Clone Sequence Records
BS01111.3prime Sequence
886 bp (808 high quality bases) assembled on 2005-11-30
> BS01111.3prime
ATGGTCTAGAAAGCTTCGCTATTCCGATTTGATCGCCGTTATGGTAATGC
TGGGCGTTTGATGTGGCGCGATCAGTTTGGGCGGAGCACGTGCCGTGCCA
CGGCTGAGGGTGACGCCGCCACTGGACGCCATTGGCATGCTGCCGCCTTC
CGGGCCGGACGAATCTTGGTCGCCCTTCTCCTGTGCCGAATGGAAGCGAC
CACCCTCGCCACGAGCCCGATTCATGGCGTGGCGATGACGAGATTCGTGC
AGATACTTGCACCGTTCCTTGGGTATGCGCGACTCTAGCTTGGCCCTGGC
CTGCCGCCGAATGAGAATACGTTTGTACTGCTTGGCATTCACATAGAGCG
GCTCCTCGTCCGCCTCGCCCTTGGAGCTCTCGTCCTCGCTGTTCGTATTC
GTTCCAGTTGTACTTGTGCTGACATCGGCGCTTATATTATTGACTGCAGC
ACTGGCAGCCACCGCCGCCACCGTCTGCTGCTGTTGCTGCTGCTGCTGGT
TTTGGGTCTGGGATTGTACTTGTTGATGCTGCTGCTGTTGTTGTTGGGTA
ACCACTGTGCCCACTCCGGCGCCTACTCCGGCATTGGCGGCCGCTGCATT
CACCGCTGCCATCGCTGTCTGCGGCACCATTATAATCTGTTGCCCAGCTG
TGGGTGCCGCCTGATTAGCGCTCGGTGCTGGATTGATCTGCACCAGCTGC
CCATTGATATTGAGGTAGTGCGGCGTCGGCTGGGCTGCCATGGCAGCTGC
GGCGTTGGCCGCTGCATTCGGATCCAAGGCGGCAATGGTGGGCGTCTGAT
AGAATATAGTCTGGGCATCGGGCAGCTGCATCACCTGCATCTGTGGCTGC
TGCTGCGCAGCCTGCAGCATAATCTGGGTGGCCTGC
BS01111.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3891-PA | 1200 | CG3891-RA | 333..1200 | 886..19 | 4290 | 99.7 | Minus |
CG6700-PA | 2625 | CG6700-RA | 493..519 | 546..520 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YA-RA | 2055 | CG3891-RA | 551..1418 | 886..19 | 4310 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9440693..9441560 | 19..886 | 4310 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:54:37 has no hits.
BS01111.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:04 Download gff for
BS01111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3891-PA | 333..1200 | 19..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:04 Download gff for
BS01111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3891-PA | 333..1200 | 19..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:15:21 Download gff for
BS01111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YA-RA | 551..1424 | 12..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:00 Download gff for
BS01111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YA-RA | 551..1424 | 12..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:00 Download gff for
BS01111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9440687..9441560 | 12..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:21 Download gff for
BS01111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9433787..9434660 | 12..886 | 99 | | Plus |
BS01111.5prime Sequence
875 bp (833 high quality bases) assembled on 2005-11-30
> BS01111.5prime
GAAGTTATCAGTCGACATGGAAAACCATTTCAGCGCCACCAGTCGCCCCT
CAGCCACGCCCAGAATGTGCACCACCGCCTCTGCCGTCGGTGCTGCCGCC
AGCGCCGCCGCCGCCGCCGGCAACAACAATAACAACAGCAATAGCAGCAG
CAACAACAACGCAACAACCGGCAACAATTTAAGTGTTAGCACTGCAGCCG
GAGGAGCCACAAATGCCGCAGCAACGGCACAACCCATCCAAGTGATACCA
ATGCCCATGCTGCCCACCGGAGCGGCGCAAATCATAATTGGCCAGCAGCC
ACAGGGTCAGGCGACGGCGACGGGTCTGCAGCCACAATTGATACCGCTGC
AGGCCAACCAGATTATGCTGCAGGCTGCGCAGCAGCAGCCACAGATGCAG
GTGATGCAGCTGCCCGATGGCCAGACTATATTCTATCAGACGCCCACCAT
TGCCGCCTTGGATCCGAATGCAGCGGCCAACGCCGCAGCTGCCATGGCAG
CCCAGCCGACGCCGCACTACCTCAATATCAATGGGCAGCTGGTGCAGATC
AATCCAGCACCGAGCGCTAATCAGGCGGCACCCACAGCTGGGCAACAGAT
TATAATGGTGCCGCAGACAGCGATGGCAGCGGTGAATGCAGCGGCCGCCA
ATGCCGGAGTAGGCGCCGGAGTGGGCACAGTGGTTACCCAACAACAACAG
CAGCAGCATCAACAAGTACAATCCCAGACCCAAAACCAGCAGCAGCAGCA
ACAGCAGCAGACGGTGGCGGCGGTGGCTGCCAGTGCTGCAGTCAATAATA
TAAGCGCCGATGTCAGCACAAGTACAACTGGAACGAATACGAACAGCGAG
GACGAGAGCTCCAGGGGCGAGGCGG
BS01111.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3891-PA | 1200 | CG3891-RA | 1..859 | 17..875 | 4270 | 99.8 | Plus |
CG6700-PA | 2625 | CG6700-RA | 493..519 | 689..715 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YA-RA | 2055 | CG3891-RA | 219..1077 | 17..875 | 4280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9441034..9441892 | 875..17 | 4280 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:06:52 has no hits.
BS01111.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:04 Download gff for
BS01111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3891-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:05 Download gff for
BS01111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3891-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:40:55 Download gff for
BS01111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YA-RA | 211..1077 | 7..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:23 Download gff for
BS01111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YA-RA | 211..1077 | 7..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:23 Download gff for
BS01111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9441034..9441900 | 7..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:40:55 Download gff for
BS01111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9434134..9435000 | 7..875 | 99 | | Minus |
BS01111.complete Sequence
1234 bp (1234 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634532
> BS01111.complete
GAAGTTATCAGTCGACATGGAAAACCATTTCAGCGCCACCAGTCGCCCCT
CAGCCACGCCCAGAATGTGCACCACCGCCTCTGCCGTCGGTGCTGCCGCC
AGCGCCGCCGCCGCCGCCGGCAACAACAATAACAACAGCAATAGCAGCAG
CAACAACAACGCAACAACCGGCAACAATTTAAGTGTTAGCACTGCAGCCG
GAGGAGCCACAAATGCCGCAGCAACGGCACAACCCATCCAAGTGATACCA
ATGCCCATGCTGCCCACCGGAGCGGCGCAAATCATAATTGGCCAGCAGCC
ACAGGGTCAGGCGACGGCGACGGGTCTGCAGCCACAATTGATACCGCTGC
AGGCCAACCAGATTATGCTGCAGGCTGCGCAGCAGCAGCCACAGATGCAG
GTGATGCAGCTGCCCGATGGCCAGACTATATTCTATCAGACGCCCACCAT
TGCCGCCTTGGATCCGAATGCAGCGGCCAACGCCGCAGCTGCCATGGCAG
CCCAGCCGACGCCGCACTACCTCAATATCAATGGGCAGCTGGTGCAGATC
AATCCAGCACCGAGCGCTAATCAGGCGGCACCCACAGCTGGGCAACAGAT
TATAATGGTGCCGCAGACAGCGATGGCAGCGGTGAATGCAGCGGCCGCCA
ATGCCGGAGTAGGCGCCGGAGTGGGCACAGTGGTTACCCAACAACAACAG
CAGCAGCATCAACAAGTACAATCCCAGACCCAAAACCAGCAGCAGCAGCA
ACAGCAGCAGACGGTGGCGGCGGTGGCTGCCAGTGCTGCAGTCAATAATA
TAAGCGCCGATGTCAGCACAAGTACAACTGGAACGAATACGAACAGCGAG
GACGAGAGCTCCAAGGGCGAGGCGGACGAGGAGCCGCTCTATGTGAATGC
CAAGCAGTACAAACGTATTCTCATTCGGCGGCAGGCCAGGGCCAAGCTAG
AGTCGCGCATACCCAAGGAACGGTGCAAGTATCTGCACGAATCTCGTCAT
CGCCACGCCATGAATCGGGCTCGTGGCGAGGGTGGTCGCTTCCATTCGGC
ACAGGAGAAGGGCGACCAAGATTCGTCCGGCCCGGAAGGCGGCAGCATGC
CAATGGCGTCCAGTGGCGGCGTCACCCTCAGCCGTGGCACGGCACGTGCT
CCGCCCAAACTGATCGCGCCACATCAAACGCCCAGCATTACCATAACGGC
GATCAAATCGGAATAGCGAAGCTTTCTAGACCAT
BS01111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YA-RA | 1200 | CG3891-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YA-RA | 2055 | CG3891-RA | 219..1418 | 17..1216 | 6000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9440693..9441892 | 1216..17 | 6000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:49:42 has no hits.
BS01111.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:01 Download gff for
BS01111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3891-RA | 1..1200 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:10 Download gff for
BS01111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3891-RA | 197..1410 | 7..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:26 Download gff for
BS01111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YA-RA | 219..1421 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:01 Download gff for
BS01111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3891-RA | 197..1410 | 7..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:53 Download gff for
BS01111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YA-RA | 219..1421 | 17..1218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:53 Download gff for
BS01111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9440690..9441892 | 17..1218 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:26 Download gff for
BS01111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9433790..9434992 | 17..1218 | 99 | | Minus |
BS01111.pep Sequence
Translation from 16 to 1215
> BS01111.pep
MENHFSATSRPSATPRMCTTASAVGAAASAAAAAGNNNNNSNSSSNNNAT
TGNNLSVSTAAGGATNAAATAQPIQVIPMPMLPTGAAQIIIGQQPQGQAT
ATGLQPQLIPLQANQIMLQAAQQQPQMQVMQLPDGQTIFYQTPTIAALDP
NAAANAAAAMAAQPTPHYLNINGQLVQINPAPSANQAAPTAGQQIIMVPQ
TAMAAVNAAAANAGVGAGVGTVVTQQQQQQHQQVQSQTQNQQQQQQQQTV
AAVAASAAVNNISADVSTSTTGTNTNSEDESSKGEADEEPLYVNAKQYKR
ILIRRQARAKLESRIPKERCKYLHESRHRHAMNRARGEGGRFHSAQEKGD
QDSSGPEGGSMPMASSGGVTLSRGTARAPPKLIAPHQTPSITITAIKSE*
BS01111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YA-PA | 399 | CG3891-PA | 1..399 | 1..399 | 2001 | 100 | Plus |
Hmx-PE | 592 | CG43748-PE | 170..439 | 1..289 | 165 | 25.9 | Plus |
Hmx-PC | 592 | CG43748-PC | 170..439 | 1..289 | 165 | 25.9 | Plus |
Hmx-PD | 718 | CG43748-PD | 170..439 | 1..289 | 165 | 25.9 | Plus |
bun-PF | 1097 | CG42281-PM | 604..879 | 27..297 | 155 | 27.2 | Plus |