Clone BS01122 Report

Search the DGRC for BS01122

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:22
Vector:pDNR-Dual
Associated Gene/Transcriptvis-RA
Protein status:BS01122.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01122.3prime Sequence

907 bp (807 high quality bases) assembled on 2005-11-30

> BS01122.3prime
ATGGTCTAGAAAGCTTCGCTAGTCTCCCATGTAAACGAAATCGTCATCCT
GGACGTCATCGTTTTGGCGCACAGCCATGGCAGTTTCCACTAGATAATAG
AGACACTTGTACTTGCCCTCCTCATCTGAACTGGTGCCCTGCGATAGAGC
AGATAATTGACTCTGGCCAGCTTCTGCTTCGGCACCGGTAAACACCTCGT
CCGCCTGTAGATTGTCACCAATGTCCTGTTGATTGGAGTTGGTAGGATCG
ATTGTCTGGATTTCTGAGGCCTGTATTATATTCAGCTCGCTTTCAAAGTC
TGTCAACTGTTGATTCACGTCACGCTTCGCAGTCTGATTGCGATTCCAGA
TGGCGGTATTCTGAACAGATGCCTTAGAACCAGAGGTACCTGGATTATTG
CCAGCCGAAGTGCTGACTTCCTCAGTCCCAAATACAGTTTTTATAACGCT
CTGCCAATCATGGGAGGTCTCGAAGCGTACTTCCTCCTCGCTGTTCGGCC
CACAGGACTCGTATCCCTGTGCACTCTCTTCGCCTTCGGACCTGTAGATG
ACACTGTCCTCGTACTCCGGCTCCATCTTGACCATTTGTCCGTTGGGGCC
CTGCACATACTGTTCAAAGTTGGTCAGCACATTGGCGATGCCCTCGTGAA
TCTCACCGGCGCCATCCACCTCCTCTGTAGCGCCAACGACCACTTCGGAA
GCAGGACTTCCGTGTGCGGGATTCGGCCCAGTCAAGTTTGCGCCCAACGC
ACTTGATCTCGAACAGTTGGGGCTAACCTTTTTGCCACGTCGCGATATGG
TGAAGTGCAGAGGATCGTTGCCCTCGCGCCTGATCATCTCGGGTAGAATG
CGGCGACGGGCATTGATGAACCAGTTGCACACTTGGAGCACCGTCAGAAT
GGCCTCC

BS01122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8821-PA 1275 vis-RA 387..1275 907..19 4420 99.8 Minus
CG8819-PA 1281 achi-RA 393..1179 907..121 3685 98.7 Minus
CG8821-PB 1575 vis-RB 1051..1575 543..19 2625 100 Minus
CG8819-PC 1668 achi-RC 1144..1566 543..121 1915 98.1 Minus
CG8819-PC 1668 achi-RC 393..758 907..542 1780 99.4 Minus
CG8821-PB 1575 vis-RB 516..665 691..542 750 100 Minus
CG8821-PB 1575 vis-RB 387..518 907..776 635 99.2 Minus
CG8819-PC 1668 achi-RC 1572..1668 115..19 485 100 Minus
CG8819-PA 1281 achi-RA 1185..1281 115..19 485 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
vis-RA 1741 CG8821-RA 480..1368 907..19 4430 99.9 Minus
achi-RA 2122 CG8819-RA 697..1585 907..19 4235 98.4 Minus
vis-RB 2124 CG8821-RB 1227..1751 543..19 2625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12509777..12509995 689..907 1080 99.5 Plus
2R 25286936 2R 12513566..12513784 689..907 1065 99.1 Plus
2R 25286936 2R 12508465..12508646 137..318 910 100 Plus
2R 25286936 2R 12512254..12512435 137..318 850 97.8 Plus
2R 25286936 2R 12509569..12509720 540..691 760 100 Plus
2R 25286936 2R 12513358..12513509 540..691 760 100 Plus
2R 25286936 2R 12508712..12508833 318..439 610 100 Plus
2R 25286936 2R 12508269..12508388 19..138 600 100 Plus
2R 25286936 2R 12512501..12512622 318..439 580 98.4 Plus
2R 25286936 2R 12508893..12508997 440..544 525 100 Plus
2R 25286936 2R 12512682..12512786 440..544 525 100 Plus
2R 25286936 2R 12512071..12512190 19..138 510 95 Plus
Blast to na_te.dros performed on 2015-02-10 16:42:34 has no hits.

BS01122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:27 Download gff for BS01122.3prime
Subject Subject Range Query Range Percent Splice Strand
vis-PA 387..1275 19..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:33 Download gff for BS01122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8821-PA 387..1275 19..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:07:14 Download gff for BS01122.3prime
Subject Subject Range Query Range Percent Splice Strand
vis-RA 563..1454 13..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:12 Download gff for BS01122.3prime
Subject Subject Range Query Range Percent Splice Strand
vis-RA 480..1371 13..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:12 Download gff for BS01122.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12508266..12508387 13..137 97 <- Plus
2R 12508466..12508645 138..317 100 <- Plus
2R 12508712..12508833 318..439 100 <- Plus
2R 12508893..12508994 440..541 100 <- Plus
2R 12509571..12509719 542..690 100 <- Plus
2R 12509779..12509995 691..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:07:14 Download gff for BS01122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8395771..8395892 13..137 97 <- Plus
arm_2R 8395971..8396150 138..317 100 <- Plus
arm_2R 8396217..8396338 318..439 100 <- Plus
arm_2R 8396398..8396499 440..541 100 <- Plus
arm_2R 8397076..8397224 542..690 100 <- Plus
arm_2R 8397284..8397500 691..907 99   Plus

BS01122.5prime Sequence

887 bp (770 high quality bases) assembled on 2005-11-30

> BS01122.5prime
GAAGTTATCAGTCGACATGATCTCGCCGGAACAAGAGGAGGTCAACATGG
TCCTGGATCGCCATGTACGGCAGAACATAAAGGACCTGATGCACGAGGCT
CATGTCCATGCGAGCCTGCTGAACAACGAGGGACGTGACCGTTTCCACTC
GGACTCCAGTTTGGACCAGGATTCCCTTCACGCCGTCGTTGGGAATGATC
TGAGCACCGAACAAGGCGCCAACCAGGTGCAAAACTACCACGACATGATG
GTGGACAGTGAACACCACGTCGACATTAATGGGTCGCTGCGCAAACGTCG
CGGAAATCTGCCCAAGTCATCTGTAAAGATTTTAAAGCGTTGGCTTTATG
AGCACCGCTATAACGCCTATCCGAGCGATGCGGAGAAGTTCACCCTGTCC
CAGGAGGCCAATCTGACGGTGCTCCAAGTGTGCAACTGGTTCATCAATGC
CCGTCGCCGCATTCTACCCGAGATGATCAGGCGCGAGGGCAACGATCCTC
TGCACTTCACCATATCGCGACGTGGCAAAAAGGTTAGCCCCAACTGTTCG
AGATCAAGTGCGTTGGGCGCAAACTTGACTGGGCCGAATCCCGCACACGG
AAGTCCTGCTTCCGAAGTGGTCGTTGGCGCTACAGAGGAGGTGGATGGCG
CCGGTGAGATTCACGAGGGCATCGCCAATGTGCTGACCAACTTTGAACAG
TATGTGCAGGGCCCCAACGGACAAATGGTCAAGATGGAGCCGGAGTACGA
GGACAGTGTCATCTACAGGTCCGAGGGCGAAGAGAGTGCACAGGGATACG
AGTCCTGTGGGGCGAACAGCGAGGAGGAAGTACGCTTCGAGACCTCCCAT
GATTGGCAGAGCGTTATAAAAACTGTATTTGGGACTG

BS01122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8821-PA 1275 vis-RA 1..871 17..887 4305 99.7 Plus
CG8819-PA 1281 achi-RA 192..872 202..882 3155 98.5 Plus
CG8819-PC 1668 achi-RC 192..758 202..768 2635 98.5 Plus
CG8821-PB 1575 vis-RB 1..518 17..534 2590 100 Plus
CG8821-PB 1575 vis-RB 516..665 619..768 750 100 Plus
CG8821-PB 1575 vis-RB 1051..1171 767..887 555 98.3 Plus
CG8819-PC 1668 achi-RC 1144..1259 767..882 530 98.2 Plus
CG8819-PC 1668 achi-RC 1..167 17..183 510 92.2 Plus
CG8819-PA 1281 achi-RA 1..167 17..183 510 92.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
vis-RA 1741 CG8821-RA 94..964 17..887 4325 99.8 Plus
achi-RA 2122 CG8819-RA 305..1181 17..887 3845 96.1 Plus
achi-RD 2277 CG8819-RD 73..830 17..768 3295 95.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12509777..12510267 621..131 2455 100 Minus
2R 25286936 2R 12513566..12514062 621..131 2090 95.2 Minus
2R 25286936 2R 12509569..12509720 770..619 760 100 Minus
2R 25286936 2R 12513358..12513509 770..619 760 100 Minus
2R 25286936 2R 12510324..12510439 132..17 580 100 Minus
2R 25286936 2R 12508893..12508997 870..766 495 98.1 Minus
2R 25286936 2R 12512682..12512786 870..766 495 98.1 Minus
2R 25286936 2R 12514132..12514244 129..17 445 92.9 Minus
Blast to na_te.dros performed on 2015-02-10 03:01:27 has no hits.

BS01122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:28 Download gff for BS01122.5prime
Subject Subject Range Query Range Percent Splice Strand
vis-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:34 Download gff for BS01122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8821-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:26 Download gff for BS01122.5prime
Subject Subject Range Query Range Percent Splice Strand
vis-RA 177..1047 17..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:49 Download gff for BS01122.5prime
Subject Subject Range Query Range Percent Splice Strand
vis-RA 94..964 17..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:49 Download gff for BS01122.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12508817..12508833 871..887 100 <- Minus
2R 12508893..12508994 769..870 98 <- Minus
2R 12509571..12509719 620..768 100 <- Minus
2R 12509779..12510266 132..619 100 <- Minus
2R 12510325..12510439 17..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:26 Download gff for BS01122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8397830..8397944 17..131 100   Minus
arm_2R 8396322..8396338 871..887 100 <- Minus
arm_2R 8396398..8396499 769..870 98 <- Minus
arm_2R 8397076..8397224 620..768 100 <- Minus
arm_2R 8397284..8397771 132..619 100 <- Minus

BS01122.complete Sequence

1309 bp (1309 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634536

> BS01122.complete
GAAGTTATCAGTCGACATGATCTCGCCGGAACAAGAGGAGGTCAACATGG
TCCTGGATCGCCATGTACGGCAGAACATAAAGGACCTGATGCACGAGGCT
CATGTCCATGCGAGCCTGCTGAACAACGAGGGACGTGACCGTTTCCACTC
GGACTCCAGTTTGGACCAGGATTCCCTTCACGCCGTCGTTGGGAATGATC
TGAGCACCGAACAAGGCGCCAACCAGGTGCAAAACTACCACGACATGATG
GTGGACAGTGAACACCACGTCGACATTAATGGGTCGCTGCGCAAACGTCG
CGGAAATCTGCCCAAGTCATCTGTAAAGATTTTAAAGCGTTGGCTTTATG
AGCACCGCTATAACGCCTATCCGAGCGATGCGGAGAAGTTCACCCTGTCC
CAGGAGGCCAATCTGACGGTGCTCCAAGTGTGCAACTGGTTCATCAATGC
CCGTCGCCGCATTCTACCCGAGATGATCAGGCGCGAGGGCAACGATCCTC
TGCACTTCACCATATCGCGACGTGGCAAAAAGGTTAGCCCCAACTGTTCG
AGATCAAGTGCGTTGGGCGCAAACTTGACTGGGCCGAATCCCGCACACGG
AAGTCCTGCTTCCGAAGTGGTCGTTGGCGCTACAGAGGAGGTGGATGGCG
CCGGTGAGATTCACGAGGGCATCGCCAATGTGCTGACCAACTTTGAACAG
TATGTGCAGGGCCCCAACGGACAAATGGTCAAGATGGAGCCGGAGTACGA
GGACAGTGTCATCTACAGGTCCGAAGGCGAAGAGAGTGCACAGGGATACG
AGTCCTGTGGGCCGAACAGCGAGGAGGAAGTACGCTTCGAGACCTCCCAT
GATTGGCAGAGCGTTATAAAAACTGTATTTGGGACTGAGGAAGTCAGCAC
TTCGGCTGGCAATAATCCAGGTACCTCTGGTTCTAAGGCATCTGTTCAGA
ATACCGCCATCTGGAATCGCAATCAGACTGCGAAGCGTGACGTGAATCAA
CAGTTGACAGACTTTGAAAGCGAGCTGAATATAATACAGGCCTCAGAAAT
CCAGACAATCGATCCTACCAACTCCAATCAACAGGACATTGGTGACAATC
TACAGGCGGACGAGGTGTTTACCGGTGCCGAAGCAGAAGCTGGCCAGAGT
CAATTATCTGCTCTATCGCAGGGCACCAGTTCAGATGAGGAGGGCAAGTA
CAAGTGTCTCTATTATCTAGTGGAAACTGCCATGGCTGTGCGCCAAAACG
ATGACGTCCAGGATGACGATTTCGTTTACATGGGAGACTAGCGAAGCTTT
CTAGACCAT

BS01122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
vis-RA 1275 CG8821-PA 1..1275 17..1291 6375 100 Plus
achi-RA 1281 CG8819-PA 1..1281 17..1291 5695 96.5 Plus
achi-RD 1668 CG8819-PD 1..758 17..768 3260 95.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
vis-RA 1741 CG8821-RA 94..1368 17..1291 6375 100 Plus
achi-RA 2122 CG8819-RA 305..1585 17..1291 5695 96.5 Plus
achi-RD 2277 CG8819-RD 73..830 17..768 3260 95.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12509777..12510267 621..131 2455 100 Minus
2R 25286936 2R 12513566..12514062 621..131 2090 95.2 Minus
2R 25286936 2R 12508465..12508646 1173..992 910 100 Minus
2R 25286936 2R 12512254..12512435 1173..992 850 97.8 Minus
2R 25286936 2R 12509569..12509720 770..619 760 100 Minus
2R 25286936 2R 12513358..12513509 770..619 760 100 Minus
2R 25286936 2R 12508712..12508833 992..871 610 100 Minus
2R 25286936 2R 12508269..12508388 1291..1172 600 100 Minus
2R 25286936 2R 12510324..12510439 132..17 580 100 Minus
2R 25286936 2R 12512501..12512622 992..871 580 98.4 Minus
2R 25286936 2R 12508893..12508997 870..766 525 100 Minus
2R 25286936 2R 12512682..12512786 870..766 525 100 Minus
2R 25286936 2R 12512071..12512190 1291..1172 510 95 Minus
2R 25286936 2R 12514132..12514244 129..17 445 92.9 Minus
Blast to na_te.dros performed on 2014-11-27 15:36:37 has no hits.

BS01122.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:52 Download gff for BS01122.complete
Subject Subject Range Query Range Percent Splice Strand
vis-RA 1..1275 17..1291 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:59 Download gff for BS01122.complete
Subject Subject Range Query Range Percent Splice Strand
vis-RA 368..1645 17..1297 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:37 Download gff for BS01122.complete
Subject Subject Range Query Range Percent Splice Strand
vis-RA 177..1453 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:52 Download gff for BS01122.complete
Subject Subject Range Query Range Percent Splice Strand
vis-RA 368..1645 17..1297 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:02 Download gff for BS01122.complete
Subject Subject Range Query Range Percent Splice Strand
vis-RA 94..1370 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:02 Download gff for BS01122.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12508267..12508387 1173..1293 99 <- Minus
2R 12508466..12508645 993..1172 100 <- Minus
2R 12508712..12508833 871..992 100 <- Minus
2R 12508893..12508994 769..870 100 <- Minus
2R 12509571..12509719 620..768 100 <- Minus
2R 12509779..12510266 132..619 100 <- Minus
2R 12510325..12510439 17..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:37 Download gff for BS01122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8395772..8395892 1173..1293 99 <- Minus
arm_2R 8395971..8396150 993..1172 100 <- Minus
arm_2R 8396217..8396338 871..992 100 <- Minus
arm_2R 8396398..8396499 769..870 100 <- Minus
arm_2R 8397076..8397224 620..768 100 <- Minus
arm_2R 8397284..8397771 132..619 100 <- Minus
arm_2R 8397830..8397944 17..131 100   Minus

BS01122.pep Sequence

Translation from 16 to 1290

> BS01122.pep
MISPEQEEVNMVLDRHVRQNIKDLMHEAHVHASLLNNEGRDRFHSDSSLD
QDSLHAVVGNDLSTEQGANQVQNYHDMMVDSEHHVDINGSLRKRRGNLPK
SSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRIL
PEMIRREGNDPLHFTISRRGKKVSPNCSRSSALGANLTGPNPAHGSPASE
VVVGATEEVDGAGEIHEGIANVLTNFEQYVQGPNGQMVKMEPEYEDSVIY
RSEGEESAQGYESCGPNSEEEVRFETSHDWQSVIKTVFGTEEVSTSAGNN
PGTSGSKASVQNTAIWNRNQTAKRDVNQQLTDFESELNIIQASEIQTIDP
TNSNQQDIGDNLQADEVFTGAEAEAGQSQLSALSQGTSSDEEGKYKCLYY
LVETAMAVRQNDDVQDDDFVYMGD*

BS01122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
vis-PA 424 CG8821-PA 1..424 1..424 2209 100 Plus
achi-PA 426 CG8819-PA 1..426 1..424 2110 95.3 Plus
achi-PD 555 CG8819-PD 1..252 1..250 1243 94.4 Plus
achi-PC 555 CG8819-PC 1..252 1..250 1243 94.4 Plus
vis-PB 524 CG8821-PB 1..221 1..250 1121 88.4 Plus
achi-PD 555 CG8819-PD 370..555 244..424 868 92.5 Plus
achi-PC 555 CG8819-PC 370..555 244..424 868 92.5 Plus