Clone BS01110 Report

Search the DGRC for BS01110

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG5641-RA
Protein status:BS01110.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01110.3prime Sequence

905 bp (767 high quality bases) assembled on 2005-11-30

> BS01110.3prime
ATGGTCTAGAAAGCTTCGTTACTCGGCGCCATCGTCGCTGCCCTCTTCTT
CGTTCTCATTCTCGATCATGTCGATGTCCTCCTCGAGGTCGCCCTCCTTC
TTGTCCGTTGGCTTCTCGTAGACAGCGGTCAGCGGGGAAATGCACACGCC
GTTCCAGACGGACATTTCGCGCACAACGCTGGTGTTGCCCTCCAGTCCCA
AAATGTGTTTGTATCCGCCGTGGGCCAGCACGCGCAGTAGTGTCTGCGAT
GTGTAGCAGCACACATCCTGCTGCTCCAATGTCATGGCAGTGTGCACACG
GATGTGTCCCGGCTCGGTGGGATCCGTGATGCCGGCCGAGCCCGGCAGGA
AGAGCCCGGCGGAGAGTAGCTGAAAGACGCGACGGAAGGCCAGGTTGATG
GGCAGTGCCTGTCGCGACGGGTTGTTCATGATGGCCAAATGGGCGATCAG
GTCCAGCATCCAGGCCGACAGCGGCGAAAAAGCGTCGAAACGCCTAGTGA
GATCCTTGAGAATGCGAATGAGCACCTTTATCGAGGAGTGGTGGGCATTT
TCCTCAAACCAGCGCGTGTGCCGAATGGCAGCCAGATGGCTCTGCATCAG
TTTGTGATCCAAATGGATCTCAGGCTCCAGCTTGCGAAGATTCTGCGGCA
AGGTGGCGATCAGAATGCGCACCTTGGCATGCACGTTGGCGATGTCGAAG
CCCCGCTCATGGATCTGTACGGTGTGCTGATCGCCCTTGGTCAGAACTTC
AGTCTTCATGCTGGCCTTCAGGTCGGCCTCCACTTTTTTGGCCAGCGCAT
CGACGGCCTCCTTGGTGGGCAGGGTTTTGAGGATAACCACCACATCGGCT
ACATTGTTGCCCGGTCAGTATGGGTGCCCCTCTTGAAGGAACCAAACCTG
ACGCA

BS01110.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5641-PA 1191 CG5641-RA 347..1191 863..19 4225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5641-RA 1365 CG5641-RA 389..1272 905..19 4330 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12427888..12428762 19..895 4255 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 23:16:35 has no hits.

BS01110.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:01 Download gff for BS01110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5641-PA 309..1191 19..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:00 Download gff for BS01110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5641-PA 309..1191 19..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:39:29 Download gff for BS01110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5641-RA 390..1272 19..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:28:48 Download gff for BS01110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5641-RA 390..1272 19..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:28:48 Download gff for BS01110.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12427888..12428770 19..904 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:39:29 Download gff for BS01110.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8253610..8254492 19..904 99   Plus

BS01110.5prime Sequence

908 bp (851 high quality bases) assembled on 2005-11-30

> BS01110.5prime
GAAGTTATCAGTCGACATGGTTCGCGGAGCTCTCCGAGGTGGCCGCCCCA
TGCGCGGCGGCATACGTCCGCCGTTCAAAAAGACATTCGTGCCGCGCCAC
CCCTTCGATCTGACCCTCGCGGAGGTCTTCTTTCCCAAAGTTCCATCCGC
CGGCGCCGTTGACGATTCTGCTTTGACTGCGGCGCTGCTGAAGCGTAACC
AGGACCTGAGTCCCACTCCCAGCGAGCAGACGGCTATTGGCAATCTAGTG
ACCAAGGTGCAGGCTGTTCTCGACAATCTGGTGGTTGCACCCGGGGATCT
GACAACTTGTCAACTGGAGGAAGTGCGTCAGGTTGGCTCCTTCAAGAAGG
GCACCATACTGACGGGCAACAATGTAGCCGATGTGGTGGTTATCCTCAAA
ACCCTGCCCACCAAGGAGGCCGTCGATGCGCTGGCCAAAAAAGTGGAGGC
CGACCTGAAGGCCAGCATGAAGACTGAAGTTCTGACCAAGGGCGATCAGC
ACACCGTACAGATCCATGAGCGGGGCTTCGACATCGCCAACGTGCATGCC
AAGGTGCGCATTCTGATCGCCACCTTGCCGCAGAATCTTCGCAAGCTGGA
GCCTGAGATCCATTTGGATCACAAACTGATGCAGAGCCATCTGGCTGCCA
TTCGGCACACGCGCTGGTTTGAGGAAAATGCCCACCACTCCTCGATAAAG
GTGCTCATTCGCATTCTCAAGGATCTCACTAGGCGTTTCGACGCTTTTTC
GCCGCTGTCGGCCTGGATGCTGGACCTGATCGCCCATTTGGCCATCATGA
ACAACCCGTCGCGACAGGCACTGCCCATCAACCTGGCCTTCCGTCGCGTC
TTTCAGCTACTCTCCGGCCGGGCTCTTCCCTGCCGGGCTCGGCCGGCATC
ACGGATCC

BS01110.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5641-PA 1191 CG5641-RA 1..850 17..866 4250 100 Plus
CG5641-PA 1191 CG5641-RA 861..890 879..908 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5641-RA 1365 CG5641-RA 82..971 17..908 4410 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12428189..12428784 908..311 2890 99.7 Minus
3R 32079331 3R 12429036..12429201 182..17 830 100 Minus
3R 32079331 3R 12428846..12428975 310..181 650 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:27:16 has no hits.

BS01110.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:02 Download gff for BS01110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5641-PA 1..890 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:02 Download gff for BS01110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5641-PA 1..890 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:25:16 Download gff for BS01110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5641-RA 75..971 9..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:25 Download gff for BS01110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5641-RA 75..971 9..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:25 Download gff for BS01110.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12428189..12428784 311..908 99 <- Minus
3R 12428846..12428974 182..310 100 <- Minus
3R 12429037..12429208 9..181 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:25:16 Download gff for BS01110.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8253911..8254506 311..908 99 <- Minus
arm_3R 8254568..8254696 182..310 100 <- Minus
arm_3R 8254759..8254930 9..181 97   Minus

BS01110.complete Sequence

1225 bp (1225 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634531

> BS01110.complete
GAAGTTATCAGTCGACATGGTTCGCGGAGCTCTCCGAGGTGGCCGCCCCA
TGCGCGGCGGCATACGTCCGCCGTTCAAAAAGACATTCGTGCCGCGCCAC
CCCTTCGATCTGACCCTCGCGGAGGTCTTCTTTCCCAAAGTTCCATCCGC
CGGCGCCGTTGACGATTCTGCTTTGACTGCGGCGCTGCTGAAGCGTAACC
AGGACCTGAGTCCCACTCCCAGCGAGCAGACGGCTATTGGCAATCTAGTG
ACCAAGGTGCAGGCTGTTCTCGACAATCTGGTGGTTGCACCCGGGGATCT
GACAACTTGTCAACTGGAGGAAGTGCGTCAGGTTGGCTCCTTCAAGAAGG
GCACCATACTGACGGGCAACAATGTAGCCGATGTGGTGGTTATCCTCAAA
ACCCTGCCCACCAAGGAGGCCGTCGATGCGCTGGCCAAAAAAGTGGAGGC
CGACCTGAAGGCCAGCATGAAGACTGAAGTTCTGACCAAGGGCGATCAGC
ACACCGTACAGATCCATGAGCGGGGCTTCGACATCGCCAACGTGCATGCC
AAGGTGCGCATTCTGATCGCCACCTTGCCGCAGAATCTTCGCAAGCTGGA
GCCTGAGATCCATTTGGATCACAAACTGATGCAGAGCCATCTGGCTGCCA
TTCGGCACACGCGCTGGTTTGAGGAAAATGCCCACCACTCCTCGATAAAG
GTGCTCATTCGCATTCTCAAGGATCTCACTAGGCGTTTCGACGCTTTTTC
GCCGCTGTCGGCCTGGATGCTGGACCTGATCGCCCATTTGGCCATCATGA
ACAACCCGTCGCGACAGGCACTGCCCATCAACCTGGCCTTCCGTCGCGTC
TTTCAGCTACTCTCCGCCGGGCTCTTCCTGCCGGGCTCGGCCGGCATCAC
GGATCCCACCGAGCCGGGACACATCCGTGTGCACACTGCCATGACATTGG
AGCAGCAGGATGTGTGCTGCTACACATCGCAGACACTACTGCGCGTGCTG
GCCCACGGCGGATACAAACACATTTTGGGACTGGAGGGCAACACCAGCGT
TGTGCGCGAAATGTCCGTCTGGAACGGCGTGTGCATTTCCCCGCTGACCG
CTGTCTACGAGAAGCCAACGGACAAGAAGGAGGGCGACCTCGAGGAGGAC
ATCGACATGATCGAGAATGAGAACGAAGAAGAGGGCAGCGACGATGGCGC
CGAGTAACGAAGCTTTCTAGACCAT

BS01110.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5641-RA 1191 CG5641-PA 1..1191 17..1207 5955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5641-RA 1365 CG5641-RA 82..1272 17..1207 5955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12427888..12428784 1207..311 4485 100 Minus
3R 32079331 3R 12429036..12429201 182..17 830 100 Minus
3R 32079331 3R 12428846..12428975 310..181 650 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:44:19 has no hits.

BS01110.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:59 Download gff for BS01110.complete
Subject Subject Range Query Range Percent Splice Strand
CG5641-RA 1..1191 17..1207 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:08 Download gff for BS01110.complete
Subject Subject Range Query Range Percent Splice Strand
CG5641-RA 73..1270 9..1207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:36 Download gff for BS01110.complete
Subject Subject Range Query Range Percent Splice Strand
CG5641-RA 82..1272 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:59 Download gff for BS01110.complete
Subject Subject Range Query Range Percent Splice Strand
CG5641-RA 73..1270 9..1207 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:49 Download gff for BS01110.complete
Subject Subject Range Query Range Percent Splice Strand
CG5641-RA 82..1272 17..1209 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:49 Download gff for BS01110.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12427886..12428784 311..1209 99 <- Minus
3R 12428846..12428974 182..310 100 <- Minus
3R 12429037..12429201 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:36 Download gff for BS01110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8253608..8254506 311..1209 99 <- Minus
arm_3R 8254568..8254696 182..310 100 <- Minus
arm_3R 8254759..8254923 17..181 100   Minus

BS01110.pep Sequence

Translation from 16 to 1206

> BS01110.pep
MVRGALRGGRPMRGGIRPPFKKTFVPRHPFDLTLAEVFFPKVPSAGAVDD
SALTAALLKRNQDLSPTPSEQTAIGNLVTKVQAVLDNLVVAPGDLTTCQL
EEVRQVGSFKKGTILTGNNVADVVVILKTLPTKEAVDALAKKVEADLKAS
MKTEVLTKGDQHTVQIHERGFDIANVHAKVRILIATLPQNLRKLEPEIHL
DHKLMQSHLAAIRHTRWFEENAHHSSIKVLIRILKDLTRRFDAFSPLSAW
MLDLIAHLAIMNNPSRQALPINLAFRRVFQLLSAGLFLPGSAGITDPTEP
GHIRVHTAMTLEQQDVCCYTSQTLLRVLAHGGYKHILGLEGNTSVVREMS
VWNGVCISPLTAVYEKPTDKKEGDLEEDIDMIENENEEEGSDDGAE*

BS01110.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5641-PA 396 CG5641-PA 1..396 1..396 2030 100 Plus
Zn72D-PD 884 CG5215-PD 545..836 62..352 194 25.7 Plus
Zn72D-PC 884 CG5215-PC 545..836 62..352 194 25.7 Plus
Zn72D-PF 884 CG5215-PF 545..836 62..352 194 25.7 Plus
Zn72D-PB 884 CG5215-PB 545..836 62..352 194 25.7 Plus