Clone Sequence Records
BS01118.3prime Sequence
879 bp (832 high quality bases) assembled on 2005-11-30
> BS01118.3prime
ATGGTCTAGAAAGCTTCGTTAGATGTGCAGGCTGTCCTCCTCCTCCTCCT
TGAGTTCACGTTTCTGCTCCTGCTCCAGGACCTGTTTCATCTCGGCTTTC
TCCAGATGCCGCTTGTGTACGCCAGACCGGAAGTGGGTGCTCAGGTGGGT
GGGCAGCATAAAGGACTTGTCGCACAGCTCGCACCTGTAGGCCCGCTCGC
CGGAATGTATCAGCATATGGTTCTTAAGGATGTAGCCGGTAGTGAAGGCC
TTGCCGCAAGTACCACAGACGTAGGGGCGCTCATTGGTGTGGGTACGCTC
ATGCTTCACGCGCGTGGTGTAGTCTGTGAAGCAGCGGCCACAGTACTTAC
ATGCAAACGGTCGCTCTCCGGTGTGCTTGCGCATGTGGCGTTTCAGCTCG
GAAGTTGTGCAGAAGCGCGACTGACAGAGTTCGCAGCCAAATTGCTTGTC
CCCACGATGGCGACGACAGTGAAGTTCAAAGGCCATGCGTCCCTTGATGT
GATTGCCGCACTGCTCGCAGATGTATACTCCGCCGGTGCCACGACGACGC
GCATCATCCGACCGGACCTTTGGCTTTGGCGGCAGACTACACTTCTTGAC
GACAATGTTTTCATGCTCGTACTCATCATCCAGCACGTTGTCAAGAACGG
CCACCTCATCATCCGAATCGTAGACGTACGCGTCGTTGACGTCGCCCACA
ATTAGCTCGGTGTCTTCGTCCAGCTCCAACGTTTGCTGCTGCTCTTCGTC
TTCGGCCATTATGGAATCATAGTCGGCCTCTTCAAATCAGGAGGCTGCGT
CGTCCTCGCCGGCGTGTCCCTCGGCCACCTCGTAGTAGGTATTATCGTAC
TCTACCTTGGTGTCGTCGATCTCTTCCTT
BS01118.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9797-PA | 1257 | CG9797-RA | 491..1257 | 785..19 | 3835 | 100 | Minus |
CG9797-PA | 1257 | CG9797-RA | 397..487 | 879..789 | 455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M1BP-RA | 1519 | CG9797-RA | 513..1373 | 879..19 | 4260 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8730670..8731118 | 431..879 | 2200 | 99.3 | Plus |
3R | 32079331 | 3R | 8730365..8730612 | 183..430 | 1240 | 100 | Plus |
3R | 32079331 | 3R | 8729936..8730103 | 19..186 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:38:07 has no hits.
BS01118.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:18 Download gff for
BS01118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9797-PA | 397..1257 | 19..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:22 Download gff for
BS01118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9797-PA | 397..1257 | 19..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:27:42 Download gff for
BS01118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9797-RA | 513..1380 | 9..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:21 Download gff for
BS01118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M1BP-RA | 513..1380 | 9..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:21 Download gff for
BS01118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8729929..8730101 | 9..184 | 97 | <- | Plus |
3R | 8730367..8730612 | 185..430 | 100 | <- | Plus |
3R | 8730670..8731118 | 431..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:27:42 Download gff for
BS01118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4555651..4555823 | 9..184 | 97 | <- | Plus |
arm_3R | 4556089..4556334 | 185..430 | 100 | <- | Plus |
arm_3R | 4556392..4556840 | 431..879 | 99 | | Plus |
BS01118.5prime Sequence
793 bp (792 high quality bases) assembled on 2005-11-30
> BS01118.5prime
GAAGTTATCAGTCGACATGTCGAAATCGGCGCTGAAACACCTAAAGAGCA
CCTGCCGCGTATGCGCAAAGTATGCAAGCAACAAGCGGTCGCCGAAGTTA
TTCGAGCGGAGCAACACAAAGATGATCGACAACATTGAGGCGCTCACAGG
CCTTCGGCTGGAGAACTACGGTTGCCTGCCGGATCAGATATGTGAATGCT
GCAGCATGGAACTGGCCTCCGCCGTTAAGCTGAGGGAGCGCTGCATCGCC
GCCCAGCGTGAGCTACTCTTGGGATTGACCGAGGAGCAACGCCAAGGCAT
CTCGGCCTTCTACCGGGCGGCTGTCATGGGCGAGGATATTGTCCAGACGG
TGAAGACGCCCGACGATGATGAGGTCTATGCCACTTATCAGGAAATCGTA
TTGGAAGAACCTAAGGAAGAGATCGACGACACCAAGGTAGAGTACGATAA
TACCTACTACGAGGTGGCCGAGGGACACGCCGGCGAGGACGACGCAGCCT
CCTTGATTGAAGAGGCCGACTATGATTCCATAATGGCCGAAGACGAAGAG
CAGCAGCAAACGTTGGAGCTGGACGAAGACACCGAGCTAATTGTGGGCGA
CGTCAACGACGCGTACGTCTACGATTCGGATGATGAGGTGGCCGTTCTTG
ACAACGTGCTGGATGATGAGTACGAGCATGAAAACATTGTCGTCAAGAAG
TGTAGTCTGCCGCCAAAGCCAAAGGTCCGGTCGGATGATGCGCGTCGTCG
TGGCACCGGCGGAGTATACATCTGCGAGCAGTGCGGCAATCAC
BS01118.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9797-PA | 1257 | CG9797-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M1BP-RA | 1519 | CG9797-RA | 117..893 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8730738..8731374 | 793..157 | 3185 | 100 | Minus |
3R | 32079331 | 3R | 8731442..8731582 | 157..17 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:02:50 has no hits.
BS01118.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:19 Download gff for
BS01118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9797-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:23 Download gff for
BS01118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9797-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:35 Download gff for
BS01118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9797-RA | 117..893 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:57 Download gff for
BS01118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M1BP-RA | 117..893 | 17..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:57 Download gff for
BS01118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8730738..8731373 | 158..793 | 100 | <- | Minus |
3R | 8731442..8731582 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:35 Download gff for
BS01118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4556460..4557095 | 158..793 | 100 | <- | Minus |
arm_3R | 4557164..4557304 | 17..157 | 100 | | Minus |
BS01118.complete Sequence
1291 bp (1291 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634534
> BS01118.complete
GAAGTTATCAGTCGACATGTCGAAATCGGCGCTGAAACACCTAAAGAGCA
CCTGCCGCGTATGCGCAAAGTATGCAAGCAACAAGCGGTCGCCGAAGTTA
TTCGAGCGGAGCAACACAAAGATGATCGACAACATTGAGGCGCTCACAGG
CCTTCGGCTGGAGAACTACGGTTGCCTGCCGGATCAGATATGTGAATGCT
GCAGCATGGAACTGGCCTCCGCCGTTAAGCTGAGGGAGCGCTGCATCGCC
GCCCAGCGTGAGCTACTCTTGGGATTGACCGAGGAGCAACGCCAAGGCAT
CTCGGCCTTCTACCGGGCGGCTGTCATGGGCGAGGATATTGTCCAGACGG
TGAAGACGCCCGACGATGATGAGGTCTATGCCACTTATCAGGAAATCGTA
TTGGAAGAACCTAAGGAAGAGATCGACGACACCAAGGTAGAGTACGATAA
TACCTACTACGAGGTGGCCGAGGGACACGCCGGCGAGGACGACGCAGCCT
CCTTGATTGAAGAGGCCGACTATGATTCCATAATGGCCGAAGACGAAGAG
CAGCAGCAAACGTTGGAGCTGGACGAAGACACCGAGCTAATTGTGGGCGA
CGTCAACGACGCGTACGTCTACGATTCGGATGATGAGGTGGCCGTTCTTG
ACAACGTGCTGGATGATGAGTACGAGCATGAAAACATTGTCGTCAAGAAG
TGTAGTCTGCCGCCAAAGCCAAAGGTCCGGTCGGATGATGCGCGTCGTCG
TGGCACCGGCGGAGTATACATCTGCGAGCAGTGCGGCAATCACATCAAGG
GACGCATGGCCTTTGAACTTCACTGTCGTCGCCATCGTGGGGACAAGCAA
TTTGGCTGCGAACTCTGTCAGTCGCGCTTCTGCACAACTTCCGAGCTGAA
ACGCCACATGCGCAAGCACACCGGAGAGCGACCGTTTGCATGTAAGTACT
GTGGCCGCTGCTTCACAGACTACACCACGCGCGTGAAGCATGAGCGTACC
CACACCAATGAGCGCCCCTACGTCTGTGGTACTTGCGGCAAGGCCTTCAC
TACCGGCTACATCCTTAAGAACCATATGCTGATACATTCCGGCGAGCGGG
CCTACAGGTGCGAGCTGTGCGACAAGTCCTTTATGCTGCCCACCCACCTG
AGCACCCACTTCCGGTCTGGCGTACACAAGCGGCATCTGGAGAAAGCCGA
GATGAAACAGGTCCTGGAGCAGGAGCAGAAACGTGAACTCAAGGAGGAGG
AGGAGGACAGCCTGCACATCTAACGAAGCTTTCTAGACCAT
BS01118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M1BP-RA | 1257 | CG9797-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M1BP-RA | 1519 | CG9797-RA | 117..1373 | 17..1273 | 6285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8730670..8731374 | 861..157 | 3525 | 100 | Minus |
3R | 32079331 | 3R | 8730365..8730612 | 1109..862 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 8729936..8730103 | 1273..1106 | 840 | 100 | Minus |
3R | 32079331 | 3R | 8731442..8731582 | 157..17 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:48:36 has no hits.
BS01118.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:04 Download gff for
BS01118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9797-RA | 1..1257 | 17..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:15 Download gff for
BS01118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9797-RA | 113..1376 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:46 Download gff for
BS01118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9797-RA | 117..1375 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:04 Download gff for
BS01118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9797-RA | 113..1376 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:22 Download gff for
BS01118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M1BP-RA | 117..1375 | 17..1275 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:22 Download gff for
BS01118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8729934..8730101 | 1108..1275 | 99 | <- | Minus |
3R | 8730367..8730612 | 862..1107 | 100 | <- | Minus |
3R | 8730670..8731373 | 158..861 | 100 | <- | Minus |
3R | 8731442..8731582 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:46 Download gff for
BS01118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4555656..4555823 | 1108..1275 | 99 | <- | Minus |
arm_3R | 4556089..4556334 | 862..1107 | 100 | <- | Minus |
arm_3R | 4556392..4557095 | 158..861 | 100 | <- | Minus |
arm_3R | 4557164..4557304 | 17..157 | 100 | | Minus |
BS01118.pep Sequence
Translation from 16 to 1272
> BS01118.pep
MSKSALKHLKSTCRVCAKYASNKRSPKLFERSNTKMIDNIEALTGLRLEN
YGCLPDQICECCSMELASAVKLRERCIAAQRELLLGLTEEQRQGISAFYR
AAVMGEDIVQTVKTPDDDEVYATYQEIVLEEPKEEIDDTKVEYDNTYYEV
AEGHAGEDDAASLIEEADYDSIMAEDEEQQQTLELDEDTELIVGDVNDAY
VYDSDDEVAVLDNVLDDEYEHENIVVKKCSLPPKPKVRSDDARRRGTGGV
YICEQCGNHIKGRMAFELHCRRHRGDKQFGCELCQSRFCTTSELKRHMRK
HTGERPFACKYCGRCFTDYTTRVKHERTHTNERPYVCGTCGKAFTTGYIL
KNHMLIHSGERAYRCELCDKSFMLPTHLSTHFRSGVHKRHLEKAEMKQVL
EQEQKRELKEEEEDSLHI*
BS01118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M1BP-PA | 418 | CG9797-PA | 1..418 | 1..418 | 2234 | 100 | Plus |
ranshi-PA | 346 | CG9793-PA | 6..340 | 13..395 | 758 | 39.8 | Plus |
CG8159-PB | 399 | CG8159-PB | 2..335 | 9..394 | 636 | 34.7 | Plus |
CG11762-PA | 312 | CG11762-PA | 2..309 | 9..393 | 561 | 33.2 | Plus |
CG18764-PA | 409 | CG18764-PA | 5..395 | 13..387 | 504 | 31.5 | Plus |