Clone Sequence Records
BS01096.3prime Sequence
906 bp (787 high quality bases) assembled on 2005-11-30
> BS01096.3prime
ATGGTCTAGAAAGCTTCGTCAGATTCGATGGATGCGCAGGTCGAGCGGTG
ACTCCACGTCCATCTTAACGAAGAAGTCCTCGCTGTGGAGATAGCTATGC
TGTCTATCGCCTAGCCAATAGCTGGGCGAGAATTCCGCATCCTGTTTGGG
TTTTAGCGAGTAATCGCTGGGCTCATTGTTGGAGTCATCGTAGTAGCGGG
CGGATGAGGAGGAGCTGGTGGACTCCACACTGCTGGCAGCGGGAAGACAC
GTGAACGCTGATTCGCTGCTGGCCTCCAGGAGACAGGGTACGCTGGGCAG
AGTGAGCGGCTGGCTGGCGATCAGGTGGATGCTGTGCTTGAAGGTCTTGA
CGTGCTTTCGCAGCGAGGACGGATCCGTGTAGCGCTTCTGGCAGCCGGCC
ACTTTGCACATGTACGGCTTCTCCATCGAATGGGTGCGCGTGTGCTTGAA
ACGATCCGAGGAGTTCGAGTACGCCTTCTGGCAGCCCTCGAAGCTGCACT
TGTAGGGTTTCTCGCCCGAGTGTGACCTAATGTGGATCTTCAGGTTCTCC
GCCCGCGAGAAGGACTTCTCGCACAGGTGACAGCGATGTGGCTTCTCCTT
CGTGTGGGTGCGGGTATGGACAAGCATCTTGTAGCGGGCATTGAATCCTC
GCTCGCTGCGCTGACATCCCCGCCAGCGGCAATAGTAGAGTCCGTCTGTC
AGGCTGGCGATCGCATGTCGCTGGGTCACGTGCTGTGCCAGTGCATCCAA
GGTGTCGAAAACTCTATCGCAATCTGTCCAGTTGCATACGAAATCGCTGG
CGGTGCCGCACTCGCTGCTGCTGCTGCAGGACTTGCTGTCGTCGGGGAAC
TCCACTGGACTGCGGCAGAGCTCGTCCTGCTGGCCACGAGCCTTCATGAT
CACGGA
BS01096.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3850-PA | 1155 | sug-RA | 268..1155 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sug-RB | 1468 | CG3850-RB | 465..1352 | 906..19 | 4440 | 100 | Minus |
sug-RA | 1343 | CG3850-RA | 340..1227 | 906..19 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12929782..12930528 | 765..19 | 3735 | 100 | Minus |
2R | 25286936 | 2R | 12929199..12929341 | 906..764 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:57:32 has no hits.
BS01096.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:43 Download gff for
BS01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-PA | 269..1155 | 19..905 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:34 Download gff for
BS01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3850-PA | 269..1155 | 19..905 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:08:01 Download gff for
BS01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 341..1230 | 12..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:06 Download gff for
BS01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 341..1230 | 12..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:06 Download gff for
BS01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12929200..12929341 | 764..905 | 100 | -> | Minus |
2R | 12929784..12930531 | 12..763 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:08:01 Download gff for
BS01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8816705..8816846 | 764..905 | 100 | -> | Minus |
arm_2R | 8817289..8818036 | 12..763 | 99 | | Minus |
BS01096.5prime Sequence
926 bp (846 high quality bases) assembled on 2005-11-30
> BS01096.5prime
GAAGTTATCAGTCGACATGGATATAATACAAAAGTCAATCTTCAACAGCG
GCCCACACAGCAGAGGCATCTACGAGCCGCCTCTCGGCTACTTTACGCCG
TATAACACACCACCGTACATAGCCGCCTACTCGGATTCCGGCAGCTGGTT
GGCGGATCACCACCAACACCACCAGCAGCAGCACCAGCAGCACCAGCAGC
AGATGCAGCACATCAGGTTTCCCACGCCGCCCATCACACCGCCGCGTCCC
ATCGCCGGATACGGATATCGTCAGCGCACCCAGTCCGTGATCATGAAGGC
TCGTGGCCAGCAGGACGAGCTCTGCCGCAGTCCAGTGGAGTTCCCCGACG
ACAGCAAGTCCTGCAGCAGCAGCAGCGAGTGCGGCACCGCCAGCGATTTC
GTATGCAACTGGACAGATTGCGATAGAGTTTTCGACACCTTGGATGCACT
GGCACAGCACGTGACCCAGCGACATGCGATCGCCAGCCTGACAGACGGAC
TCTACTATTGCCGCTGGCGGGGATGTCAGCGCAGCGAGCGAGGATTCAAT
GCCCGCTACAAGATGCTTGTCCATACCCGCACCCACACGAAGGAGAAGCC
ACATCGCTGTCACCTGTGCGAGAAGTCCTTCTCGCGGGCGGAGAACCTGA
AGATCCACATTAGGTCACACTCGGGCGAGAAACCCTACAAGTGCAGCTTC
GAGGGCTGCCAGAAGGCGTACTCGAACTCCTCGGATCGTTTCAAGCACAC
GCGCACCCATTCGATGGAGAAGCCGTACATGTGCAAAGTGGCCGGCTGCC
AGAAGCGCTACACGGATCCGTCCTCGCTGCGAAAGCACGTCAAGACCTTN
CAGCACAGCATCCACCTGATCGCCAGCCAGCCGCTCACTCTGCCCAGCGT
AACCTGTCTCCTGGAGGCCAGCAGCG
BS01096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3850-PA | 1155 | sug-RA | 1..910 | 17..926 | 4481 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sug-RA | 1343 | CG3850-RA | 71..982 | 15..926 | 4519 | 99.7 | Plus |
sug-RB | 1468 | CG3850-RB | 228..1107 | 47..926 | 4359 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12929782..12930283 | 425..926 | 2469 | 99.4 | Plus |
2R | 25286936 | 2R | 12928930..12929341 | 15..426 | 2060 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:09:24 has no hits.
BS01096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:44 Download gff for
BS01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:36 Download gff for
BS01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3850-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:08:00 Download gff for
BS01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 65..982 | 9..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:49:40 Download gff for
BS01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 65..982 | 9..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:49:40 Download gff for
BS01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12928924..12929341 | 9..426 | 99 | -> | Plus |
2R | 12929784..12930283 | 427..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:08:00 Download gff for
BS01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8816429..8816846 | 9..426 | 99 | -> | Plus |
arm_2R | 8817289..8817788 | 427..926 | 99 | | Plus |
BS01096.complete Sequence
1189 bp (1189 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634526
> BS01096.complete
GAAGTTATCAGTCGACATGGATATAATACAAAAGTCAATCTTCAACAGCG
GCCCACACAGCAGAGGCATCTACGAGCCGCCTCTCGGCTACTTTACGCCG
TATAACACACCACCGTACATAGCCGCCTACTCGGATTCCGGCAGCTGGTT
GGCGGATCACCACCAACACCACCAGCAGCAGCACCAGCAGCACCAGCAGC
AGATGCAGCACATCAGGTTTCCCACGCCGCCCATCACACCGCCGCGTCCC
ATCGCCGGATACGGATATCGTCAGCGCACCCAGTCCGTGATCATGAAGGC
TCGTGGCCAGCAGGACGAGCTCTGCCGCAGTCCAGTGGAGTTCCCCGACG
ACAGCAAGTCCTGCAGCAGCAGCAGCGAGTGCGGCACCGCCAGCGATTTC
GTATGCAACTGGACAGATTGCGATAGAGTTTTCGACACCTTGGATGCACT
GGCACAGCACGTGACCCAGCGACATGCGATCGCCAGCCTGACAGACGGAC
TCTACTATTGCCGCTGGCGGGGATGTCAGCGCAGCGAGCGAGGATTCAAT
GCCCGCTACAAGATGCTTGTCCATACCCGCACCCACACGAAGGAGAAGCC
ACATCGCTGTCACCTGTGCGAGAAGTCCTTCTCGCGGGCGGAGAACCTGA
AGATCCACATTAGGTCACACTCGGGCGAGAAACCCTACAAGTGCAGCTTC
GAGGGCTGCCAGAAGGCGTACTCGAACTCCTCGGATCGTTTCAAGCACAC
GCGCACCCATTCGATGGAGAAGCCGTACATGTGCAAAGTGGCCGGCTGCC
AGAAGCGCTACACGGATCCGTCCTCGCTGCGAAAGCACGTCAAGACCTTC
AAGCACAGCATCCACCTGATCGCCAGCCAGCCGCTCACTCTGCCCAGCGT
ACCCTGTCTCCTGGAGGCCAGCAGCGAATCAGCGTTCACGTGTCTTCCCG
CTGCCAGCAGTGTGGAGTCCACCAGCTCCTCCTCATCCGCCCGCTACTAC
GATGACTCCAACAATGAGCCCAGCGATTACTCGCTAAAACCCAAACAGGA
TGCGGAATTCTCGCCCAGCTATTGGCTAGGCGATAGACAGCATAGCTATC
TCCACAGCGAGGACTTCTTCGTTAAGATGGACGTGGAGTCACCGCTCGAC
CTGCGCATCCATCGAATCTGACGAAGCTTTCTAGACCAT
BS01096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sug-RA | 1155 | CG3850-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
sug-RB | 969 | CG3850-PB | 1..969 | 203..1171 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sug-RA | 1343 | CG3850-RA | 71..1227 | 15..1171 | 5785 | 100 | Plus |
sug-RB | 1468 | CG3850-RB | 228..1352 | 47..1171 | 5625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12929782..12930528 | 425..1171 | 3735 | 100 | Plus |
2R | 25286936 | 2R | 12928930..12929341 | 15..426 | 2060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:22:59 has no hits.
BS01096.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:11 Download gff for
BS01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 1..1155 | 17..1171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:21 Download gff for
BS01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 62..1227 | 9..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:20 Download gff for
BS01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 73..1227 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:11 Download gff for
BS01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 62..1227 | 9..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:26 Download gff for
BS01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 73..1227 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:26 Download gff for
BS01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12928932..12929341 | 17..426 | 100 | -> | Plus |
2R | 12929784..12930528 | 427..1173 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:20 Download gff for
BS01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8816437..8816846 | 17..426 | 100 | -> | Plus |
arm_2R | 8817289..8818033 | 427..1173 | 99 | | Plus |
BS01096.pep Sequence
Translation from 16 to 1170
> BS01096.pep
MDIIQKSIFNSGPHSRGIYEPPLGYFTPYNTPPYIAAYSDSGSWLADHHQ
HHQQQHQQHQQQMQHIRFPTPPITPPRPIAGYGYRQRTQSVIMKARGQQD
ELCRSPVEFPDDSKSCSSSSECGTASDFVCNWTDCDRVFDTLDALAQHVT
QRHAIASLTDGLYYCRWRGCQRSERGFNARYKMLVHTRTHTKEKPHRCHL
CEKSFSRAENLKIHIRSHSGEKPYKCSFEGCQKAYSNSSDRFKHTRTHSM
EKPYMCKVAGCQKRYTDPSSLRKHVKTFKHSIHLIASQPLTLPSVPCLLE
ASSESAFTCLPAASSVESTSSSSSARYYDDSNNEPSDYSLKPKQDAEFSP
SYWLGDRQHSYLHSEDFFVKMDVESPLDLRIHRI*
BS01096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sug-PA | 384 | CG3850-PA | 1..384 | 1..384 | 2105 | 100 | Plus |
sug-PB | 322 | CG3850-PB | 1..322 | 63..384 | 1751 | 100 | Plus |
ci-PB | 1279 | CG2125-PB | 291..483 | 93..277 | 465 | 46.7 | Plus |
ci-PA | 1397 | CG2125-PA | 409..601 | 93..277 | 465 | 46.7 | Plus |
lmd-PB | 866 | CG4677-PB | 333..584 | 53..276 | 463 | 39.5 | Plus |