Clone BS01108 Report

Search the DGRC for BS01108

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptZif-RA
Protein status:BS01108.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01108.3prime Sequence

894 bp (813 high quality bases) assembled on 2005-11-30

> BS01108.3prime
ATGGTCTAGAAAGCTTCGTCAGTGAGCTTGAATTCGGATCTCGTTCCCGC
CCCCCTGCTCGGCCACCATTTCCACCTTCATGCTCTCGGCCAGCATTACG
GCGTTCTGGTGCAGTTTGGTCTCCTCGTGCTGGCGCATGTGATGCAGCAG
ACGGAAGTCCTTGTTGCAATAATCGCAGCGGTACAGTTTGATGTCCGAGT
GGATGAGCTCGTGCTTGGTCAGGGAGTGAGCGTAGGCAAACGCTTTGTCG
CACACCTTGCACACGTAGGGCTTGATGCCACGGTGAACATTTTCATGAGA
CTTGAGAACACTTTCGTAGAAGAATTGACGACTGCAGAAGCTGCACTTAT
AGGGTTTGCTGCCCGTGTGGGAGTACATGTGCTTCCTCAGTTGCTCGCGC
ACCTGGAACTTGGCATCGCATAGTTCGCATGCATATTGGCAGATGCCGTC
ATGGCGTCTGCGATGCTCCATCATCCGGCCGCGCTTTTCGTAAAAGTTTC
CGCAGACGTCGCAGATATAGCCACCCTTCTCAGTGCCGTCCGATGTTGTT
AGGGAGTTTAATCCGCGACGAACCCGGCCGCGCCGCGCCTTCAGGCTTGC
CTTGGCCGCCTCCTGCAGCGCCAACTGCTGCGATGGTGTCTCTTCGTACT
GCTTCTCAGACTCCAGGACGATCTCGGTCTGATCGGAGTTCATCTCGATG
GTGTAGTTGTCCTCCAAGTACTCGATGGTGTCGCCAATGCACTCCTGCTG
ATCGCTGGTGTCCACTTCCAAGTACTCCTCGTGCCCCTTTTCTTCCTGGT
GCTCCTCTTCCCCGGTGGTGGTCTCCTCCCAGATGTACATCTCCTCGTCG
CATTGCTGCTGCGAGCCGTCCTCCTCCTTGATCATCATCACATC

BS01108.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10267-PA 1167 CG10267-RA 292..1167 894..19 4330 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Zif-RC 1455 CG10267-RC 431..1308 894..17 4360 99.8 Minus
Zif-RB 1394 CG10267-RB 370..1247 894..17 4360 99.8 Minus
Zif-RA 1463 CG10267-RA 439..1316 894..17 4360 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6457640..6458109 894..425 2320 99.6 Minus
3R 32079331 3R 6458403..6458675 289..17 1365 100 Minus
3R 32079331 3R 6458167..6458301 424..290 675 100 Minus
Blast to na_te.dros performed on 2015-01-31 15:21:09 has no hits.

BS01108.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:59 Download gff for BS01108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10267-PA 292..1167 19..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:57 Download gff for BS01108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10267-PA 292..1167 19..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:25:58 Download gff for BS01108.3prime
Subject Subject Range Query Range Percent Splice Strand
Zif-RA 439..1316 17..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:41:55 Download gff for BS01108.3prime
Subject Subject Range Query Range Percent Splice Strand
Zif-RA 439..1316 17..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:41:55 Download gff for BS01108.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6457640..6458109 425..894 99 -> Minus
3R 6458167..6458301 290..424 100 -> Minus
3R 6458403..6458675 17..289 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:25:58 Download gff for BS01108.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2284125..2284397 17..289 100   Minus
arm_3R 2283362..2283831 425..894 99 -> Minus
arm_3R 2283889..2284023 290..424 100 -> Minus

BS01108.5prime Sequence

787 bp (759 high quality bases) assembled on 2005-11-30

> BS01108.5prime
GAAGTTATCAGTCGACATGCGCGTCGAGCTTACCCCACAGACGTGCCGGG
TCTGCCTGGCGCAGAGTGAGCGACTGCAGCGCCTAGACGAGATCCGCGAG
GAAGGCGAGGAATCGCCGAACGAGATGTTGATTCAACTTTTGGGAGTCTC
ATACAGCAATCTGAACGACAGAGAACACATACCCGATGGCATCTGCAAGT
CCTGCAAGGTCGAACTCAACATGGCCTACCAGTTTCGCGAGAAGGCGCTG
CGCAAGCAGATGGAGATTGAGGAGTACTGCCGGGAACTGGGCTTGCTGGA
CGAATCAGATGTGATGATGATCAAGGAGGAGGACGGCTCGCAGCAGCAAT
GCGACGAGGAGATGTACATCCTGGAGGAGACCACCACCGGGGAAGAGGAG
CACCAGGAAGAAAAGGGGCACGAGGAGTACTTGGAAGTGGACACCAGCGA
TCAGCAGGAGTGCATTGGCGACACCATCGAGTACTTGGAGGACAACTACA
CCATCGAGATGAACTCCGATCAGACCGAGATCGTCCTGGAGTCTGAGAAG
CAGTACGAAGAGACACCATCGCAGCAGTTGGCGCTGCAGGAGGCGGCCAA
GGCAAGCCTGAAGGCGCGGCGCGGCCGGGTTCGTCGCGGATTAAACTCCC
TAACAACATCGGACGGCACTGAGAAGGGTGGCTATATCTGCGACGTCTGC
GGAAACTTTTACGAAAAGCGCGGCCGGATGATGGAGCATCGCAGACGCCA
TGACGGCATCTGCCCATATGCATGCGAACTATGCGAT

BS01108.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10267-PA 1167 CG10267-RA 1..771 17..787 3830 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Zif-RC 1455 CG10267-RC 140..910 17..787 3840 99.9 Plus
Zif-RB 1394 CG10267-RB 79..849 17..787 3840 99.9 Plus
Zif-RA 1463 CG10267-RA 148..918 17..787 3840 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6457493..6458109 161..777 3070 99.8 Plus
3R 32079331 3R 6457287..6457430 17..160 720 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:37:06 has no hits.

BS01108.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:00 Download gff for BS01108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10267-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:58 Download gff for BS01108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10267-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:50:42 Download gff for BS01108.5prime
Subject Subject Range Query Range Percent Splice Strand
Zif-RA 144..918 9..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:31:20 Download gff for BS01108.5prime
Subject Subject Range Query Range Percent Splice Strand
Zif-RA 144..918 9..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:31:20 Download gff for BS01108.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6457283..6457430 9..160 97 -> Plus
3R 6457493..6458118 161..786 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:50:42 Download gff for BS01108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2283005..2283152 9..160 97 -> Plus
arm_3R 2283215..2283840 161..786 99   Plus

BS01108.complete Sequence

1201 bp (1201 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634530

> BS01108.complete
GAAGTTATCAGTCGACATGCGCGTCGAGCTTACCCCACAGACGTGCCGGG
TCTGCCTGGCGCAGAGTGAGCGACTGCAGCGCCTAGACGAGATCCGCGAG
GAAGGCGAGGAATCGCCGAACGAGATGTTGATTCAACTTTTGGGAGTCTC
ATACAGCAATCTGAACGACAGAGAACACATACCCGATGGCATCTGCAAGT
CCTGCAAGGTCGAACTCAACATGGCCTACCAGTTTCGCGAGAAGGCGCTG
CGCAAGCAGATGGAGATTGAGGAGTACTGCCGGGAACTGGGCTTGCTGGA
CGAATCAGATGTGATGATGATCAAGGAGGAGGACGGCTCGCAGCAGCAAT
GCGACGAGGAGATGTACATCCTGGAGGAGACCACCACCGGGGAAGAGGAG
CACCAGGAAGAAAAGGGGCACGAGGAGTACTTGGAAGTGGACACCAGCGA
TCAGCAGGAGTGCATTGGCGACACCATCGAGTACTTGGAGGACAACTACA
CCATCGAGATGAACTCCGATCAGACCGAGATCGTCCTGGAGTCTGAGAAG
CAGTACGAAGAGACACCATCGCAGCAGTTGGCGCTGCAGGAGGCGGCCAA
GGCAAGCCTGAAGGCGCGGCGCGGCCGGGTTCGTCGCGGATTAAACTCCC
TAACAACATCGGACGGCACTGAGAAGGGTGGCTATATCTGCGACGTCTGC
GGAAACTTTTACGAAAAGCGCGGCCGGATGATGGAGCATCGCAGACGCCA
TGACGGCATCTGCCAATATGCATGCGAACTATGCGATGCCAAGTTCCAGG
TGCGCGAGCAACTGAGGAAGCACATGTACTCCCACACGGGCAGCAAACCC
TATAAGTGCAGCTTCTGCAGTCGTCAATTCTTCTACGAAAGTGTTCTCAA
GTCTCATGAAAATGTTCACCGTGGCATCAAGCCCTACGTGTGCAAGGTGT
GCGACAAAGCGTTTGCCTACGCTCACTCCCTGACCAAGCACGAGCTCATC
CACTCGGACATCAAACTGTACCGCTGCGATTATTGCAACAAGGACTTCCG
TCTGCTGCATCACATGCGCCAGCACGAGGAGACCAAACTGCACCAGAACG
CCGTAATGCTGGCCGAGAGCATGAAGGTGGAAATGGTGGCCGAGCAGGGG
GGCGGGAACGAGATCCGAATTCAAGCTCACTGACGAAGCTTTCTAGACCA
T

BS01108.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Zif-RC 1167 CG10267-PC 1..1167 17..1183 5835 100 Plus
Zif-RB 1167 CG10267-PB 1..1167 17..1183 5835 100 Plus
Zif-RA 1167 CG10267-PA 1..1167 17..1183 5835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
Zif-RC 1455 CG10267-RC 140..1308 17..1185 5845 100 Plus
Zif-RB 1394 CG10267-RB 79..1247 17..1185 5845 100 Plus
Zif-RA 1463 CG10267-RA 148..1316 17..1185 5845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6457493..6458109 161..777 3085 100 Plus
3R 32079331 3R 6458403..6458675 913..1185 1365 100 Plus
3R 32079331 3R 6457287..6457430 17..160 720 100 Plus
3R 32079331 3R 6458167..6458301 778..912 675 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:45:42 has no hits.

BS01108.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:58 Download gff for BS01108.complete
Subject Subject Range Query Range Percent Splice Strand
CG10267-RA 1..1167 17..1183 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:07 Download gff for BS01108.complete
Subject Subject Range Query Range Percent Splice Strand
CG10267-RA 130..1302 9..1185 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:15 Download gff for BS01108.complete
Subject Subject Range Query Range Percent Splice Strand
Zif-RA 148..1316 17..1185 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:58 Download gff for BS01108.complete
Subject Subject Range Query Range Percent Splice Strand
CG10267-RA 130..1302 9..1185 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:37 Download gff for BS01108.complete
Subject Subject Range Query Range Percent Splice Strand
Zif-RA 148..1316 17..1185 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:37 Download gff for BS01108.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6457287..6457430 17..160 100 -> Plus
3R 6457493..6458109 161..777 100 -> Plus
3R 6458167..6458301 778..912 100 -> Plus
3R 6458403..6458675 913..1185 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:15 Download gff for BS01108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2283009..2283152 17..160 100 -> Plus
arm_3R 2283215..2283831 161..777 100 -> Plus
arm_3R 2283889..2284023 778..912 100 -> Plus
arm_3R 2284125..2284397 913..1185 100   Plus

BS01108.pep Sequence

Translation from 16 to 1182

> BS01108.pep
MRVELTPQTCRVCLAQSERLQRLDEIREEGEESPNEMLIQLLGVSYSNLN
DREHIPDGICKSCKVELNMAYQFREKALRKQMEIEEYCRELGLLDESDVM
MIKEEDGSQQQCDEEMYILEETTTGEEEHQEEKGHEEYLEVDTSDQQECI
GDTIEYLEDNYTIEMNSDQTEIVLESEKQYEETPSQQLALQEAAKASLKA
RRGRVRRGLNSLTTSDGTEKGGYICDVCGNFYEKRGRMMEHRRRHDGICQ
YACELCDAKFQVREQLRKHMYSHTGSKPYKCSFCSRQFFYESVLKSHENV
HRGIKPYVCKVCDKAFAYAHSLTKHELIHSDIKLYRCDYCNKDFRLLHHM
RQHEETKLHQNAVMLAESMKVEMVAEQGGGNEIRIQAH*

BS01108.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Zif-PC 388 CG10267-PC 1..388 1..388 2065 100 Plus
Zif-PB 388 CG10267-PB 1..388 1..388 2065 100 Plus
Zif-PA 388 CG10267-PA 1..388 1..388 2065 100 Plus
M1BP-PA 418 CG9797-PA 12..409 9..384 399 27.6 Plus
CG14710-PB 415 CG14710-PB 10..400 10..361 384 27.7 Plus