACGTGCTGCATCTA
GGCGGCTTTGGTGGTCCCTCGGGTAGTGACTCTGCCCGCGGCCTGACCGC
CGGCGGACGAGTGCGTCCGGCAAATTTGGACCGACTGGACAATGTTCTCT
TTGATTTTCTGCAGAGCCTGCCACTGGCCGGCGCCACGGCCGAAATAGTA
ACTGGACCCGGTGGAGGAGGTGTAGGCGGCGGCGGTAACTCGCACATGTT
CTTCATGGGAAACCCGGGAGATTATGCGTGGGGCCGAGAGGGACTAGACA
CCATTGTCACCCAAATGCTCAACCAAATGGAAACTTCAGGACCGCCGCCA
TTGTCGGCGCAGCGCATAAACGAGATACCCAATGTGCAGATCAATGCCGA
GGAGGTAAACCGCAAGATCCAGTGCTCTATATGCTGGGACGACTTCAAGA
TTGACGAGACGGTACGCAAGCTGCCCTGCTCGCACCTGTATCACGAGAAC
TGCATCGTGCCTTGGCTAAACCTGCACAGCACCTGCCCCATATGCCGCAA
GTCACTGGCAGACGATGGCAACGATGCGGACGACGAATTTGTCATGCTCG
ATGCCTTCGGACCAGAGATGGCGGCCGATGGCAGTAATTCCGAAAGGAGA
TCGGCCAGCACCGCCACAGGAACGGACAATCCCTCGCCGGCTAATAATCC
CAGTCAGGCAGCGGCGGAAGGCGGCCGAACACGTCCGGATGCTAATCCCG
CCCAGGCAGCACGCAACAACATCTTTACCTTTGACGACGACAACATGTTT
CTGGACTAGCGAAGCTTTCTAGACCAT
BS01093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11982-RA | 1143 | CG11982-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11982-RA | 1575 | CG11982-RA | 259..1402 | 17..1160 | 5720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9006714..9007857 | 17..1160 | 5720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:56:48 has no hits.
BS01093.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:09 Download gff for
BS01093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-RA | 1..1143 | 17..1159 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:19 Download gff for
BS01093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-RA | 259..1406 | 9..1160 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:21 Download gff for
BS01093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-RA | 259..1402 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:10 Download gff for
BS01093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-RA | 259..1406 | 9..1160 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:31 Download gff for
BS01093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11982-RA | 259..1402 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:31 Download gff for
BS01093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9006714..9007857 | 17..1161 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:21 Download gff for
BS01093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4832436..4833579 | 17..1161 | 99 | | Plus |
BS01093.pep Sequence
Translation from 16 to 1158
> BS01093.pep
MAEAMVVEDRPAEAKRFFCHMCNVEINIPNSDFTCPLCANGFVEELPANA
PEMDSSTAGASGSARSGSSGSGSSGSHDTLSRGSSSSGSQVNVESLRNDI
VSLLNMRNVPNLEITIEPNRRHSNVLHLGGFGGPSGSDSARGLTAGGRVR
PANLDRLDNVLFDFLQSLPLAGATAEIVTGPGGGGVGGGGNSHMFFMGNP
GDYAWGREGLDTIVTQMLNQMETSGPPPLSAQRINEIPNVQINAEEVNRK
IQCSICWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLADD
GNDADDEFVMLDAFGPEMAADGSNSERRSASTATGTDNPSPANNPSQAAA
EGGRTRPDANPAQAARNNIFTFDDDNMFLD*
BS01093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11982-PA | 380 | CG11982-PA | 1..380 | 1..380 | 2015 | 100 | Plus |
mura-PB | 868 | CG9381-PB | 744..867 | 226..350 | 174 | 31 | Plus |
mura-PA | 868 | CG9381-PA | 744..867 | 226..350 | 174 | 31 | Plus |
mura-PC | 1173 | CG9381-PC | 1049..1172 | 226..350 | 174 | 31 | Plus |