Clone BS01118 Report

Search the DGRC for BS01118

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptM1BP-RA
Protein status:BS01118.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01118.3prime Sequence

879 bp (832 high quality bases) assembled on 2005-11-30

> BS01118.3prime
ATGGTCTAGAAAGCTTCGTTAGATGTGCAGGCTGTCCTCCTCCTCCTCCT
TGAGTTCACGTTTCTGCTCCTGCTCCAGGACCTGTTTCATCTCGGCTTTC
TCCAGATGCCGCTTGTGTACGCCAGACCGGAAGTGGGTGCTCAGGTGGGT
GGGCAGCATAAAGGACTTGTCGCACAGCTCGCACCTGTAGGCCCGCTCGC
CGGAATGTATCAGCATATGGTTCTTAAGGATGTAGCCGGTAGTGAAGGCC
TTGCCGCAAGTACCACAGACGTAGGGGCGCTCATTGGTGTGGGTACGCTC
ATGCTTCACGCGCGTGGTGTAGTCTGTGAAGCAGCGGCCACAGTACTTAC
ATGCAAACGGTCGCTCTCCGGTGTGCTTGCGCATGTGGCGTTTCAGCTCG
GAAGTTGTGCAGAAGCGCGACTGACAGAGTTCGCAGCCAAATTGCTTGTC
CCCACGATGGCGACGACAGTGAAGTTCAAAGGCCATGCGTCCCTTGATGT
GATTGCCGCACTGCTCGCAGATGTATACTCCGCCGGTGCCACGACGACGC
GCATCATCCGACCGGACCTTTGGCTTTGGCGGCAGACTACACTTCTTGAC
GACAATGTTTTCATGCTCGTACTCATCATCCAGCACGTTGTCAAGAACGG
CCACCTCATCATCCGAATCGTAGACGTACGCGTCGTTGACGTCGCCCACA
ATTAGCTCGGTGTCTTCGTCCAGCTCCAACGTTTGCTGCTGCTCTTCGTC
TTCGGCCATTATGGAATCATAGTCGGCCTCTTCAAATCAGGAGGCTGCGT
CGTCCTCGCCGGCGTGTCCCTCGGCCACCTCGTAGTAGGTATTATCGTAC
TCTACCTTGGTGTCGTCGATCTCTTCCTT

BS01118.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9797-PA 1257 CG9797-RA 491..1257 785..19 3835 100 Minus
CG9797-PA 1257 CG9797-RA 397..487 879..789 455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
M1BP-RA 1519 CG9797-RA 513..1373 879..19 4260 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8730670..8731118 431..879 2200 99.3 Plus
3R 32079331 3R 8730365..8730612 183..430 1240 100 Plus
3R 32079331 3R 8729936..8730103 19..186 840 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:38:07 has no hits.

BS01118.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:18 Download gff for BS01118.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9797-PA 397..1257 19..879 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:22 Download gff for BS01118.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9797-PA 397..1257 19..879 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:27:42 Download gff for BS01118.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9797-RA 513..1380 9..879 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:21 Download gff for BS01118.3prime
Subject Subject Range Query Range Percent Splice Strand
M1BP-RA 513..1380 9..879 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:21 Download gff for BS01118.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8729929..8730101 9..184 97 <- Plus
3R 8730367..8730612 185..430 100 <- Plus
3R 8730670..8731118 431..879 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:27:42 Download gff for BS01118.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4555651..4555823 9..184 97 <- Plus
arm_3R 4556089..4556334 185..430 100 <- Plus
arm_3R 4556392..4556840 431..879 99   Plus

BS01118.5prime Sequence

793 bp (792 high quality bases) assembled on 2005-11-30

> BS01118.5prime
GAAGTTATCAGTCGACATGTCGAAATCGGCGCTGAAACACCTAAAGAGCA
CCTGCCGCGTATGCGCAAAGTATGCAAGCAACAAGCGGTCGCCGAAGTTA
TTCGAGCGGAGCAACACAAAGATGATCGACAACATTGAGGCGCTCACAGG
CCTTCGGCTGGAGAACTACGGTTGCCTGCCGGATCAGATATGTGAATGCT
GCAGCATGGAACTGGCCTCCGCCGTTAAGCTGAGGGAGCGCTGCATCGCC
GCCCAGCGTGAGCTACTCTTGGGATTGACCGAGGAGCAACGCCAAGGCAT
CTCGGCCTTCTACCGGGCGGCTGTCATGGGCGAGGATATTGTCCAGACGG
TGAAGACGCCCGACGATGATGAGGTCTATGCCACTTATCAGGAAATCGTA
TTGGAAGAACCTAAGGAAGAGATCGACGACACCAAGGTAGAGTACGATAA
TACCTACTACGAGGTGGCCGAGGGACACGCCGGCGAGGACGACGCAGCCT
CCTTGATTGAAGAGGCCGACTATGATTCCATAATGGCCGAAGACGAAGAG
CAGCAGCAAACGTTGGAGCTGGACGAAGACACCGAGCTAATTGTGGGCGA
CGTCAACGACGCGTACGTCTACGATTCGGATGATGAGGTGGCCGTTCTTG
ACAACGTGCTGGATGATGAGTACGAGCATGAAAACATTGTCGTCAAGAAG
TGTAGTCTGCCGCCAAAGCCAAAGGTCCGGTCGGATGATGCGCGTCGTCG
TGGCACCGGCGGAGTATACATCTGCGAGCAGTGCGGCAATCAC

BS01118.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9797-PA 1257 CG9797-RA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
M1BP-RA 1519 CG9797-RA 117..893 17..793 3885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8730738..8731374 793..157 3185 100 Minus
3R 32079331 3R 8731442..8731582 157..17 705 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:02:50 has no hits.

BS01118.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:19 Download gff for BS01118.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9797-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:23 Download gff for BS01118.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9797-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:35 Download gff for BS01118.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9797-RA 117..893 17..793 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:57 Download gff for BS01118.5prime
Subject Subject Range Query Range Percent Splice Strand
M1BP-RA 117..893 17..793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:57 Download gff for BS01118.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8730738..8731373 158..793 100 <- Minus
3R 8731442..8731582 17..157 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:35 Download gff for BS01118.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4556460..4557095 158..793 100 <- Minus
arm_3R 4557164..4557304 17..157 100   Minus

BS01118.complete Sequence

1291 bp (1291 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634534

> BS01118.complete
GAAGTTATCAGTCGACATGTCGAAATCGGCGCTGAAACACCTAAAGAGCA
CCTGCCGCGTATGCGCAAAGTATGCAAGCAACAAGCGGTCGCCGAAGTTA
TTCGAGCGGAGCAACACAAAGATGATCGACAACATTGAGGCGCTCACAGG
CCTTCGGCTGGAGAACTACGGTTGCCTGCCGGATCAGATATGTGAATGCT
GCAGCATGGAACTGGCCTCCGCCGTTAAGCTGAGGGAGCGCTGCATCGCC
GCCCAGCGTGAGCTACTCTTGGGATTGACCGAGGAGCAACGCCAAGGCAT
CTCGGCCTTCTACCGGGCGGCTGTCATGGGCGAGGATATTGTCCAGACGG
TGAAGACGCCCGACGATGATGAGGTCTATGCCACTTATCAGGAAATCGTA
TTGGAAGAACCTAAGGAAGAGATCGACGACACCAAGGTAGAGTACGATAA
TACCTACTACGAGGTGGCCGAGGGACACGCCGGCGAGGACGACGCAGCCT
CCTTGATTGAAGAGGCCGACTATGATTCCATAATGGCCGAAGACGAAGAG
CAGCAGCAAACGTTGGAGCTGGACGAAGACACCGAGCTAATTGTGGGCGA
CGTCAACGACGCGTACGTCTACGATTCGGATGATGAGGTGGCCGTTCTTG
ACAACGTGCTGGATGATGAGTACGAGCATGAAAACATTGTCGTCAAGAAG
TGTAGTCTGCCGCCAAAGCCAAAGGTCCGGTCGGATGATGCGCGTCGTCG
TGGCACCGGCGGAGTATACATCTGCGAGCAGTGCGGCAATCACATCAAGG
GACGCATGGCCTTTGAACTTCACTGTCGTCGCCATCGTGGGGACAAGCAA
TTTGGCTGCGAACTCTGTCAGTCGCGCTTCTGCACAACTTCCGAGCTGAA
ACGCCACATGCGCAAGCACACCGGAGAGCGACCGTTTGCATGTAAGTACT
GTGGCCGCTGCTTCACAGACTACACCACGCGCGTGAAGCATGAGCGTACC
CACACCAATGAGCGCCCCTACGTCTGTGGTACTTGCGGCAAGGCCTTCAC
TACCGGCTACATCCTTAAGAACCATATGCTGATACATTCCGGCGAGCGGG
CCTACAGGTGCGAGCTGTGCGACAAGTCCTTTATGCTGCCCACCCACCTG
AGCACCCACTTCCGGTCTGGCGTACACAAGCGGCATCTGGAGAAAGCCGA
GATGAAACAGGTCCTGGAGCAGGAGCAGAAACGTGAACTCAAGGAGGAGG
AGGAGGACAGCCTGCACATCTAACGAAGCTTTCTAGACCAT

BS01118.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
M1BP-RA 1257 CG9797-PA 1..1257 17..1273 6285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
M1BP-RA 1519 CG9797-RA 117..1373 17..1273 6285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8730670..8731374 861..157 3525 100 Minus
3R 32079331 3R 8730365..8730612 1109..862 1240 100 Minus
3R 32079331 3R 8729936..8730103 1273..1106 840 100 Minus
3R 32079331 3R 8731442..8731582 157..17 705 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:48:36 has no hits.

BS01118.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:04 Download gff for BS01118.complete
Subject Subject Range Query Range Percent Splice Strand
CG9797-RA 1..1257 17..1273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:15 Download gff for BS01118.complete
Subject Subject Range Query Range Percent Splice Strand
CG9797-RA 113..1376 17..1283 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:46 Download gff for BS01118.complete
Subject Subject Range Query Range Percent Splice Strand
CG9797-RA 117..1375 17..1275 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:04 Download gff for BS01118.complete
Subject Subject Range Query Range Percent Splice Strand
CG9797-RA 113..1376 17..1283 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:22 Download gff for BS01118.complete
Subject Subject Range Query Range Percent Splice Strand
M1BP-RA 117..1375 17..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:22 Download gff for BS01118.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8729934..8730101 1108..1275 99 <- Minus
3R 8730367..8730612 862..1107 100 <- Minus
3R 8730670..8731373 158..861 100 <- Minus
3R 8731442..8731582 17..157 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:46 Download gff for BS01118.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4555656..4555823 1108..1275 99 <- Minus
arm_3R 4556089..4556334 862..1107 100 <- Minus
arm_3R 4556392..4557095 158..861 100 <- Minus
arm_3R 4557164..4557304 17..157 100   Minus

BS01118.pep Sequence

Translation from 16 to 1272

> BS01118.pep
MSKSALKHLKSTCRVCAKYASNKRSPKLFERSNTKMIDNIEALTGLRLEN
YGCLPDQICECCSMELASAVKLRERCIAAQRELLLGLTEEQRQGISAFYR
AAVMGEDIVQTVKTPDDDEVYATYQEIVLEEPKEEIDDTKVEYDNTYYEV
AEGHAGEDDAASLIEEADYDSIMAEDEEQQQTLELDEDTELIVGDVNDAY
VYDSDDEVAVLDNVLDDEYEHENIVVKKCSLPPKPKVRSDDARRRGTGGV
YICEQCGNHIKGRMAFELHCRRHRGDKQFGCELCQSRFCTTSELKRHMRK
HTGERPFACKYCGRCFTDYTTRVKHERTHTNERPYVCGTCGKAFTTGYIL
KNHMLIHSGERAYRCELCDKSFMLPTHLSTHFRSGVHKRHLEKAEMKQVL
EQEQKRELKEEEEDSLHI*

BS01118.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
M1BP-PA 418 CG9797-PA 1..418 1..418 2234 100 Plus
ranshi-PA 346 CG9793-PA 6..340 13..395 758 39.8 Plus
CG8159-PB 399 CG8159-PB 2..335 9..394 636 34.7 Plus
CG11762-PA 312 CG11762-PA 2..309 9..393 561 33.2 Plus
CG18764-PA 409 CG18764-PA 5..395 13..387 504 31.5 Plus