Clone Sequence Records
BS01120.3prime Sequence
878 bp (789 high quality bases) assembled on 2005-11-30
> BS01120.3prime
ATGGTCTAGAAAGCTTCGTTACCCATCCGCTTGGACAGTAGCATCCATTT
TTGGCATTTTTGACTGCTCCTCAACTTTCAGGCGATGGTGCTTCGACTTG
TAGTGGGTGGCCAGGGCGTTCCTTCTATTGAAGAACGTTTGGCAGAGCTC
GCAGTGGAATGGCTGTTCCCCCGTGTGGACCACGATGTGGTCCTTGAGAG
CCGTCGAAGTCTTGAAGGCCTTCTGGCATGTGGAGCACACGTGTGGTCGG
TGGACGGGACTCTCCTTGTGGTTGCGCTCGTGGTTCAGCCGCTTGAGGCA
GTTGTCAAATCGCTTGCCGCAGTACTTGCACACGTAGGGCAGCTCCCCGC
GATGCTTAATCCGCACGTGCAAATTGAGCAGGTGTTGGGTGAACTCCATG
CGGTCGCACTCCTGGCACTGGAACTCCTTGGTGCCCTTGTGCCGTCTGAG
GTGCACATTGAAGTTGCCCTTCTCGCTAAAAGTTTTGCCGCATTGGTCGC
AGAAATATAGTCGGTGCTCCAGTGCATAGGCTCTTTTGGCAGCTCCCCAT
TTGTTTCGTGTGGCATACTTTTCCTCTTTGGTCTTATTGGTAGTTGAGTC
AATATTCTCTATTTTAGCCATGTCCTTGCCAGGACACTCCTCTAAGCACC
CTTTGCTCCTCGGTTTTCTTCGGTTTTTCTGTACTTCCCCGATGACTTGT
AGTGTTCTGGGCTCTTCCTTCATGACTTGNGGCATTTCGGATGCTGGCTC
TTCGTGATTCATGGACTCCACTGGATAATCAGATGAAAGCTGAAGCTCGC
TCTTCACCTGAATAGGATCCTCGCACCGGAGAGGATCGACGAGATCGGCA
GGCGGTATTTCCGGGACAACTAAAGGGT
BS01120.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-PA | 1266 | CG17806-RA | 407..1266 | 878..19 | 4256 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-RA | 1613 | CG17806-RA | 501..1360 | 878..19 | 4274 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17801987..17802710 | 155..878 | 3594 | 99.7 | Plus |
| 3R | 32079331 | 3R | 17801795..17801930 | 19..154 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:59:35 has no hits.
BS01120.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:23 Download gff for
BS01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-PA | 407..1266 | 19..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:28 Download gff for
BS01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-PA | 407..1266 | 19..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:11:23 Download gff for
BS01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 501..1360 | 19..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:06 Download gff for
BS01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 501..1360 | 19..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:06 Download gff for
BS01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17801795..17801930 | 19..154 | 100 | <- | Plus |
| 3R | 17801987..17802710 | 155..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:11:23 Download gff for
BS01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13627517..13627652 | 19..154 | 100 | <- | Plus |
| arm_3R | 13627709..13628432 | 155..878 | 99 | | Plus |
BS01120.5prime Sequence
927 bp (812 high quality bases) assembled on 2005-11-30
> BS01120.5prime
GAAGTTATCAGTCGACATGACCACGCTGTGCCGCACCTGTGGCCAGGAGG
CGGAGCACGCCAAGTCACTTTTCGATAAGGAGGCCAGAGATGTCCTGAGC
AACATCCTCAAGCTGACGGGCTTTTGGTTGAGGAACCAGCCAGGTGTGCC
AACGAGGATCTGCTTATCCTGCTTGCTGGATCTGAACGATGCCATCGCAT
TCCGGGAGCGCTGCATCAGGACCAATTCGTCTTGGTTCGAAAAGCAGGGC
AAACAAGAGGATTCGGACACTGAGACTGCAAGGGAAGGCGGGAATAACAG
GTTAGAAAGTAGGGTGGATGTTATGCCCATTAGTATTGCACAGCCGCAAA
GGAGAAGGATTCTACCACAACGCAGCAAGAAAGTGGATGGAGTGCCTCTT
AAGACAGTAGAAACCCCAATTTACCCTTTAGTTGTCCCGGAAATACCGCC
TGCCGATCTCGTCGATCCTCTCCGGTGCGAGGATCCTATTCAGGTGAAGA
GCGAGCCTCAGCTTTCATCTGATTATCCAGTGGAGTCCATGAATCACGAA
GAGCCAGCATCCGAAATGCCCCAAGTCATGAAGGAAGAGCCCAGAACACT
ACAAGTCATCGGGGAAGTACAGAAAAACCGAAGAAAACCGAGGAGCAAAG
GGTGCTTAGAGGAGTGTCCTGGCAAGGACATGGCTAANATAGAGAATATT
GACTCAACTACCAATAAGACCAAAGAGGAAAAGTATGCCACACGAAACAA
ATGGGGAGCTGCCAAAAGAGCCTATGCACTGGAGCACCGACTATATTTCT
GCGACCAATGCGGCAAAACTTTTAGCGAGAAGGGCAACTTCAATGTGCAC
CTCAGACGGCACAAGGGCACCAAGGAGTTCCAGTGCCCAGAGTGCGACCG
CATGGAGTTCACCCCACACCTGCTTCA
BS01120.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-PA | 1266 | CG17806-RA | 1..908 | 17..924 | 4446 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-RA | 1613 | CG17806-RA | 95..1002 | 17..924 | 4484 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17802209..17803006 | 924..127 | 3934 | 99.5 | Minus |
| 3R | 32079331 | 3R | 17803056..17803166 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:02:38 has no hits.
BS01120.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:24 Download gff for
BS01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:29 Download gff for
BS01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:33 Download gff for
BS01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 92..1003 | 10..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:56 Download gff for
BS01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 92..1003 | 10..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:56 Download gff for
BS01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17802208..17803005 | 128..926 | 99 | <- | Minus |
| 3R | 17803056..17803169 | 10..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:33 Download gff for
BS01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13627930..13628727 | 128..926 | 99 | <- | Minus |
| arm_3R | 13628778..13628891 | 10..127 | 96 | | Minus |
BS01120.complete Sequence
1300 bp (1300 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634535
> BS01120.complete
GAAGTTATCAGTCGACATGACCACGCTGTGCCGCACCTGTGGCCAGGAGG
CGGAGCACGCCAAGTCACTTTTCGATAAGGAGGCCAGAGATGTCCTGAGC
AACATCCTCAAGCTGACGGGCTTTTGGTTGAGGAACCAGCCAGGTGTGCC
AACGAGGATCTGCTTATCCTGCTTGCTGGATCTGAACGATGCCATCGCAT
TCCGGGAGCGCTGCATCAGGACCAATTCGTCTTGGTTCGAAAAGCAGGGC
AAACAAGAGGATTCGGACACTGAGACTGCAAGGGAAGGCGGGAATAACAG
GTTAGAAAGTAGGGTGGATGTTATGCCCATTAGTATTGCACAGCCGCAAA
GGAGAAGGATTCTACCACAACGCAGCAAGAAAGTGGATGGAGTGCCTCTT
AAGACAGTAGAAACCCCAATTTACCCTTTAGTTGTCCCGGAAATACCGCC
TGCCGATCTCGTCGATCCTCTCCGGTGCGAGGATCCTATTCAGGTGAAGA
GCGAGCCTCAGCTTTCATCTGATTATCCAGTGGAGTCCATGAATCACGAA
GAGCCAGCATCCGAAATGCCCCAAGTCATGAAGGAAGAGCCCAGAACACT
ACAAGTCATCGGGGAAGTACAGAAAAACCGAAGAAAACCGAGGAGCAAAG
GGTGCTTAGAGGAGTGTCCTGGCAAGGACATGGCTAAAATAGAGAATATT
GACTCAACTACCAATAAGACCAAAGAGGAAAAGTATGCCACACGAAACAA
ATGGGGAGCTGCCAAAAGAGCCTATGCACTGGAGCACCGACTATATTTCT
GCGACCAATGCGGCAAAACTTTTAGCGAGAAGGGCAACTTCAATGTGCAC
CTCAGACGGCACAAGGGCACCAAGGAGTTCCAGTGCCAGGAGTGCGACCG
CATGGAGTTCACCCAACACCTGCTCAATTTGCACGTGCGGATTAAGCATC
GCGGGGAGCTGCCCTACGTGTGCAAGTACTGCGGCAAGCGATTTGACAAC
TGCCTCAAGCGGCTGAACCACGAGCGCAACCACAAGGAGAGTCCCGTCCA
CCGACCACACGTGTGCTCCACATGCCAGAAGGCCTTCAAGACTTCGACGG
CTCTCAAGGACCACATCGTGGTCCACACGGGGGAACAGCCATTCCACTGC
GAGCTCTGCCAAACGTTCTTCAATAGAAGGAACGCCCTGGCCACCCACTA
CAAGTCGAAGCACCATCGCCTGAAAGTTGAGGAGCAGTCAAAAATGCCAA
AAATGGATGCTACTGTCCAAGCGGATGGGTAACGAAGCTTTCTAGACCAT
BS01120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-RA | 1266 | CG17806-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-RA | 1613 | CG17806-RA | 95..1360 | 17..1282 | 6330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17801987..17803006 | 1146..127 | 5100 | 100 | Minus |
| 3R | 32079331 | 3R | 17801795..17801930 | 1282..1147 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 17803056..17803166 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:53:55 has no hits.
BS01120.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:05 Download gff for
BS01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 1..1266 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:16 Download gff for
BS01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 61..1329 | 10..1282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:14 Download gff for
BS01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 95..1360 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:06 Download gff for
BS01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 61..1329 | 10..1282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:11 Download gff for
BS01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 95..1360 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:11 Download gff for
BS01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17801791..17801930 | 1147..1284 | 98 | <- | Minus |
| 3R | 17801987..17803005 | 128..1146 | 100 | <- | Minus |
| 3R | 17803056..17803166 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:14 Download gff for
BS01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13627513..13627652 | 1147..1284 | 98 | <- | Minus |
| arm_3R | 13627709..13628727 | 128..1146 | 100 | <- | Minus |
| arm_3R | 13628778..13628888 | 17..127 | 100 | | Minus |
BS01120.pep Sequence
Translation from 16 to 1281
> BS01120.pep
MTTLCRTCGQEAEHAKSLFDKEARDVLSNILKLTGFWLRNQPGVPTRICL
SCLLDLNDAIAFRERCIRTNSSWFEKQGKQEDSDTETAREGGNNRLESRV
DVMPISIAQPQRRRILPQRSKKVDGVPLKTVETPIYPLVVPEIPPADLVD
PLRCEDPIQVKSEPQLSSDYPVESMNHEEPASEMPQVMKEEPRTLQVIGE
VQKNRRKPRSKGCLEECPGKDMAKIENIDSTTNKTKEEKYATRNKWGAAK
RAYALEHRLYFCDQCGKTFSEKGNFNVHLRRHKGTKEFQCQECDRMEFTQ
HLLNLHVRIKHRGELPYVCKYCGKRFDNCLKRLNHERNHKESPVHRPHVC
STCQKAFKTSTALKDHIVVHTGEQPFHCELCQTFFNRRNALATHYKSKHH
RLKVEEQSKMPKMDATVQADG*
BS01120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-PA | 421 | CG17806-PA | 1..421 | 1..421 | 2276 | 100 | Plus |
| CG17802-PA | 439 | CG17802-PA | 1..436 | 1..415 | 510 | 29.8 | Plus |
| CG18764-PA | 409 | CG18764-PA | 1..400 | 1..405 | 468 | 30 | Plus |
| ranshi-PA | 346 | CG9793-PA | 5..338 | 4..406 | 446 | 29.1 | Plus |
| CG8159-PB | 399 | CG8159-PB | 2..334 | 1..406 | 428 | 28.3 | Plus |
