Clone Sequence Records
BS01108.3prime Sequence
894 bp (813 high quality bases) assembled on 2005-11-30
> BS01108.3prime
ATGGTCTAGAAAGCTTCGTCAGTGAGCTTGAATTCGGATCTCGTTCCCGC
CCCCCTGCTCGGCCACCATTTCCACCTTCATGCTCTCGGCCAGCATTACG
GCGTTCTGGTGCAGTTTGGTCTCCTCGTGCTGGCGCATGTGATGCAGCAG
ACGGAAGTCCTTGTTGCAATAATCGCAGCGGTACAGTTTGATGTCCGAGT
GGATGAGCTCGTGCTTGGTCAGGGAGTGAGCGTAGGCAAACGCTTTGTCG
CACACCTTGCACACGTAGGGCTTGATGCCACGGTGAACATTTTCATGAGA
CTTGAGAACACTTTCGTAGAAGAATTGACGACTGCAGAAGCTGCACTTAT
AGGGTTTGCTGCCCGTGTGGGAGTACATGTGCTTCCTCAGTTGCTCGCGC
ACCTGGAACTTGGCATCGCATAGTTCGCATGCATATTGGCAGATGCCGTC
ATGGCGTCTGCGATGCTCCATCATCCGGCCGCGCTTTTCGTAAAAGTTTC
CGCAGACGTCGCAGATATAGCCACCCTTCTCAGTGCCGTCCGATGTTGTT
AGGGAGTTTAATCCGCGACGAACCCGGCCGCGCCGCGCCTTCAGGCTTGC
CTTGGCCGCCTCCTGCAGCGCCAACTGCTGCGATGGTGTCTCTTCGTACT
GCTTCTCAGACTCCAGGACGATCTCGGTCTGATCGGAGTTCATCTCGATG
GTGTAGTTGTCCTCCAAGTACTCGATGGTGTCGCCAATGCACTCCTGCTG
ATCGCTGGTGTCCACTTCCAAGTACTCCTCGTGCCCCTTTTCTTCCTGGT
GCTCCTCTTCCCCGGTGGTGGTCTCCTCCCAGATGTACATCTCCTCGTCG
CATTGCTGCTGCGAGCCGTCCTCCTCCTTGATCATCATCACATC
BS01108.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10267-PA | 1167 | CG10267-RA | 292..1167 | 894..19 | 4330 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-RC | 1455 | CG10267-RC | 431..1308 | 894..17 | 4360 | 99.8 | Minus |
Zif-RB | 1394 | CG10267-RB | 370..1247 | 894..17 | 4360 | 99.8 | Minus |
Zif-RA | 1463 | CG10267-RA | 439..1316 | 894..17 | 4360 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6457640..6458109 | 894..425 | 2320 | 99.6 | Minus |
3R | 32079331 | 3R | 6458403..6458675 | 289..17 | 1365 | 100 | Minus |
3R | 32079331 | 3R | 6458167..6458301 | 424..290 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:21:09 has no hits.
BS01108.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:00:59 Download gff for
BS01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-PA | 292..1167 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:57 Download gff for
BS01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-PA | 292..1167 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:25:58 Download gff for
BS01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 439..1316 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:41:55 Download gff for
BS01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 439..1316 | 17..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:41:55 Download gff for
BS01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6457640..6458109 | 425..894 | 99 | -> | Minus |
3R | 6458167..6458301 | 290..424 | 100 | -> | Minus |
3R | 6458403..6458675 | 17..289 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:25:58 Download gff for
BS01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2284125..2284397 | 17..289 | 100 | | Minus |
arm_3R | 2283362..2283831 | 425..894 | 99 | -> | Minus |
arm_3R | 2283889..2284023 | 290..424 | 100 | -> | Minus |
BS01108.5prime Sequence
787 bp (759 high quality bases) assembled on 2005-11-30
> BS01108.5prime
GAAGTTATCAGTCGACATGCGCGTCGAGCTTACCCCACAGACGTGCCGGG
TCTGCCTGGCGCAGAGTGAGCGACTGCAGCGCCTAGACGAGATCCGCGAG
GAAGGCGAGGAATCGCCGAACGAGATGTTGATTCAACTTTTGGGAGTCTC
ATACAGCAATCTGAACGACAGAGAACACATACCCGATGGCATCTGCAAGT
CCTGCAAGGTCGAACTCAACATGGCCTACCAGTTTCGCGAGAAGGCGCTG
CGCAAGCAGATGGAGATTGAGGAGTACTGCCGGGAACTGGGCTTGCTGGA
CGAATCAGATGTGATGATGATCAAGGAGGAGGACGGCTCGCAGCAGCAAT
GCGACGAGGAGATGTACATCCTGGAGGAGACCACCACCGGGGAAGAGGAG
CACCAGGAAGAAAAGGGGCACGAGGAGTACTTGGAAGTGGACACCAGCGA
TCAGCAGGAGTGCATTGGCGACACCATCGAGTACTTGGAGGACAACTACA
CCATCGAGATGAACTCCGATCAGACCGAGATCGTCCTGGAGTCTGAGAAG
CAGTACGAAGAGACACCATCGCAGCAGTTGGCGCTGCAGGAGGCGGCCAA
GGCAAGCCTGAAGGCGCGGCGCGGCCGGGTTCGTCGCGGATTAAACTCCC
TAACAACATCGGACGGCACTGAGAAGGGTGGCTATATCTGCGACGTCTGC
GGAAACTTTTACGAAAAGCGCGGCCGGATGATGGAGCATCGCAGACGCCA
TGACGGCATCTGCCCATATGCATGCGAACTATGCGAT
BS01108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10267-PA | 1167 | CG10267-RA | 1..771 | 17..787 | 3830 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-RC | 1455 | CG10267-RC | 140..910 | 17..787 | 3840 | 99.9 | Plus |
Zif-RB | 1394 | CG10267-RB | 79..849 | 17..787 | 3840 | 99.9 | Plus |
Zif-RA | 1463 | CG10267-RA | 148..918 | 17..787 | 3840 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6457493..6458109 | 161..777 | 3070 | 99.8 | Plus |
3R | 32079331 | 3R | 6457287..6457430 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:37:06 has no hits.
BS01108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:00 Download gff for
BS01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:07:58 Download gff for
BS01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:50:42 Download gff for
BS01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 144..918 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:31:20 Download gff for
BS01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 144..918 | 9..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:31:20 Download gff for
BS01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6457283..6457430 | 9..160 | 97 | -> | Plus |
3R | 6457493..6458118 | 161..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:50:42 Download gff for
BS01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2283005..2283152 | 9..160 | 97 | -> | Plus |
arm_3R | 2283215..2283840 | 161..786 | 99 | | Plus |
BS01108.complete Sequence
1201 bp (1201 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634530
> BS01108.complete
GAAGTTATCAGTCGACATGCGCGTCGAGCTTACCCCACAGACGTGCCGGG
TCTGCCTGGCGCAGAGTGAGCGACTGCAGCGCCTAGACGAGATCCGCGAG
GAAGGCGAGGAATCGCCGAACGAGATGTTGATTCAACTTTTGGGAGTCTC
ATACAGCAATCTGAACGACAGAGAACACATACCCGATGGCATCTGCAAGT
CCTGCAAGGTCGAACTCAACATGGCCTACCAGTTTCGCGAGAAGGCGCTG
CGCAAGCAGATGGAGATTGAGGAGTACTGCCGGGAACTGGGCTTGCTGGA
CGAATCAGATGTGATGATGATCAAGGAGGAGGACGGCTCGCAGCAGCAAT
GCGACGAGGAGATGTACATCCTGGAGGAGACCACCACCGGGGAAGAGGAG
CACCAGGAAGAAAAGGGGCACGAGGAGTACTTGGAAGTGGACACCAGCGA
TCAGCAGGAGTGCATTGGCGACACCATCGAGTACTTGGAGGACAACTACA
CCATCGAGATGAACTCCGATCAGACCGAGATCGTCCTGGAGTCTGAGAAG
CAGTACGAAGAGACACCATCGCAGCAGTTGGCGCTGCAGGAGGCGGCCAA
GGCAAGCCTGAAGGCGCGGCGCGGCCGGGTTCGTCGCGGATTAAACTCCC
TAACAACATCGGACGGCACTGAGAAGGGTGGCTATATCTGCGACGTCTGC
GGAAACTTTTACGAAAAGCGCGGCCGGATGATGGAGCATCGCAGACGCCA
TGACGGCATCTGCCAATATGCATGCGAACTATGCGATGCCAAGTTCCAGG
TGCGCGAGCAACTGAGGAAGCACATGTACTCCCACACGGGCAGCAAACCC
TATAAGTGCAGCTTCTGCAGTCGTCAATTCTTCTACGAAAGTGTTCTCAA
GTCTCATGAAAATGTTCACCGTGGCATCAAGCCCTACGTGTGCAAGGTGT
GCGACAAAGCGTTTGCCTACGCTCACTCCCTGACCAAGCACGAGCTCATC
CACTCGGACATCAAACTGTACCGCTGCGATTATTGCAACAAGGACTTCCG
TCTGCTGCATCACATGCGCCAGCACGAGGAGACCAAACTGCACCAGAACG
CCGTAATGCTGGCCGAGAGCATGAAGGTGGAAATGGTGGCCGAGCAGGGG
GGCGGGAACGAGATCCGAATTCAAGCTCACTGACGAAGCTTTCTAGACCA
T
BS01108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-RC | 1167 | CG10267-PC | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Zif-RB | 1167 | CG10267-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Zif-RA | 1167 | CG10267-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-RC | 1455 | CG10267-RC | 140..1308 | 17..1185 | 5845 | 100 | Plus |
Zif-RB | 1394 | CG10267-RB | 79..1247 | 17..1185 | 5845 | 100 | Plus |
Zif-RA | 1463 | CG10267-RA | 148..1316 | 17..1185 | 5845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6457493..6458109 | 161..777 | 3085 | 100 | Plus |
3R | 32079331 | 3R | 6458403..6458675 | 913..1185 | 1365 | 100 | Plus |
3R | 32079331 | 3R | 6457287..6457430 | 17..160 | 720 | 100 | Plus |
3R | 32079331 | 3R | 6458167..6458301 | 778..912 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:45:42 has no hits.
BS01108.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:58 Download gff for
BS01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-RA | 1..1167 | 17..1183 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:07 Download gff for
BS01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-RA | 130..1302 | 9..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:15 Download gff for
BS01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 148..1316 | 17..1185 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:58 Download gff for
BS01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-RA | 130..1302 | 9..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:37 Download gff for
BS01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 148..1316 | 17..1185 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:37 Download gff for
BS01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6457287..6457430 | 17..160 | 100 | -> | Plus |
3R | 6457493..6458109 | 161..777 | 100 | -> | Plus |
3R | 6458167..6458301 | 778..912 | 100 | -> | Plus |
3R | 6458403..6458675 | 913..1185 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:15 Download gff for
BS01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2283009..2283152 | 17..160 | 100 | -> | Plus |
arm_3R | 2283215..2283831 | 161..777 | 100 | -> | Plus |
arm_3R | 2283889..2284023 | 778..912 | 100 | -> | Plus |
arm_3R | 2284125..2284397 | 913..1185 | 100 | | Plus |
BS01108.pep Sequence
Translation from 16 to 1182
> BS01108.pep
MRVELTPQTCRVCLAQSERLQRLDEIREEGEESPNEMLIQLLGVSYSNLN
DREHIPDGICKSCKVELNMAYQFREKALRKQMEIEEYCRELGLLDESDVM
MIKEEDGSQQQCDEEMYILEETTTGEEEHQEEKGHEEYLEVDTSDQQECI
GDTIEYLEDNYTIEMNSDQTEIVLESEKQYEETPSQQLALQEAAKASLKA
RRGRVRRGLNSLTTSDGTEKGGYICDVCGNFYEKRGRMMEHRRRHDGICQ
YACELCDAKFQVREQLRKHMYSHTGSKPYKCSFCSRQFFYESVLKSHENV
HRGIKPYVCKVCDKAFAYAHSLTKHELIHSDIKLYRCDYCNKDFRLLHHM
RQHEETKLHQNAVMLAESMKVEMVAEQGGGNEIRIQAH*
BS01108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-PC | 388 | CG10267-PC | 1..388 | 1..388 | 2065 | 100 | Plus |
Zif-PB | 388 | CG10267-PB | 1..388 | 1..388 | 2065 | 100 | Plus |
Zif-PA | 388 | CG10267-PA | 1..388 | 1..388 | 2065 | 100 | Plus |
M1BP-PA | 418 | CG9797-PA | 12..409 | 9..384 | 399 | 27.6 | Plus |
CG14710-PB | 415 | CG14710-PB | 10..400 | 10..361 | 384 | 27.7 | Plus |