Clone BS01111 Report

Search the DGRC for BS01111

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptNf-YA-RA
Protein status:BS01111.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01111.3prime Sequence

886 bp (808 high quality bases) assembled on 2005-11-30

> BS01111.3prime
ATGGTCTAGAAAGCTTCGCTATTCCGATTTGATCGCCGTTATGGTAATGC
TGGGCGTTTGATGTGGCGCGATCAGTTTGGGCGGAGCACGTGCCGTGCCA
CGGCTGAGGGTGACGCCGCCACTGGACGCCATTGGCATGCTGCCGCCTTC
CGGGCCGGACGAATCTTGGTCGCCCTTCTCCTGTGCCGAATGGAAGCGAC
CACCCTCGCCACGAGCCCGATTCATGGCGTGGCGATGACGAGATTCGTGC
AGATACTTGCACCGTTCCTTGGGTATGCGCGACTCTAGCTTGGCCCTGGC
CTGCCGCCGAATGAGAATACGTTTGTACTGCTTGGCATTCACATAGAGCG
GCTCCTCGTCCGCCTCGCCCTTGGAGCTCTCGTCCTCGCTGTTCGTATTC
GTTCCAGTTGTACTTGTGCTGACATCGGCGCTTATATTATTGACTGCAGC
ACTGGCAGCCACCGCCGCCACCGTCTGCTGCTGTTGCTGCTGCTGCTGGT
TTTGGGTCTGGGATTGTACTTGTTGATGCTGCTGCTGTTGTTGTTGGGTA
ACCACTGTGCCCACTCCGGCGCCTACTCCGGCATTGGCGGCCGCTGCATT
CACCGCTGCCATCGCTGTCTGCGGCACCATTATAATCTGTTGCCCAGCTG
TGGGTGCCGCCTGATTAGCGCTCGGTGCTGGATTGATCTGCACCAGCTGC
CCATTGATATTGAGGTAGTGCGGCGTCGGCTGGGCTGCCATGGCAGCTGC
GGCGTTGGCCGCTGCATTCGGATCCAAGGCGGCAATGGTGGGCGTCTGAT
AGAATATAGTCTGGGCATCGGGCAGCTGCATCACCTGCATCTGTGGCTGC
TGCTGCGCAGCCTGCAGCATAATCTGGGTGGCCTGC

BS01111.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3891-PA 1200 CG3891-RA 333..1200 886..19 4290 99.7 Minus
CG6700-PA 2625 CG6700-RA 493..519 546..520 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
Nf-YA-RA 2055 CG3891-RA 551..1418 886..19 4310 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9440693..9441560 19..886 4310 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 18:54:37 has no hits.

BS01111.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:04 Download gff for BS01111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3891-PA 333..1200 19..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:04 Download gff for BS01111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3891-PA 333..1200 19..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:15:21 Download gff for BS01111.3prime
Subject Subject Range Query Range Percent Splice Strand
Nf-YA-RA 551..1424 12..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:00 Download gff for BS01111.3prime
Subject Subject Range Query Range Percent Splice Strand
Nf-YA-RA 551..1424 12..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:00 Download gff for BS01111.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9440687..9441560 12..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:21 Download gff for BS01111.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9433787..9434660 12..886 99   Plus

BS01111.5prime Sequence

875 bp (833 high quality bases) assembled on 2005-11-30

> BS01111.5prime
GAAGTTATCAGTCGACATGGAAAACCATTTCAGCGCCACCAGTCGCCCCT
CAGCCACGCCCAGAATGTGCACCACCGCCTCTGCCGTCGGTGCTGCCGCC
AGCGCCGCCGCCGCCGCCGGCAACAACAATAACAACAGCAATAGCAGCAG
CAACAACAACGCAACAACCGGCAACAATTTAAGTGTTAGCACTGCAGCCG
GAGGAGCCACAAATGCCGCAGCAACGGCACAACCCATCCAAGTGATACCA
ATGCCCATGCTGCCCACCGGAGCGGCGCAAATCATAATTGGCCAGCAGCC
ACAGGGTCAGGCGACGGCGACGGGTCTGCAGCCACAATTGATACCGCTGC
AGGCCAACCAGATTATGCTGCAGGCTGCGCAGCAGCAGCCACAGATGCAG
GTGATGCAGCTGCCCGATGGCCAGACTATATTCTATCAGACGCCCACCAT
TGCCGCCTTGGATCCGAATGCAGCGGCCAACGCCGCAGCTGCCATGGCAG
CCCAGCCGACGCCGCACTACCTCAATATCAATGGGCAGCTGGTGCAGATC
AATCCAGCACCGAGCGCTAATCAGGCGGCACCCACAGCTGGGCAACAGAT
TATAATGGTGCCGCAGACAGCGATGGCAGCGGTGAATGCAGCGGCCGCCA
ATGCCGGAGTAGGCGCCGGAGTGGGCACAGTGGTTACCCAACAACAACAG
CAGCAGCATCAACAAGTACAATCCCAGACCCAAAACCAGCAGCAGCAGCA
ACAGCAGCAGACGGTGGCGGCGGTGGCTGCCAGTGCTGCAGTCAATAATA
TAAGCGCCGATGTCAGCACAAGTACAACTGGAACGAATACGAACAGCGAG
GACGAGAGCTCCAGGGGCGAGGCGG

BS01111.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3891-PA 1200 CG3891-RA 1..859 17..875 4270 99.8 Plus
CG6700-PA 2625 CG6700-RA 493..519 689..715 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Nf-YA-RA 2055 CG3891-RA 219..1077 17..875 4280 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9441034..9441892 875..17 4280 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 10:06:52 has no hits.

BS01111.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:04 Download gff for BS01111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3891-PA 1..859 17..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:05 Download gff for BS01111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3891-PA 1..859 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:40:55 Download gff for BS01111.5prime
Subject Subject Range Query Range Percent Splice Strand
Nf-YA-RA 211..1077 7..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:23 Download gff for BS01111.5prime
Subject Subject Range Query Range Percent Splice Strand
Nf-YA-RA 211..1077 7..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:23 Download gff for BS01111.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9441034..9441900 7..875 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:40:55 Download gff for BS01111.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9434134..9435000 7..875 99   Minus

BS01111.complete Sequence

1234 bp (1234 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634532

> BS01111.complete
GAAGTTATCAGTCGACATGGAAAACCATTTCAGCGCCACCAGTCGCCCCT
CAGCCACGCCCAGAATGTGCACCACCGCCTCTGCCGTCGGTGCTGCCGCC
AGCGCCGCCGCCGCCGCCGGCAACAACAATAACAACAGCAATAGCAGCAG
CAACAACAACGCAACAACCGGCAACAATTTAAGTGTTAGCACTGCAGCCG
GAGGAGCCACAAATGCCGCAGCAACGGCACAACCCATCCAAGTGATACCA
ATGCCCATGCTGCCCACCGGAGCGGCGCAAATCATAATTGGCCAGCAGCC
ACAGGGTCAGGCGACGGCGACGGGTCTGCAGCCACAATTGATACCGCTGC
AGGCCAACCAGATTATGCTGCAGGCTGCGCAGCAGCAGCCACAGATGCAG
GTGATGCAGCTGCCCGATGGCCAGACTATATTCTATCAGACGCCCACCAT
TGCCGCCTTGGATCCGAATGCAGCGGCCAACGCCGCAGCTGCCATGGCAG
CCCAGCCGACGCCGCACTACCTCAATATCAATGGGCAGCTGGTGCAGATC
AATCCAGCACCGAGCGCTAATCAGGCGGCACCCACAGCTGGGCAACAGAT
TATAATGGTGCCGCAGACAGCGATGGCAGCGGTGAATGCAGCGGCCGCCA
ATGCCGGAGTAGGCGCCGGAGTGGGCACAGTGGTTACCCAACAACAACAG
CAGCAGCATCAACAAGTACAATCCCAGACCCAAAACCAGCAGCAGCAGCA
ACAGCAGCAGACGGTGGCGGCGGTGGCTGCCAGTGCTGCAGTCAATAATA
TAAGCGCCGATGTCAGCACAAGTACAACTGGAACGAATACGAACAGCGAG
GACGAGAGCTCCAAGGGCGAGGCGGACGAGGAGCCGCTCTATGTGAATGC
CAAGCAGTACAAACGTATTCTCATTCGGCGGCAGGCCAGGGCCAAGCTAG
AGTCGCGCATACCCAAGGAACGGTGCAAGTATCTGCACGAATCTCGTCAT
CGCCACGCCATGAATCGGGCTCGTGGCGAGGGTGGTCGCTTCCATTCGGC
ACAGGAGAAGGGCGACCAAGATTCGTCCGGCCCGGAAGGCGGCAGCATGC
CAATGGCGTCCAGTGGCGGCGTCACCCTCAGCCGTGGCACGGCACGTGCT
CCGCCCAAACTGATCGCGCCACATCAAACGCCCAGCATTACCATAACGGC
GATCAAATCGGAATAGCGAAGCTTTCTAGACCAT

BS01111.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Nf-YA-RA 1200 CG3891-PA 1..1200 17..1216 6000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Nf-YA-RA 2055 CG3891-RA 219..1418 17..1216 6000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9440693..9441892 1216..17 6000 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:49:42 has no hits.

BS01111.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:01 Download gff for BS01111.complete
Subject Subject Range Query Range Percent Splice Strand
CG3891-RA 1..1200 17..1216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:10 Download gff for BS01111.complete
Subject Subject Range Query Range Percent Splice Strand
CG3891-RA 197..1410 7..1223 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:26 Download gff for BS01111.complete
Subject Subject Range Query Range Percent Splice Strand
Nf-YA-RA 219..1421 17..1218 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:01 Download gff for BS01111.complete
Subject Subject Range Query Range Percent Splice Strand
CG3891-RA 197..1410 7..1223 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:53 Download gff for BS01111.complete
Subject Subject Range Query Range Percent Splice Strand
Nf-YA-RA 219..1421 17..1218 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:53 Download gff for BS01111.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9440690..9441892 17..1218 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:26 Download gff for BS01111.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9433790..9434992 17..1218 99   Minus

BS01111.pep Sequence

Translation from 16 to 1215

> BS01111.pep
MENHFSATSRPSATPRMCTTASAVGAAASAAAAAGNNNNNSNSSSNNNAT
TGNNLSVSTAAGGATNAAATAQPIQVIPMPMLPTGAAQIIIGQQPQGQAT
ATGLQPQLIPLQANQIMLQAAQQQPQMQVMQLPDGQTIFYQTPTIAALDP
NAAANAAAAMAAQPTPHYLNINGQLVQINPAPSANQAAPTAGQQIIMVPQ
TAMAAVNAAAANAGVGAGVGTVVTQQQQQQHQQVQSQTQNQQQQQQQQTV
AAVAASAAVNNISADVSTSTTGTNTNSEDESSKGEADEEPLYVNAKQYKR
ILIRRQARAKLESRIPKERCKYLHESRHRHAMNRARGEGGRFHSAQEKGD
QDSSGPEGGSMPMASSGGVTLSRGTARAPPKLIAPHQTPSITITAIKSE*

BS01111.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Nf-YA-PA 399 CG3891-PA 1..399 1..399 2001 100 Plus
Hmx-PE 592 CG43748-PE 170..439 1..289 165 25.9 Plus
Hmx-PC 592 CG43748-PC 170..439 1..289 165 25.9 Plus
Hmx-PD 718 CG43748-PD 170..439 1..289 165 25.9 Plus
bun-PF 1097 CG42281-PM 604..879 27..297 155 27.2 Plus