Clone Sequence Records
BS01102.3prime Sequence
945 bp (806 high quality bases) assembled on 2005-11-30
> BS01102.3prime
ATGGTCTAGAAAGCTTCGTCACGTGAGAAACATATCCGGAAAATCGCTGT
GCAGCAGGTCGAATGGATACCCATCCAGAGCGGAGAACGAACTAATACAG
GCCGACGGCTGCTGATCGCTGGCAAAGTCGAAGGAATCCTTGGAACTCTG
GTCCAGTAATCGCAGACTGAGCTCCACATCCGACTTCTCCAGACCCGACA
TGGGCAGATCACCTCGGCAACCGGGCAACAGGGATTCCCCGCTGCCAGTG
AGTAGACTTCCATAGCCGGGACTTAGACAGGAGAGGGAATCCCCATCGGA
GGTATCCAGAAGCAGAGAGTCCAGGGCGCTGATTCCGTTCAATCCCACCA
GACTGTCCAGCTCCAGTCCCGGACTGCTACTGCTGCTGTGGCTGTTCGAT
GACGAGGAGAGCGATGCGTAGGCGGAGGAGGCAGGCGATCCAATCGAAGA
GGTGGCGTAGCACGACTCACCGGAACTTATCGGTGGTATCTGGGGCACTA
TCTTGGCCTGCTTTTGGCTCTGTCTTTTGCTCGCGGCGGAACTCTTCTTA
CCACTGCCCTTTGTCTTGGCTGGCTTCTTGGCAACTGGAACGGGTAGCTC
CACCTCGGCTTCCTCGTTCGCTTCCAAGTCCACTCTCGCCTCCCGATTGG
CACTCTCCTCCAGACACTCCCCTATAAATTCGCTTTCATAGCTGGGATCT
CGAATCGAGTCGGTCAGCATGGTGATGTACTTCATGGCCAGTCTCAGGGT
GGTGATTTTGGTCAGCTTCTCGTTGGTATTGGCCGCATCCTCGCCCTTGA
TCGCTTCGGGGAACACATGCCTCAGTGTCTCAAAGGGCGTGTTGATCTCA
CGCATTCTGGTTCGCTCCCTGGCATTCGCTGTTTTCCGACGGTATTTACT
CAGTGGCGGTGCTTTCGTCTTGGACTTGNTGGGTGCATTTTTCCT
BS01102.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5441-PA | 1155 | dei-RA | 364..1155 | 810..19 | 3960 | 100 | Minus |
CG5441-PA | 1155 | dei-RA | 229..357 | 945..817 | 601 | 98.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tx-RB | 2411 | CG5441-RB | 1188..2116 | 945..17 | 4574 | 99.6 | Minus |
tx-RA | 1652 | CG5441-RA | 429..1357 | 945..17 | 4574 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26447768..26448696 | 945..17 | 4544 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:34:55 has no hits.
BS01102.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:47 Download gff for
BS01102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dei-PA | 229..1155 | 19..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:43 Download gff for
BS01102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5441-PA | 229..1155 | 19..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:27:03 Download gff for
BS01102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tx-RA | 770..1707 | 8..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:55 Download gff for
BS01102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tx-RA | 429..1366 | 8..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:55 Download gff for
BS01102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26447768..26448705 | 8..945 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:27:03 Download gff for
BS01102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22273490..22274427 | 8..945 | 99 | | Minus |
BS01102.5prime Sequence
904 bp (764 high quality bases) assembled on 2005-11-30
> BS01102.5prime
GAAGTTATCAGTCGACATGAAGTCCAATACGTACGAACTGCACAACTACG
CCGATCTGAATGACATGGCCAGAGCGACGGACTCCAAGGATTCGCGCAAA
AGGAAGACGGCCAGTGCTCGGGGCGAGAAGTATTCCCTGCGACAGAAGCG
ACAAAAGAGGGGCTCCAACGAGGATGGGGAGTCAGCCAACCTGGCTGACT
TTCAACTAGAATTAGATCCCATAGCGGAGCCGGCTAGTAAATCGAGGAAA
AATGCACCCACCAAGTCCAAGACGAAAGCACCGCCACTGAGTAAATACCG
TCGGAAAACAGCGAATGCCAGGGAGCGAACCAGAATGCGTGAGATCAACA
CGGCCTTTGAGACACTGAGGCATTGTGTTCCCGAAGCGATCAAGGGCGAG
GATGCGGCCAATACCAACGAGAAGCTGACCAAAATCACCACCCTGAGACT
GGCCATGAAGTACATCACCATGCTGACCGACTCGATTCGAGATCCCAGCT
ATGAAAGCGAATTTATAGGGGAGTGTCTGGAGGAGAGTGCCAATCGGGAG
GCGAGAGTGGACTTGGAAGCGAACGAGGAAGCCGAGGTGGAGCTACCCGT
TCCAGTTGCCAAGAAGCCAGCCAAGACAAAGGGCAGTGGTAAGAAGAGTT
CCGCCGCGAGCAAAAGACAGAGCCAAAAGCAGGCCAAGATAGTGCCCCAG
ATACCACCGATAAGTTCCGGTGAGTCGTGCTACGCCACCTCTTCGATTGG
ATCGCCTGCCTCCTCCCGCTACGCATCGCTCTCCTCGTCATCGAACAGCC
ACAGCAGCAGTAGCAGTCCGGGACTGGAGCTGGACAGTCTGGTGGGATTG
AACGGAATCAGCGCCCTGNACTCTCTGCTTCTGGATACCTCCGATGGGGA
TTCC
BS01102.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5441-PA | 1155 | dei-RA | 1..888 | 17..904 | 4371 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tx-RB | 2411 | CG5441-RB | 960..1847 | 17..904 | 4399 | 99.7 | Plus |
tx-RA | 1652 | CG5441-RA | 201..1088 | 17..904 | 4399 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26447540..26448427 | 17..904 | 4399 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:41:46 has no hits.
BS01102.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:49 Download gff for
BS01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dei-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:45 Download gff for
BS01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5441-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:35:47 Download gff for
BS01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tx-RA | 542..1429 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:54 Download gff for
BS01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tx-RA | 201..1088 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:54 Download gff for
BS01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26447536..26448427 | 12..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:35:47 Download gff for
BS01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22273258..22274149 | 12..904 | 99 | | Plus |
BS01102.complete Sequence
1189 bp (1189 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634527
> BS01102.complete
GAAGTTATCAGTCGACATGAAGTCCAATACGTACGAACTGCACAACTACG
CCGATCTGAATGACATGGCCAGAGCGACGGACTCCAAGGATTCGCGCAAA
AGGAAGACGGCCAGTGCTCGGGGCGAGAAGTATTCCCTGCGACAGAAGCG
ACAAAAGAGGGGCTCCAACGAGGATGGGGAGTCAGCCAACCTGGCTGACT
TTCAACTAGAATTAGATCCCATAGCGGAGCCGGCTAGTAAATCGAGGAAA
AATGCACCCACCAAGTCCAAGACGAAAGCACCGCCACTGAGTAAATACCG
TCGGAAAACAGCGAATGCCAGGGAGCGAACCAGAATGCGTGAGATCAACA
CGGCCTTTGAGACACTGAGGCATTGTGTTCCCGAAGCGATCAAGGGCGAG
GATGCGGCCAATACCAACGAGAAGCTGACCAAAATCACCACCCTGAGACT
GGCCATGAAGTACATCACCATGCTGACCGACTCGATTCGAGATCCCAGCT
ATGAAAGCGAATTTATAGGGGAGTGTCTGGAGGAGAGTGCCAATCGGGAG
GCGAGAGTGGACTTGGAAGCGAACGAGGAAGCCGAGGTGGAGCTACCCGT
TCCAGTTGCCAAGAAGCCAGCCAAGACAAAGGGCAGTGGTAAGAAGAGTT
CCGCCGCGAGCAAAAGACAGAGCCAAAAGCAGGCCAAGATAGTGCCCCAG
ATACCACCGATAAGTTCCGGTGAGTCGTGCTACGCCACCTCTTCGATTGG
ATCGCCTGCCTCCTCCGCCTACGCATCGCTCTCCTCGTCATCGAACAGCC
ACAGCAGCAGTAGCAGTCCGGGACTGGAGCTGGACAGTCTGGTGGGATTG
AACGGAATCAGCGCCCTGGACTCTCTGCTTCTGGATACCTCCGATGGGGA
TTCCCTCTCCTGTCTAAGTCCCGGCTATGGAAGTCTACTCACTGGCAGCG
GGGAATCCCTGTTGCCCGGTTGCCGAGGTGATCTGCCCATGTCGGGTCTG
GAGAAGTCGGATGTGGAGCTCAGTCTGCGATTACTGGACCAGAGTTCCAA
GGATTCCTTCGACTTTGCCAGCGATCAGCAGCCGTCGGCCTGTATTAGTT
CGTTCTCCGCTCTGGATGGGTATCCATTCGACCTGCTGCACAGCGATTTT
CCGGATATGTTTCTCACGTGACGAAGCTTTCTAGACCAT
BS01102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tx-RB | 1155 | CG5441-PB | 1..1155 | 17..1171 | 5775 | 100 | Plus |
tx-RA | 1155 | CG5441-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tx-RB | 2411 | CG5441-RB | 960..2116 | 17..1173 | 5785 | 100 | Plus |
tx-RA | 1652 | CG5441-RA | 201..1357 | 17..1173 | 5785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26447540..26448696 | 17..1173 | 5785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:47:52 has no hits.
BS01102.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:02 Download gff for
BS01102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dei-RA | 1..1155 | 17..1171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:11 Download gff for
BS01102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dei-RA | 411..1576 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:22 Download gff for
BS01102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tx-RA | 542..1698 | 17..1173 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:02 Download gff for
BS01102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dei-RA | 411..1576 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:54 Download gff for
BS01102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tx-RA | 201..1357 | 17..1173 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:54 Download gff for
BS01102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26447540..26448696 | 17..1173 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:22 Download gff for
BS01102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22273262..22274418 | 17..1173 | 100 | | Plus |
BS01102.pep Sequence
Translation from 16 to 1170
> BS01102.pep
MKSNTYELHNYADLNDMARATDSKDSRKRKTASARGEKYSLRQKRQKRGS
NEDGESANLADFQLELDPIAEPASKSRKNAPTKSKTKAPPLSKYRRKTAN
ARERTRMREINTAFETLRHCVPEAIKGEDAANTNEKLTKITTLRLAMKYI
TMLTDSIRDPSYESEFIGECLEESANREARVDLEANEEAEVELPVPVAKK
PAKTKGSGKKSSAASKRQSQKQAKIVPQIPPISSGESCYATSSIGSPASS
AYASLSSSSNSHSSSSSPGLELDSLVGLNGISALDSLLLDTSDGDSLSCL
SPGYGSLLTGSGESLLPGCRGDLPMSGLEKSDVELSLRLLDQSSKDSFDF
ASDQQPSACISSFSALDGYPFDLLHSDFPDMFLT*
BS01102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tx-PB | 384 | CG5441-PB | 1..384 | 1..384 | 1931 | 100 | Plus |
tx-PA | 384 | CG5441-PA | 1..384 | 1..384 | 1931 | 100 | Plus |
cato-PA | 189 | CG7760-PA | 56..165 | 63..163 | 152 | 37.6 | Plus |