Clone Sequence Records
BS01114.3prime Sequence
935 bp (850 high quality bases) assembled on 2005-11-30
> BS01114.3prime
ATGGTCTAGAAAGCTTCGCTACTCCTGCTCCTTTTCCTCTTCATCCTGCA
GGGTCTGTGCCAGCAGCTCCTCGACGGGGTCATCCTTCAGCGACTGGGTG
ATCTTTTCGAGGACCAAAGGCTGTCGCTCGCGCACCGCCTCATCATCTTC
CTTGTCCAATTGCAGGCAGGCCAGTTTGGATAGCCTCGAATGTTTGCTGC
GTCCAGCATCGCGTCGTCGCTTGCGGGATGTGGACTTAGTTTTGCCCCCT
TCTCCAGTCTTACTCTTGTCCTTCTTCTTGGCTTTCAATTCCTTTTTCGT
CGCACCATCTTTGTGATCCCTGAGCAGATGTCTCGCCAGATTCTGCGCAC
TGCTGAAACAGCGGCCGCAGTCCAAGGCCTGGCACTCGAAACGCCTGCCC
GAGTGGGCGGTGAGCATGTGCTGGCGTAGATTCCTGAGGTACGAGTAACT
CTTGCCGCATCCCTCCTCGTTGCAGGTGAAGGAGGTGGCGCACTCATCCG
TCTGCGCCGCCTCCTTGTGCTTCACCTCGAGGTGACGCTTCAGTTCGCTC
GGCTTGTCGAAGGCACTATCGCAGCGGTCGCACTTATGGCGATTCTTGCC
GTGCAACGAGTCGCGACAATGCTTCGTATACAACGTCCATTTGTCGAACT
GCAGCGGGCAGCCGGGACACTCGTACAGCTTGCAGCTGGGCTCGTGACTC
TGGCACTGCCACTGCTGGTAGAAGCCGCGCGAGCACTTCGAGCAGCTGTA
CGGATACTCCAGCGTGTGCTCCCTGATCTCGTGGCGCTTCAGCTTGAGCT
TTTGCGAGAATTTGGCACTGCACTGGCTGCACGGATAGACCTTTGGGCTC
TCGTGGGTTTCGCGCATGTGGCGGGTCATGTTGCTAACCGAGATGAACAT
CTTGCTGCACTCCTCCAGCGCGCACTTCACCGTCT
BS01114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9609-PA | 1212 | CG9609-RA | 296..1212 | 935..19 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9609-RA | 1834 | CG9609-RA | 554..1470 | 935..19 | 4585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16785479..16786395 | 19..935 | 4585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:29:28 has no hits.
BS01114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:09 Download gff for
BS01114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-PA | 296..1212 | 19..935 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:12 Download gff for
BS01114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-PA | 296..1212 | 19..935 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:14:27 Download gff for
BS01114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-RA | 554..1470 | 19..935 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:28 Download gff for
BS01114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-RA | 554..1470 | 19..935 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:28 Download gff for
BS01114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16785479..16786395 | 19..935 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:14:27 Download gff for
BS01114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16679512..16680428 | 19..935 | 100 | | Plus |
BS01114.5prime Sequence
790 bp (742 high quality bases) assembled on 2005-11-30
> BS01114.5prime
GAAGTTATCAGTCGACATGCCGCCTGGAACGCAAATTGCCAGCGACAGCG
ATATGGAGACCGCTCTGGAGGAGTTCAAGCAGCGCCAGGGACGCCGCAAC
AGCATCGGCTCGGCCAAGTACGCGTGCAGCATGCCCAAATGCGAGGCCAC
ATTCAAGCGGCTGGACCAATTGGATCGCCATGAGTATCATCACACAGGGA
TTAAGAAGCACGCCTGCTCGTACGAGGGTTGCGACAAGACGTACTCGATT
GTGACGCACTTAAAGAGGCATCTGCGCAGCACCCACGAGCGTCCGGAGTC
GGCGGCCAAGAAGACGGTGAAGTGCGCGCTGGAGGAGTGCAGCAAGATGT
TCATCTCGGTTAGCAACATGACCCGCCACATGCGCGAAACCCACGAGAGC
CCAAAGGTCTATCCGTGCAGCCAGTGCAGTGCCAAATTCTCGCAAAAGCT
CAAGCTGAAGCGCCACGAGATCAGGGAGCACACGCTGGAGTATCCGTACA
GCTGCTCGAAGTGCTCGCGCGGCTTCTACCAGCAGTGGCAGTGCCAGAGT
CACGAGCCCAGCTGCAAGCTGTACGAGTGTCCCGGCTGCCCGCTGCAGTT
CGACAAATGGACGTTGTATACGAAGCATTGTCGCGACTCGTTGCACGGCA
AGAATCGCCATAAGTGCGACCGCTGCGATAGTGCCTTCGACAAGCCGAGC
GAACTGAAGCGTCACCTCGAGGTGAAGCACAAGGAGGCGGCGCAGACGGA
TGAGTGCGCCACCTCCTTCACCCTGCACGAGGAGGGATGC
BS01114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9609-PA | 1212 | CG9609-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9609-RA | 1834 | CG9609-RA | 259..1032 | 17..790 | 3825 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16785917..16786504 | 790..203 | 2880 | 99.3 | Minus |
X | 23542271 | X | 16786565..16786750 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:24:12 has no hits.
BS01114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:10 Download gff for
BS01114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:13 Download gff for
BS01114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:24:14 Download gff for
BS01114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-RA | 259..1032 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:20 Download gff for
BS01114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-RA | 259..1032 | 17..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:20 Download gff for
BS01114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16786565..16786750 | 17..202 | 100 | | Minus |
X | 16785917..16786504 | 203..790 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:24:14 Download gff for
BS01114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16679950..16680537 | 203..790 | 99 | <- | Minus |
arm_X | 16680598..16680783 | 17..202 | 100 | | Minus |
BS01114.complete Sequence
1246 bp (1246 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634533
> BS01114.complete
GAAGTTATCAGTCGACATGCCGCCTGGAACGCAAATTGCCAGCGACAGCG
ATATGGAGACCGCTCTGGAGGAGTTCAAGCAGCGCCAGGGACGCCGCAAC
AGCATCGGCTCGGCCAAGTACGCGTGCAGCATGCCCAAATGCGAGGCCAC
ATTCAAGCGGCTGGACCAATTGGATCGCCATGAGTATCATCACACAGGGA
TTAAGAAGCACGCCTGCTCGTACGAGGGTTGCGACAAGACGTACTCGATT
GTGACGCACTTAAAGAGGCATCTGCGCAGCACCCACGAGCGTCCGGAGTC
GGCGGCCAAGAAGACGGTGAAGTGCGCGCTGGAGGAGTGCAGCAAGATGT
TCATCTCGGTTAGCAACATGACCCGCCACATGCGCGAAACCCACGAGAGC
CCAAAGGTCTATCCGTGCAGCCAGTGCAGTGCCAAATTCTCGCAAAAGCT
CAAGCTGAAGCGCCACGAGATCAGGGAGCACACGCTGGAGTATCCGTACA
GCTGCTCGAAGTGCTCGCGCGGCTTCTACCAGCAGTGGCAGTGCCAGAGT
CACGAGCCCAGCTGCAAGCTGTACGAGTGTCCCGGCTGCCCGCTGCAGTT
CGACAAATGGACGTTGTATACGAAGCATTGTCGCGACTCGTTGCACGGCA
AGAATCGCCATAAGTGCGACCGCTGCGATAGTGCCTTCGACAAGCCGAGC
GAACTGAAGCGTCACCTCGAGGTGAAGCACAAGGAGGCGGCGCAGACGGA
TGAGTGCGCCACCTCCTTCACCTGCAACGAGGAGGGATGCGGCAAGAGTT
ACTCGTACCTCAGGAATCTACGCCAGCACATGCTCACCGCCCACTCGGGC
AGGCGTTTCGAGTGCCAGGCCTTGGACTGCGGCCGCTGTTTCAGCAGTGC
GCAGAATCTGGCGAGACATCTGCTCAGGGATCACAAAGATGGTGCGACGA
AAAAGGAATTGAAAGCCAAGAAGAAGGACAAGAGTAAGACTGGAGAAGGG
GGCAAAACTAAGTCCACATCCCGCAAGCGACGACGCGATGCTGGACGCAG
CAAACATTCGAGGCTATCCAAACTGGCCTGCCTGCAATTGGACAAGGAAG
ATGATGAGGCGGTGCGCGAGCGACAGCCTTTGGTCCTCGAAAAGATCACC
CAGTCGCTGAAGGATGACCCCGTCGAGGAGCTGCTGGCACAGACCCTGCA
GGATGAAGAGGAAAAGGAGCAGGAGTAGCGAAGCTTTCTAGACCAT
BS01114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9609-RA | 1212 | CG9609-PA | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9609-RA | 1834 | CG9609-RA | 259..1470 | 17..1228 | 6060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16785479..16786504 | 1228..203 | 5130 | 100 | Minus |
X | 23542271 | X | 16786565..16786750 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:26:18 has no hits.
BS01114.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:03 Download gff for
BS01114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-RA | 1..1212 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:13 Download gff for
BS01114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-RA | 229..1440 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:56 Download gff for
BS01114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-RA | 259..1472 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:03 Download gff for
BS01114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-RA | 229..1440 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:05 Download gff for
BS01114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9609-RA | 259..1472 | 17..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:05 Download gff for
BS01114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16786565..16786750 | 17..202 | 100 | | Minus |
X | 16785477..16786504 | 203..1230 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:56 Download gff for
BS01114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16679510..16680537 | 203..1230 | 99 | <- | Minus |
arm_X | 16680598..16680783 | 17..202 | 100 | | Minus |
BS01114.pep Sequence
Translation from 16 to 1227
> BS01114.pep
MPPGTQIASDSDMETALEEFKQRQGRRNSIGSAKYACSMPKCEATFKRLD
QLDRHEYHHTGIKKHACSYEGCDKTYSIVTHLKRHLRSTHERPESAAKKT
VKCALEECSKMFISVSNMTRHMRETHESPKVYPCSQCSAKFSQKLKLKRH
EIREHTLEYPYSCSKCSRGFYQQWQCQSHEPSCKLYECPGCPLQFDKWTL
YTKHCRDSLHGKNRHKCDRCDSAFDKPSELKRHLEVKHKEAAQTDECATS
FTCNEEGCGKSYSYLRNLRQHMLTAHSGRRFECQALDCGRCFSSAQNLAR
HLLRDHKDGATKKELKAKKKDKSKTGEGGKTKSTSRKRRRDAGRSKHSRL
SKLACLQLDKEDDEAVRERQPLVLEKITQSLKDDPVEELLAQTLQDEEEK
EQE*
BS01114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9609-PA | 403 | CG9609-PA | 1..403 | 1..403 | 2185 | 100 | Plus |
CG32772-PE | 520 | CG32772-PE | 132..403 | 38..327 | 279 | 27.4 | Plus |
CG32772-PC | 520 | CG32772-PC | 132..403 | 38..327 | 279 | 27.4 | Plus |
crol-PG | 878 | CG14938-PG | 293..583 | 22..309 | 277 | 29.2 | Plus |
CG5245-PA | 501 | CG5245-PA | 49..322 | 4..306 | 273 | 26.5 | Plus |
CG5245-PA | 501 | CG5245-PA | 198..463 | 42..302 | 224 | 27.4 | Plus |
CG5245-PA | 501 | CG5245-PA | 331..491 | 34..234 | 181 | 26.9 | Plus |
CG5245-PA | 501 | CG5245-PA | 356..490 | 31..179 | 166 | 31.5 | Plus |
CG5245-PA | 501 | CG5245-PA | 367..490 | 18..150 | 156 | 35.5 | Plus |