Clone BS01103 Report

Search the DGRC for BS01103

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:3
Vector:pDNR-Dual
Associated Gene/Transcriptp53-RA
Protein status:BS01103.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01103.3prime Sequence

930 bp (864 high quality bases) assembled on 2005-11-30

> BS01103.3prime
ATGGTCTAGAAAGCTTCGTCATGGCAGCTCGTAGGCACGTTTCTTAAGGC
TCAGCAATTTGTTGGCATGGCGACGTAGATTCTCTTGGTTGGGATTGCGC
AGGACTTCAGCCGCCGCCTCCTTAATCATGCCCTCGATGCTCTGCAGCAG
CCATTCCTTATTGGGGCACGTAATAGCCAGACGGTAATCGCCATCCGGTG
TCCGCGACACGTTCCACTCTGCGGCGGAGTCGTCGCAGTCTCGGCTATCA
TTGCTCTCCGTGTCCTCCGTCTTTATAGCAATGCACCGACGCACCTTGGA
CGGCTCATCTTCTTCGGCGGCTTCCGGCACGGACTTGCGCTTCTTGCTAT
TGAGCTGGCGTTCGTCTTGGATGCGATCCCGCTTGGGGCACGTACATATT
TTAACATGTATAACATGCTGTCCCACGATATCGCCGCATGCTTTCTCCAG
GCAGAAGACTAAGGAAGTTTCTTTTCGCCCGATACACGAGTTTTGGCAGA
CGAACTTGAAGGCCAGGGTCTGGCGCGTGAGCCCACTGCGGGTTACAGAC
CGGCTCATGTTCAGGGGGACTACAACGGAAAAACGCTCGGAAATTCCCTT
GCCCTGAGCATTTCCACAATATACACTGTTGGGATTCTCGCTGCGCAGCA
AGCTCTCGCGCATTTTTGCGTTATTGGCCGTCAAAGGCTCAACGCTAAGG
TGATTTTGACAGCGGACCACGGGAGCACTCACATCATTGGAGAAGCAAAG
GAACACACGCAAATTAAGTGGTTGGATGGGCATTTTAGACTTGAACTGAA
CGTCCACGTTGAAGGCCTTGTTCATCCGGATGTAGAGCTTGTTCAGCGGA
ATCGAGTACATCCAAAGAGACTTGGGCGGCTCATCCAGAAACATGCTGAA
AGCATAACCACCGATGTTGTGATTCTCTAG

BS01103.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33336-PA 1158 p53-RA 277..1158 900..19 4385 99.8 Minus
CG33336-PB 1488 p53-RB 607..1488 900..19 4385 99.8 Minus
CG33336-PA 1158 p53-RA 247..273 930..904 135 100 Minus
CG33336-PB 1488 p53-RB 577..603 930..904 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RE 1324 CG33336-RE 105..1017 930..18 4505 99.7 Minus
p53-RC 2095 CG33336-RC 876..1788 930..18 4505 99.7 Minus
p53-RB 1870 CG33336-RB 651..1563 930..18 4505 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23050047..23050442 42..437 1980 100 Plus
3R 32079331 3R 23050504..23050750 437..683 1235 100 Plus
3R 32079331 3R 23050815..23051061 684..930 1175 98.4 Plus
Blast to na_te.dros performed on 2015-02-10 23:10:42 has no hits.

BS01103.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:50 Download gff for BS01103.3prime
Subject Subject Range Query Range Percent Splice Strand
p53-PB 577..1488 19..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:46 Download gff for BS01103.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33336-PB 577..1488 19..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:34:54 Download gff for BS01103.3prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 651..1567 12..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:31:36 Download gff for BS01103.3prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 651..1567 12..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:31:36 Download gff for BS01103.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23050815..23051061 684..930 98   Plus
3R 23050047..23050441 42..436 100 <- Plus
3R 23050504..23050750 437..683 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:34:54 Download gff for BS01103.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18875769..18876163 42..436 100 <- Plus
arm_3R 18876226..18876472 437..683 100 <- Plus
arm_3R 18876537..18876783 684..930 98   Plus

BS01103.5prime Sequence

838 bp (765 high quality bases) assembled on 2005-11-30

> BS01103.5prime
GAAGTTATCAGTCGACATGTATATATCACAGCCAATGTCGTGGCACAAAG
AAAGCACTGATTCCGAGGATGACTCCACGGAGGTCGATATCAAGGAGGAT
ATTCCGAAAACGGTGGAGGTATCGGGATCGGAATTGACCACGGAACCCAT
GGCCTTCTTGCAGGGATTAAACTCCGGGAATCTGATGCAGTTCAGCCAGC
AATCCGTGCTGCGCGAAATGATGCTGCAGGACATTCAGATCCAGGCGAAC
ACGCTGCCCAAGCTAGAGAATCACAACATCGGTGGTTATTGCTTCAGCAT
GGTTCTGGATGAGCCGCCCAAGTCTCTTTGGATGTACTCGATTCCGCTGA
ACAAGCTCTACATCCGGATGAACAAGGCCTTCAACGTGGACGTTCAGTTC
AAGTCTAAAATGCCCATCCAACCACTTAATTTGCGTGTGTTCCTTTGCTT
CTCCAATGATGTGAGTGCTCCCGTGGTCCGCTGTCAAAATCACCTTAGCG
TTGAGCCTTTGACGGCCAATAACGCAAAAATGCGCGAGAGCTTGCTGCGC
AGCGAGAATCCCAACAGTGTATATTGTGGAAATGCTCAGGGCAAGGGAAT
TTCCGAGCGTTTTTCCGTTGTAGTCCCCCTGAACATGAGCCGGTCTGTAA
CCCGCAGTGGGCTCACGCGCCAGACCCTGGCCTTCAAGTTCGTCTGCCAA
AACTCGTGTATCGGGCGAAAAGAAACTTCCTTAGTCTTCTGCCTGGAGAA
AGCATGCGGCGATATCGTGGGACAGCATGTTATACATGTTAAAATATGTA
CGTGCCCCCAGCGGGATCGCATCCAAGACGAACGCCAG

BS01103.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33336-PA 1158 p53-RA 1..822 17..838 4085 99.8 Plus
CG33336-PB 1488 p53-RB 368..1152 54..838 3900 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RC 2095 CG33336-RC 630..1451 17..838 4095 99.9 Plus
p53-RA 1577 CG33336-RA 112..933 17..838 4095 99.9 Plus
p53-RB 1870 CG33336-RB 442..1226 54..838 3910 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23050815..23051127 509..197 1565 100 Minus
3R 32079331 3R 23050504..23050750 756..510 1235 100 Minus
3R 32079331 3R 23053118..23053201 136..53 420 100 Minus
3R 32079331 3R 23050360..23050442 838..756 400 98.8 Minus
3R 32079331 3R 23053357..23053394 54..17 190 100 Minus
3R 32079331 3R 23053012..23053048 172..136 185 100 Minus
Blast to na_te.dros performed on 2015-02-04 04:07:07 has no hits.

BS01103.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:51 Download gff for BS01103.5prime
Subject Subject Range Query Range Percent Splice Strand
p53-PA 1..822 17..838 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:47 Download gff for BS01103.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33336-PA 1..822 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:07:36 Download gff for BS01103.5prime
Subject Subject Range Query Range Percent Splice Strand
p53-RA 112..933 17..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:49:23 Download gff for BS01103.5prime
Subject Subject Range Query Range Percent Splice Strand
p53-RA 112..933 17..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:49:23 Download gff for BS01103.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23050360..23050441 757..838 98 <- Minus
3R 23050504..23050750 510..756 100 <- Minus
3R 23050815..23051124 200..509 100 <- Minus
3R 23052922..23052948 173..199 100 <- Minus
3R 23053012..23053048 136..172 100 <- Minus
3R 23053119..23053199 55..135 100 <- Minus
3R 23053357..23053394 17..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:07:36 Download gff for BS01103.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18876082..18876163 757..838 98 <- Minus
arm_3R 18876226..18876472 510..756 100 <- Minus
arm_3R 18876537..18876846 200..509 100 <- Minus
arm_3R 18878644..18878670 173..199 100 <- Minus
arm_3R 18878734..18878770 136..172 100 <- Minus
arm_3R 18878841..18878921 55..135 100 <- Minus
arm_3R 18879079..18879116 17..54 100   Minus

BS01103.complete Sequence

1192 bp (1192 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634528

> BS01103.complete
GAAGTTATCAGTCGACATGTATATATCACAGCCAATGTCGTGGCACAAAG
AAAGCACTGATTCCGAGGATGACTCCACGGAGGTCGATATCAAGGAGGAT
ATTCCGAAAACGGTGGAGGTATCGGGATCGGAATTGACCACGGAACCCAT
GGCCTTCTTGCAGGGATTAAACTCCGGGAATCTGATGCAGTTCAGCCAGC
AATCCGTGCTGCGCGAAATGATGCTGCAGGACATTCAGATCCAGGCGAAC
ACGCTGCCCAAGCTAGAGAATCACAACATCGGTGGTTATTGCTTCAGCAT
GGTTCTGGATGAGCCGCCCAAGTCTCTTTGGATGTACTCGATTCCGCTGA
ACAAGCTCTACATCCGGATGAACAAGGCCTTCAACGTGGACGTTCAGTTC
AAGTCTAAAATGCCCATCCAACCACTTAATTTGCGTGTGTTCCTTTGCTT
CTCCAATGATGTGAGTGCTCCCGTGGTCCGCTGTCAAAATCACCTTAGCG
TTGAGCCTTTGACGGCCAATAACGCAAAAATGCGCGAGAGCTTGCTGCGC
AGCGAGAATCCCAACAGTGTATATTGTGGAAATGCTCAGGGCAAGGGAAT
TTCCGAGCGTTTTTCCGTTGTAGTCCCCCTGAACATGAGCCGGTCTGTAA
CCCGCAGTGGGCTCACGCGCCAGACCCTGGCCTTCAAGTTCGTCTGCCAA
AACTCGTGTATCGGGCGAAAAGAAACTTCCTTAGTCTTCTGCCTGGAGAA
AGCATGCGGCGATATCGTGGGACAGCATGTTATACATGTTAAAATATGTA
CGTGCCCCAAGCGGGATCGCATCCAAGACGAACGCCAGCTCAATAGCAAG
AAGCGCAAGTCCGTGCCGGAAGCCGCCGAAGAAGATGAGCCGTCCAAGGT
GCGTCGGTGCATTGCTATAAAGACGGAGGACACGGAGAGCAATGATAGCC
GAGACTGCGACGACTCCGCCGCAGAGTGGAACGTGTCGCGGACACCGGAT
GGCGATTACCGTCTGGCTATTACGTGCCCCAATAAGGAATGGCTGCTGCA
GAGCATCGAGGGCATGATTAAGGAGGCGGCGGCTGAAGTCCTGCGCAATC
CCAACCAAGAGAATCTACGTCGCCATGCCAACAAATTGCTGAGCCTTAAG
AAACGTGCCTACGAGCTGCCATGACGAAGCTTTCTAGACCAT

BS01103.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RC 1158 CG33336-PC 1..1158 17..1174 5790 100 Plus
p53-RA 1158 CG33336-PA 1..1158 17..1174 5790 100 Plus
p53-RB 1488 CG33336-PB 368..1488 54..1174 5605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RC 2095 CG33336-RC 630..1788 17..1175 5795 100 Plus
p53-RA 1577 CG33336-RA 112..1270 17..1175 5795 100 Plus
p53-RB 1870 CG33336-RB 442..1563 54..1175 5610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23050047..23050442 1151..756 1980 100 Minus
3R 32079331 3R 23050815..23051127 509..197 1565 100 Minus
3R 32079331 3R 23050504..23050750 756..510 1235 100 Minus
3R 32079331 3R 23053118..23053201 136..53 420 100 Minus
3R 32079331 3R 23053357..23053394 54..17 190 100 Minus
3R 32079331 3R 23053012..23053048 172..136 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:26:35 has no hits.

BS01103.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:12 Download gff for BS01103.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RA 1..1158 17..1174 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:23 Download gff for BS01103.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RA 96..1258 17..1181 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:09 Download gff for BS01103.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RA 112..1270 17..1176 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:12 Download gff for BS01103.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RA 96..1258 17..1181 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:48 Download gff for BS01103.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RA 112..1270 17..1176 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:48 Download gff for BS01103.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23050815..23051124 200..509 100 <- Minus
3R 23052922..23052948 173..199 100 <- Minus
3R 23053012..23053048 136..172 100 <- Minus
3R 23053119..23053199 55..135 100 <- Minus
3R 23053357..23053394 17..54 100   Minus
3R 23049963..23049987 1152..1176 96 <- Minus
3R 23050047..23050441 757..1151 100 <- Minus
3R 23050504..23050750 510..756 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:09 Download gff for BS01103.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18875685..18875709 1152..1176 96 <- Minus
arm_3R 18875769..18876163 757..1151 100 <- Minus
arm_3R 18876226..18876472 510..756 100 <- Minus
arm_3R 18876537..18876846 200..509 100 <- Minus
arm_3R 18878644..18878670 173..199 100 <- Minus
arm_3R 18878734..18878770 136..172 100 <- Minus
arm_3R 18878841..18878921 55..135 100 <- Minus
arm_3R 18879079..18879116 17..54 100   Minus

BS01103.pep Sequence

Translation from 16 to 1173

> BS01103.pep
MYISQPMSWHKESTDSEDDSTEVDIKEDIPKTVEVSGSELTTEPMAFLQG
LNSGNLMQFSQQSVLREMMLQDIQIQANTLPKLENHNIGGYCFSMVLDEP
PKSLWMYSIPLNKLYIRMNKAFNVDVQFKSKMPIQPLNLRVFLCFSNDVS
APVVRCQNHLSVEPLTANNAKMRESLLRSENPNSVYCGNAQGKGISERFS
VVVPLNMSRSVTRSGLTRQTLAFKFVCQNSCIGRKETSLVFCLEKACGDI
VGQHVIHVKICTCPKRDRIQDERQLNSKKRKSVPEAAEEDEPSKVRRCIA
IKTEDTESNDSRDCDDSAAEWNVSRTPDGDYRLAITCPNKEWLLQSIEGM
IKEAAAEVLRNPNQENLRRHANKLLSLKKRAYELP*

BS01103.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
p53-PC 385 CG33336-PC 1..385 1..385 2008 100 Plus
p53-PA 385 CG33336-PA 1..385 1..385 2008 100 Plus
p53-PB 495 CG33336-PB 122..495 12..385 1935 99.5 Plus
p53-PE 334 CG33336-PE 10..334 61..385 1695 99.7 Plus