Clone BS01096 Report

Search the DGRC for BS01096

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptsug-RA
Protein status:BS01096.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01096.3prime Sequence

906 bp (787 high quality bases) assembled on 2005-11-30

> BS01096.3prime
ATGGTCTAGAAAGCTTCGTCAGATTCGATGGATGCGCAGGTCGAGCGGTG
ACTCCACGTCCATCTTAACGAAGAAGTCCTCGCTGTGGAGATAGCTATGC
TGTCTATCGCCTAGCCAATAGCTGGGCGAGAATTCCGCATCCTGTTTGGG
TTTTAGCGAGTAATCGCTGGGCTCATTGTTGGAGTCATCGTAGTAGCGGG
CGGATGAGGAGGAGCTGGTGGACTCCACACTGCTGGCAGCGGGAAGACAC
GTGAACGCTGATTCGCTGCTGGCCTCCAGGAGACAGGGTACGCTGGGCAG
AGTGAGCGGCTGGCTGGCGATCAGGTGGATGCTGTGCTTGAAGGTCTTGA
CGTGCTTTCGCAGCGAGGACGGATCCGTGTAGCGCTTCTGGCAGCCGGCC
ACTTTGCACATGTACGGCTTCTCCATCGAATGGGTGCGCGTGTGCTTGAA
ACGATCCGAGGAGTTCGAGTACGCCTTCTGGCAGCCCTCGAAGCTGCACT
TGTAGGGTTTCTCGCCCGAGTGTGACCTAATGTGGATCTTCAGGTTCTCC
GCCCGCGAGAAGGACTTCTCGCACAGGTGACAGCGATGTGGCTTCTCCTT
CGTGTGGGTGCGGGTATGGACAAGCATCTTGTAGCGGGCATTGAATCCTC
GCTCGCTGCGCTGACATCCCCGCCAGCGGCAATAGTAGAGTCCGTCTGTC
AGGCTGGCGATCGCATGTCGCTGGGTCACGTGCTGTGCCAGTGCATCCAA
GGTGTCGAAAACTCTATCGCAATCTGTCCAGTTGCATACGAAATCGCTGG
CGGTGCCGCACTCGCTGCTGCTGCTGCAGGACTTGCTGTCGTCGGGGAAC
TCCACTGGACTGCGGCAGAGCTCGTCCTGCTGGCCACGAGCCTTCATGAT
CACGGA

BS01096.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3850-PA 1155 sug-RA 268..1155 906..19 4440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
sug-RB 1468 CG3850-RB 465..1352 906..19 4440 100 Minus
sug-RA 1343 CG3850-RA 340..1227 906..19 4440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12929782..12930528 765..19 3735 100 Minus
2R 25286936 2R 12929199..12929341 906..764 715 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:57:32 has no hits.

BS01096.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:43 Download gff for BS01096.3prime
Subject Subject Range Query Range Percent Splice Strand
sug-PA 269..1155 19..905 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:34 Download gff for BS01096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3850-PA 269..1155 19..905 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:08:01 Download gff for BS01096.3prime
Subject Subject Range Query Range Percent Splice Strand
sug-RA 341..1230 12..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:06 Download gff for BS01096.3prime
Subject Subject Range Query Range Percent Splice Strand
sug-RA 341..1230 12..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:06 Download gff for BS01096.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12929200..12929341 764..905 100 -> Minus
2R 12929784..12930531 12..763 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:08:01 Download gff for BS01096.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8816705..8816846 764..905 100 -> Minus
arm_2R 8817289..8818036 12..763 99   Minus

BS01096.5prime Sequence

926 bp (846 high quality bases) assembled on 2005-11-30

> BS01096.5prime
GAAGTTATCAGTCGACATGGATATAATACAAAAGTCAATCTTCAACAGCG
GCCCACACAGCAGAGGCATCTACGAGCCGCCTCTCGGCTACTTTACGCCG
TATAACACACCACCGTACATAGCCGCCTACTCGGATTCCGGCAGCTGGTT
GGCGGATCACCACCAACACCACCAGCAGCAGCACCAGCAGCACCAGCAGC
AGATGCAGCACATCAGGTTTCCCACGCCGCCCATCACACCGCCGCGTCCC
ATCGCCGGATACGGATATCGTCAGCGCACCCAGTCCGTGATCATGAAGGC
TCGTGGCCAGCAGGACGAGCTCTGCCGCAGTCCAGTGGAGTTCCCCGACG
ACAGCAAGTCCTGCAGCAGCAGCAGCGAGTGCGGCACCGCCAGCGATTTC
GTATGCAACTGGACAGATTGCGATAGAGTTTTCGACACCTTGGATGCACT
GGCACAGCACGTGACCCAGCGACATGCGATCGCCAGCCTGACAGACGGAC
TCTACTATTGCCGCTGGCGGGGATGTCAGCGCAGCGAGCGAGGATTCAAT
GCCCGCTACAAGATGCTTGTCCATACCCGCACCCACACGAAGGAGAAGCC
ACATCGCTGTCACCTGTGCGAGAAGTCCTTCTCGCGGGCGGAGAACCTGA
AGATCCACATTAGGTCACACTCGGGCGAGAAACCCTACAAGTGCAGCTTC
GAGGGCTGCCAGAAGGCGTACTCGAACTCCTCGGATCGTTTCAAGCACAC
GCGCACCCATTCGATGGAGAAGCCGTACATGTGCAAAGTGGCCGGCTGCC
AGAAGCGCTACACGGATCCGTCCTCGCTGCGAAAGCACGTCAAGACCTTN
CAGCACAGCATCCACCTGATCGCCAGCCAGCCGCTCACTCTGCCCAGCGT
AACCTGTCTCCTGGAGGCCAGCAGCG

BS01096.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3850-PA 1155 sug-RA 1..910 17..926 4481 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
sug-RA 1343 CG3850-RA 71..982 15..926 4519 99.7 Plus
sug-RB 1468 CG3850-RB 228..1107 47..926 4359 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12929782..12930283 425..926 2469 99.4 Plus
2R 25286936 2R 12928930..12929341 15..426 2060 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:09:24 has no hits.

BS01096.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:44 Download gff for BS01096.5prime
Subject Subject Range Query Range Percent Splice Strand
sug-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:36 Download gff for BS01096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3850-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:08:00 Download gff for BS01096.5prime
Subject Subject Range Query Range Percent Splice Strand
sug-RA 65..982 9..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:49:40 Download gff for BS01096.5prime
Subject Subject Range Query Range Percent Splice Strand
sug-RA 65..982 9..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:49:40 Download gff for BS01096.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12928924..12929341 9..426 99 -> Plus
2R 12929784..12930283 427..926 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:08:00 Download gff for BS01096.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8816429..8816846 9..426 99 -> Plus
arm_2R 8817289..8817788 427..926 99   Plus

BS01096.complete Sequence

1189 bp (1189 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634526

> BS01096.complete
GAAGTTATCAGTCGACATGGATATAATACAAAAGTCAATCTTCAACAGCG
GCCCACACAGCAGAGGCATCTACGAGCCGCCTCTCGGCTACTTTACGCCG
TATAACACACCACCGTACATAGCCGCCTACTCGGATTCCGGCAGCTGGTT
GGCGGATCACCACCAACACCACCAGCAGCAGCACCAGCAGCACCAGCAGC
AGATGCAGCACATCAGGTTTCCCACGCCGCCCATCACACCGCCGCGTCCC
ATCGCCGGATACGGATATCGTCAGCGCACCCAGTCCGTGATCATGAAGGC
TCGTGGCCAGCAGGACGAGCTCTGCCGCAGTCCAGTGGAGTTCCCCGACG
ACAGCAAGTCCTGCAGCAGCAGCAGCGAGTGCGGCACCGCCAGCGATTTC
GTATGCAACTGGACAGATTGCGATAGAGTTTTCGACACCTTGGATGCACT
GGCACAGCACGTGACCCAGCGACATGCGATCGCCAGCCTGACAGACGGAC
TCTACTATTGCCGCTGGCGGGGATGTCAGCGCAGCGAGCGAGGATTCAAT
GCCCGCTACAAGATGCTTGTCCATACCCGCACCCACACGAAGGAGAAGCC
ACATCGCTGTCACCTGTGCGAGAAGTCCTTCTCGCGGGCGGAGAACCTGA
AGATCCACATTAGGTCACACTCGGGCGAGAAACCCTACAAGTGCAGCTTC
GAGGGCTGCCAGAAGGCGTACTCGAACTCCTCGGATCGTTTCAAGCACAC
GCGCACCCATTCGATGGAGAAGCCGTACATGTGCAAAGTGGCCGGCTGCC
AGAAGCGCTACACGGATCCGTCCTCGCTGCGAAAGCACGTCAAGACCTTC
AAGCACAGCATCCACCTGATCGCCAGCCAGCCGCTCACTCTGCCCAGCGT
ACCCTGTCTCCTGGAGGCCAGCAGCGAATCAGCGTTCACGTGTCTTCCCG
CTGCCAGCAGTGTGGAGTCCACCAGCTCCTCCTCATCCGCCCGCTACTAC
GATGACTCCAACAATGAGCCCAGCGATTACTCGCTAAAACCCAAACAGGA
TGCGGAATTCTCGCCCAGCTATTGGCTAGGCGATAGACAGCATAGCTATC
TCCACAGCGAGGACTTCTTCGTTAAGATGGACGTGGAGTCACCGCTCGAC
CTGCGCATCCATCGAATCTGACGAAGCTTTCTAGACCAT

BS01096.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
sug-RA 1155 CG3850-PA 1..1155 17..1171 5775 100 Plus
sug-RB 969 CG3850-PB 1..969 203..1171 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
sug-RA 1343 CG3850-RA 71..1227 15..1171 5785 100 Plus
sug-RB 1468 CG3850-RB 228..1352 47..1171 5625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12929782..12930528 425..1171 3735 100 Plus
2R 25286936 2R 12928930..12929341 15..426 2060 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:22:59 has no hits.

BS01096.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:11 Download gff for BS01096.complete
Subject Subject Range Query Range Percent Splice Strand
sug-RA 1..1155 17..1171 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:21 Download gff for BS01096.complete
Subject Subject Range Query Range Percent Splice Strand
sug-RA 62..1227 9..1178 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:20 Download gff for BS01096.complete
Subject Subject Range Query Range Percent Splice Strand
sug-RA 73..1227 17..1173 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:11 Download gff for BS01096.complete
Subject Subject Range Query Range Percent Splice Strand
sug-RA 62..1227 9..1178 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:26 Download gff for BS01096.complete
Subject Subject Range Query Range Percent Splice Strand
sug-RA 73..1227 17..1173 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:26 Download gff for BS01096.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12928932..12929341 17..426 100 -> Plus
2R 12929784..12930528 427..1173 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:20 Download gff for BS01096.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8816437..8816846 17..426 100 -> Plus
arm_2R 8817289..8818033 427..1173 99   Plus

BS01096.pep Sequence

Translation from 16 to 1170

> BS01096.pep
MDIIQKSIFNSGPHSRGIYEPPLGYFTPYNTPPYIAAYSDSGSWLADHHQ
HHQQQHQQHQQQMQHIRFPTPPITPPRPIAGYGYRQRTQSVIMKARGQQD
ELCRSPVEFPDDSKSCSSSSECGTASDFVCNWTDCDRVFDTLDALAQHVT
QRHAIASLTDGLYYCRWRGCQRSERGFNARYKMLVHTRTHTKEKPHRCHL
CEKSFSRAENLKIHIRSHSGEKPYKCSFEGCQKAYSNSSDRFKHTRTHSM
EKPYMCKVAGCQKRYTDPSSLRKHVKTFKHSIHLIASQPLTLPSVPCLLE
ASSESAFTCLPAASSVESTSSSSSARYYDDSNNEPSDYSLKPKQDAEFSP
SYWLGDRQHSYLHSEDFFVKMDVESPLDLRIHRI*

BS01096.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
sug-PA 384 CG3850-PA 1..384 1..384 2105 100 Plus
sug-PB 322 CG3850-PB 1..322 63..384 1751 100 Plus
ci-PB 1279 CG2125-PB 291..483 93..277 465 46.7 Plus
ci-PA 1397 CG2125-PA 409..601 93..277 465 46.7 Plus
lmd-PB 866 CG4677-PB 333..584 53..276 463 39.5 Plus