Clone Sequence Records
BS01103.3prime Sequence
930 bp (864 high quality bases) assembled on 2005-11-30
> BS01103.3prime
ATGGTCTAGAAAGCTTCGTCATGGCAGCTCGTAGGCACGTTTCTTAAGGC
TCAGCAATTTGTTGGCATGGCGACGTAGATTCTCTTGGTTGGGATTGCGC
AGGACTTCAGCCGCCGCCTCCTTAATCATGCCCTCGATGCTCTGCAGCAG
CCATTCCTTATTGGGGCACGTAATAGCCAGACGGTAATCGCCATCCGGTG
TCCGCGACACGTTCCACTCTGCGGCGGAGTCGTCGCAGTCTCGGCTATCA
TTGCTCTCCGTGTCCTCCGTCTTTATAGCAATGCACCGACGCACCTTGGA
CGGCTCATCTTCTTCGGCGGCTTCCGGCACGGACTTGCGCTTCTTGCTAT
TGAGCTGGCGTTCGTCTTGGATGCGATCCCGCTTGGGGCACGTACATATT
TTAACATGTATAACATGCTGTCCCACGATATCGCCGCATGCTTTCTCCAG
GCAGAAGACTAAGGAAGTTTCTTTTCGCCCGATACACGAGTTTTGGCAGA
CGAACTTGAAGGCCAGGGTCTGGCGCGTGAGCCCACTGCGGGTTACAGAC
CGGCTCATGTTCAGGGGGACTACAACGGAAAAACGCTCGGAAATTCCCTT
GCCCTGAGCATTTCCACAATATACACTGTTGGGATTCTCGCTGCGCAGCA
AGCTCTCGCGCATTTTTGCGTTATTGGCCGTCAAAGGCTCAACGCTAAGG
TGATTTTGACAGCGGACCACGGGAGCACTCACATCATTGGAGAAGCAAAG
GAACACACGCAAATTAAGTGGTTGGATGGGCATTTTAGACTTGAACTGAA
CGTCCACGTTGAAGGCCTTGTTCATCCGGATGTAGAGCTTGTTCAGCGGA
ATCGAGTACATCCAAAGAGACTTGGGCGGCTCATCCAGAAACATGCTGAA
AGCATAACCACCGATGTTGTGATTCTCTAG
BS01103.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33336-PA | 1158 | p53-RA | 277..1158 | 900..19 | 4385 | 99.8 | Minus |
CG33336-PB | 1488 | p53-RB | 607..1488 | 900..19 | 4385 | 99.8 | Minus |
CG33336-PA | 1158 | p53-RA | 247..273 | 930..904 | 135 | 100 | Minus |
CG33336-PB | 1488 | p53-RB | 577..603 | 930..904 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RE | 1324 | CG33336-RE | 105..1017 | 930..18 | 4505 | 99.7 | Minus |
p53-RC | 2095 | CG33336-RC | 876..1788 | 930..18 | 4505 | 99.7 | Minus |
p53-RB | 1870 | CG33336-RB | 651..1563 | 930..18 | 4505 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23050047..23050442 | 42..437 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 23050504..23050750 | 437..683 | 1235 | 100 | Plus |
3R | 32079331 | 3R | 23050815..23051061 | 684..930 | 1175 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:10:42 has no hits.
BS01103.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:50 Download gff for
BS01103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-PB | 577..1488 | 19..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:46 Download gff for
BS01103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33336-PB | 577..1488 | 19..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:34:54 Download gff for
BS01103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 651..1567 | 12..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:31:36 Download gff for
BS01103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 651..1567 | 12..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:31:36 Download gff for
BS01103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23050815..23051061 | 684..930 | 98 | | Plus |
3R | 23050047..23050441 | 42..436 | 100 | <- | Plus |
3R | 23050504..23050750 | 437..683 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:34:54 Download gff for
BS01103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18875769..18876163 | 42..436 | 100 | <- | Plus |
arm_3R | 18876226..18876472 | 437..683 | 100 | <- | Plus |
arm_3R | 18876537..18876783 | 684..930 | 98 | | Plus |
BS01103.5prime Sequence
838 bp (765 high quality bases) assembled on 2005-11-30
> BS01103.5prime
GAAGTTATCAGTCGACATGTATATATCACAGCCAATGTCGTGGCACAAAG
AAAGCACTGATTCCGAGGATGACTCCACGGAGGTCGATATCAAGGAGGAT
ATTCCGAAAACGGTGGAGGTATCGGGATCGGAATTGACCACGGAACCCAT
GGCCTTCTTGCAGGGATTAAACTCCGGGAATCTGATGCAGTTCAGCCAGC
AATCCGTGCTGCGCGAAATGATGCTGCAGGACATTCAGATCCAGGCGAAC
ACGCTGCCCAAGCTAGAGAATCACAACATCGGTGGTTATTGCTTCAGCAT
GGTTCTGGATGAGCCGCCCAAGTCTCTTTGGATGTACTCGATTCCGCTGA
ACAAGCTCTACATCCGGATGAACAAGGCCTTCAACGTGGACGTTCAGTTC
AAGTCTAAAATGCCCATCCAACCACTTAATTTGCGTGTGTTCCTTTGCTT
CTCCAATGATGTGAGTGCTCCCGTGGTCCGCTGTCAAAATCACCTTAGCG
TTGAGCCTTTGACGGCCAATAACGCAAAAATGCGCGAGAGCTTGCTGCGC
AGCGAGAATCCCAACAGTGTATATTGTGGAAATGCTCAGGGCAAGGGAAT
TTCCGAGCGTTTTTCCGTTGTAGTCCCCCTGAACATGAGCCGGTCTGTAA
CCCGCAGTGGGCTCACGCGCCAGACCCTGGCCTTCAAGTTCGTCTGCCAA
AACTCGTGTATCGGGCGAAAAGAAACTTCCTTAGTCTTCTGCCTGGAGAA
AGCATGCGGCGATATCGTGGGACAGCATGTTATACATGTTAAAATATGTA
CGTGCCCCCAGCGGGATCGCATCCAAGACGAACGCCAG
BS01103.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33336-PA | 1158 | p53-RA | 1..822 | 17..838 | 4085 | 99.8 | Plus |
CG33336-PB | 1488 | p53-RB | 368..1152 | 54..838 | 3900 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RC | 2095 | CG33336-RC | 630..1451 | 17..838 | 4095 | 99.9 | Plus |
p53-RA | 1577 | CG33336-RA | 112..933 | 17..838 | 4095 | 99.9 | Plus |
p53-RB | 1870 | CG33336-RB | 442..1226 | 54..838 | 3910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23050815..23051127 | 509..197 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 23050504..23050750 | 756..510 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 23053118..23053201 | 136..53 | 420 | 100 | Minus |
3R | 32079331 | 3R | 23050360..23050442 | 838..756 | 400 | 98.8 | Minus |
3R | 32079331 | 3R | 23053357..23053394 | 54..17 | 190 | 100 | Minus |
3R | 32079331 | 3R | 23053012..23053048 | 172..136 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:07:07 has no hits.
BS01103.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:51 Download gff for
BS01103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:47 Download gff for
BS01103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33336-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:07:36 Download gff for
BS01103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 112..933 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:49:23 Download gff for
BS01103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 112..933 | 17..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:49:23 Download gff for
BS01103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23050360..23050441 | 757..838 | 98 | <- | Minus |
3R | 23050504..23050750 | 510..756 | 100 | <- | Minus |
3R | 23050815..23051124 | 200..509 | 100 | <- | Minus |
3R | 23052922..23052948 | 173..199 | 100 | <- | Minus |
3R | 23053012..23053048 | 136..172 | 100 | <- | Minus |
3R | 23053119..23053199 | 55..135 | 100 | <- | Minus |
3R | 23053357..23053394 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:07:36 Download gff for
BS01103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18876082..18876163 | 757..838 | 98 | <- | Minus |
arm_3R | 18876226..18876472 | 510..756 | 100 | <- | Minus |
arm_3R | 18876537..18876846 | 200..509 | 100 | <- | Minus |
arm_3R | 18878644..18878670 | 173..199 | 100 | <- | Minus |
arm_3R | 18878734..18878770 | 136..172 | 100 | <- | Minus |
arm_3R | 18878841..18878921 | 55..135 | 100 | <- | Minus |
arm_3R | 18879079..18879116 | 17..54 | 100 | | Minus |
BS01103.complete Sequence
1192 bp (1192 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634528
> BS01103.complete
GAAGTTATCAGTCGACATGTATATATCACAGCCAATGTCGTGGCACAAAG
AAAGCACTGATTCCGAGGATGACTCCACGGAGGTCGATATCAAGGAGGAT
ATTCCGAAAACGGTGGAGGTATCGGGATCGGAATTGACCACGGAACCCAT
GGCCTTCTTGCAGGGATTAAACTCCGGGAATCTGATGCAGTTCAGCCAGC
AATCCGTGCTGCGCGAAATGATGCTGCAGGACATTCAGATCCAGGCGAAC
ACGCTGCCCAAGCTAGAGAATCACAACATCGGTGGTTATTGCTTCAGCAT
GGTTCTGGATGAGCCGCCCAAGTCTCTTTGGATGTACTCGATTCCGCTGA
ACAAGCTCTACATCCGGATGAACAAGGCCTTCAACGTGGACGTTCAGTTC
AAGTCTAAAATGCCCATCCAACCACTTAATTTGCGTGTGTTCCTTTGCTT
CTCCAATGATGTGAGTGCTCCCGTGGTCCGCTGTCAAAATCACCTTAGCG
TTGAGCCTTTGACGGCCAATAACGCAAAAATGCGCGAGAGCTTGCTGCGC
AGCGAGAATCCCAACAGTGTATATTGTGGAAATGCTCAGGGCAAGGGAAT
TTCCGAGCGTTTTTCCGTTGTAGTCCCCCTGAACATGAGCCGGTCTGTAA
CCCGCAGTGGGCTCACGCGCCAGACCCTGGCCTTCAAGTTCGTCTGCCAA
AACTCGTGTATCGGGCGAAAAGAAACTTCCTTAGTCTTCTGCCTGGAGAA
AGCATGCGGCGATATCGTGGGACAGCATGTTATACATGTTAAAATATGTA
CGTGCCCCAAGCGGGATCGCATCCAAGACGAACGCCAGCTCAATAGCAAG
AAGCGCAAGTCCGTGCCGGAAGCCGCCGAAGAAGATGAGCCGTCCAAGGT
GCGTCGGTGCATTGCTATAAAGACGGAGGACACGGAGAGCAATGATAGCC
GAGACTGCGACGACTCCGCCGCAGAGTGGAACGTGTCGCGGACACCGGAT
GGCGATTACCGTCTGGCTATTACGTGCCCCAATAAGGAATGGCTGCTGCA
GAGCATCGAGGGCATGATTAAGGAGGCGGCGGCTGAAGTCCTGCGCAATC
CCAACCAAGAGAATCTACGTCGCCATGCCAACAAATTGCTGAGCCTTAAG
AAACGTGCCTACGAGCTGCCATGACGAAGCTTTCTAGACCAT
BS01103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RC | 1158 | CG33336-PC | 1..1158 | 17..1174 | 5790 | 100 | Plus |
p53-RA | 1158 | CG33336-PA | 1..1158 | 17..1174 | 5790 | 100 | Plus |
p53-RB | 1488 | CG33336-PB | 368..1488 | 54..1174 | 5605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RC | 2095 | CG33336-RC | 630..1788 | 17..1175 | 5795 | 100 | Plus |
p53-RA | 1577 | CG33336-RA | 112..1270 | 17..1175 | 5795 | 100 | Plus |
p53-RB | 1870 | CG33336-RB | 442..1563 | 54..1175 | 5610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23050047..23050442 | 1151..756 | 1980 | 100 | Minus |
3R | 32079331 | 3R | 23050815..23051127 | 509..197 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 23050504..23050750 | 756..510 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 23053118..23053201 | 136..53 | 420 | 100 | Minus |
3R | 32079331 | 3R | 23053357..23053394 | 54..17 | 190 | 100 | Minus |
3R | 32079331 | 3R | 23053012..23053048 | 172..136 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:26:35 has no hits.
BS01103.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:12 Download gff for
BS01103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 1..1158 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:23 Download gff for
BS01103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 96..1258 | 17..1181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:09 Download gff for
BS01103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 112..1270 | 17..1176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:12 Download gff for
BS01103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 96..1258 | 17..1181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:48 Download gff for
BS01103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 112..1270 | 17..1176 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:48 Download gff for
BS01103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23050815..23051124 | 200..509 | 100 | <- | Minus |
3R | 23052922..23052948 | 173..199 | 100 | <- | Minus |
3R | 23053012..23053048 | 136..172 | 100 | <- | Minus |
3R | 23053119..23053199 | 55..135 | 100 | <- | Minus |
3R | 23053357..23053394 | 17..54 | 100 | | Minus |
3R | 23049963..23049987 | 1152..1176 | 96 | <- | Minus |
3R | 23050047..23050441 | 757..1151 | 100 | <- | Minus |
3R | 23050504..23050750 | 510..756 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:09 Download gff for
BS01103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18875685..18875709 | 1152..1176 | 96 | <- | Minus |
arm_3R | 18875769..18876163 | 757..1151 | 100 | <- | Minus |
arm_3R | 18876226..18876472 | 510..756 | 100 | <- | Minus |
arm_3R | 18876537..18876846 | 200..509 | 100 | <- | Minus |
arm_3R | 18878644..18878670 | 173..199 | 100 | <- | Minus |
arm_3R | 18878734..18878770 | 136..172 | 100 | <- | Minus |
arm_3R | 18878841..18878921 | 55..135 | 100 | <- | Minus |
arm_3R | 18879079..18879116 | 17..54 | 100 | | Minus |
BS01103.pep Sequence
Translation from 16 to 1173
> BS01103.pep
MYISQPMSWHKESTDSEDDSTEVDIKEDIPKTVEVSGSELTTEPMAFLQG
LNSGNLMQFSQQSVLREMMLQDIQIQANTLPKLENHNIGGYCFSMVLDEP
PKSLWMYSIPLNKLYIRMNKAFNVDVQFKSKMPIQPLNLRVFLCFSNDVS
APVVRCQNHLSVEPLTANNAKMRESLLRSENPNSVYCGNAQGKGISERFS
VVVPLNMSRSVTRSGLTRQTLAFKFVCQNSCIGRKETSLVFCLEKACGDI
VGQHVIHVKICTCPKRDRIQDERQLNSKKRKSVPEAAEEDEPSKVRRCIA
IKTEDTESNDSRDCDDSAAEWNVSRTPDGDYRLAITCPNKEWLLQSIEGM
IKEAAAEVLRNPNQENLRRHANKLLSLKKRAYELP*
BS01103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-PC | 385 | CG33336-PC | 1..385 | 1..385 | 2008 | 100 | Plus |
p53-PA | 385 | CG33336-PA | 1..385 | 1..385 | 2008 | 100 | Plus |
p53-PB | 495 | CG33336-PB | 122..495 | 12..385 | 1935 | 99.5 | Plus |
p53-PE | 334 | CG33336-PE | 10..334 | 61..385 | 1695 | 99.7 | Plus |