Clone BS01123 Report

Search the DGRC for BS01123

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptcad-RA
Protein status:BS01123.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01123.3prime Sequence

834 bp (795 high quality bases) assembled on 2005-11-30

> BS01123.3prime
ATGGTCTAGAAAGCTTCGTCACATCGAGAGCGTGCCCACTGCCGCCGCAG
CGGACATCTGCGCACTGTGCTGCTGCTGCAGCTGGTGTGAGTGCGCCGCC
ACCGCCGCCAAGGAGTGGCTGTGGGCGGCCAGGTGGGGATGCAGGCGCAT
GGCGGGAATGTTCATCGCCGCCATGGGGTTCATCGAGTGGGCCAGCGAGT
GGGACAGGTGCAGGCCCGGCTCCAGCTTCGCTTTGGCGTCCAGCAGCTGG
CTGTAGTCCGCATGCTGCACTCCCACGCCCATCACGTTCGGATCGCTACC
CTTCTTGTTCTGCTTGCGCTCCTTGGCGCGGCGGTTCTGGAACCAGATCT
TAACCTGGCGCTCCGACAGCGACAGCGTCTGGGCGAGCTCGCTCTTCCGC
CGGATGGTGATGTAGCGGGAGGTGCAGTACTCCTTCTCCAGCTCCAGGCG
CTGGAAGTCGGTGTACACCACGCGGTACTTATCCTTGGTGCGGGTTTTGC
CTGGTTGTGGTTGTGCTGGATAGGCGGGCTTCTTCATCCAGTCGAAGTAT
GGCGGCTTCGATGGCGATGTCCTGTTGTTGTTGCTCACCGAATTGTTATT
GTTGTTGTTGTTATGGGTGGATGGGCTATTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGGCGACGGCACTCAAATGGTGTGCCAAGTGATGATGCGGC
GACGAGGCAGAAGTCGGCGCCCCCGGGCTAGAGATTTCCGAGCCCGAAAC
GGTAATCGGTGGCGACGGCAGACCTTCGGCGATGTGCTGCTGATGGTTGG
GTGGTGCGGAACCTGGTCCTCCATCGGTGGCCCC

BS01123.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1759-PA 1284 cad-RA 469..1284 834..19 4080 100 Minus
CG1759-PB 1284 cad-RB 469..1284 834..19 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
cad-RB 2353 CG1759-RB 683..1499 834..18 4085 100 Minus
cad-RA 2516 CG1759-RA 846..1662 834..18 4085 100 Minus
cad-RC 2570 CG1759-RC 1233..1716 501..18 2420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20781796..20782281 503..18 2430 100 Minus
2L 23513712 2L 20771576..20771910 834..500 1675 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:31:54 has no hits.

BS01123.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:29 Download gff for BS01123.3prime
Subject Subject Range Query Range Percent Splice Strand
cad-PA 469..1284 19..834 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:35 Download gff for BS01123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1759-PB 469..1284 19..834 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:03:42 Download gff for BS01123.3prime
Subject Subject Range Query Range Percent Splice Strand
cad-RA 846..1662 18..834 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:21 Download gff for BS01123.3prime
Subject Subject Range Query Range Percent Splice Strand
cad-RA 846..1662 18..834 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:21 Download gff for BS01123.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20771576..20771909 501..834 100 -> Minus
2L 20781799..20782281 18..500 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:03:42 Download gff for BS01123.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20771576..20771909 501..834 100 -> Minus
arm_2L 20781799..20782281 18..500 100   Minus

BS01123.5prime Sequence

809 bp (784 high quality bases) assembled on 2005-11-30

> BS01123.5prime
GAAGTTATCAGTCGACATGGTTTCGCACTACTACAACACACTGCCCTACA
CACAAAAGCACAGTGCCGCCAATTTGGCCTATGCCTCAGCGGCGGGCCAG
CCATGGAACTGGACGCCCAACTACCACCACACGCCGCCGAACCACCAGTT
CCTGGGCGATGTGGACTCCTCGCATGCCGCCCACCACGCGGCCGCTGCCC
ACCAGATGTACTACAACTCCCATCACATGTTCCACTCGGCGGCGGCGGCC
TCTGCCGGGGAGTGGCACTCACCCGCCTCGAGCACGGCGGATAACTTCGT
TCAGAATGTGCCCACGTCGGCCCACCAGCTGATGCAGCAGCACCACCATC
ATCACGCCCATGCCTCCAGCAGTTCCGCCAGTTCCGGGAGCAGCAGTAGC
GGTGGTGCACCGGGTGCGCCCCAGCTCAACGAGACCAACAGCAGCATCGG
CGTCGGAGGAGCAGGCGGTGGCGGTGGTGTTGGCGGGGCCACCGATGGAG
GACCAGGTTCCGCACCACCCAACCATCAGCAGCACATCGCCGAAGGTCTG
CCGTCGCCACCGATTACCGTTTCGGGCTCGGAAATCTCTAGCCCGGGGGC
GCCGACTTCTGCCTCGTCGCCGCATCATCACTTGGCACACCATTTGAGTG
CCGTCGCCAACAACAACAACAACAACAACAACAACAACAATAGCCCATCC
ACCCATAACAACAACAACAATAACAATTCGGTGAGCAACAACAACAGGAC
ATCGCCATCGAAGCCGCCATACTTCGACTGGATGAAGAAGCCCGCCTATC
CAGCACAAC

BS01123.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1759-PA 1284 cad-RA 1..793 17..809 3965 100 Plus
CG1759-PB 1284 cad-RB 1..793 17..809 3965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
cad-RC 2570 CG1759-RC 378..1170 17..809 3965 100 Plus
cad-RB 2353 CG1759-RB 215..1007 17..809 3965 100 Plus
cad-RA 2516 CG1759-RA 378..1170 17..809 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20771108..20771900 17..809 3965 100 Plus
Blast to na_te.dros performed 2015-02-12 06:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 5095..5139 20..64 117 73.3 Plus

BS01123.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:30 Download gff for BS01123.5prime
Subject Subject Range Query Range Percent Splice Strand
cad-PA 1..793 17..809 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:37 Download gff for BS01123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1759-PB 1..793 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:34:02 Download gff for BS01123.5prime
Subject Subject Range Query Range Percent Splice Strand
cad-RB 210..1007 12..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:39 Download gff for BS01123.5prime
Subject Subject Range Query Range Percent Splice Strand
cad-RA 373..1170 12..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:39 Download gff for BS01123.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20771103..20771900 12..809 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:34:02 Download gff for BS01123.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20771103..20771900 12..809 99   Plus

BS01123.complete Sequence

1318 bp (1318 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634537

> BS01123.complete
GAAGTTATCAGTCGACATGGTTTCGCACTACTACAACACACTGCCCTACA
CACAAAAGCACAGTGCCGCCAATTTGGCCTATGCCTCAGCGGCGGGCCAG
CCATGGAACTGGACGCCCAACTACCACCACACGCCGCCGAACCACCAGTT
CCTGGGCGATGTGGACTCCTCGCATGCCGCCCACCACGCGGCCGCTGCCC
ACCAGATGTACTACAACTCCCATCACATGTTCCACTCGGCGGCGGCGGCC
TCTGCCGGGGAGTGGCACTCACCCGCCTCGAGCACGGCGGATAACTTCGT
TCAGAATGTGCCCACGTCGGCCCACCAGCTGATGCAGCAGCACCACCATC
ATCACGCCCATGCCTCCAGCAGTTCCGCCAGTTCCGGGAGCAGCAGTAGC
GGTGGTGCACCGGGTGCGCCCCAGCTCAACGAGACCAACAGCAGCATCGG
CGTCGGAGGAGCAGGCGGTGGCGGTGGTGTTGGCGGGGCCACCGATGGAG
GACCAGGTTCCGCACCACCCAACCATCAGCAGCACATCGCCGAAGGTCTG
CCGTCGCCACCGATTACCGTTTCGGGCTCGGAAATCTCTAGCCCGGGGGC
GCCGACTTCTGCCTCGTCGCCGCATCATCACTTGGCACACCATTTGAGTG
CCGTCGCCAACAACAACAACAACAACAACAACAACAACAATAGCCCATCC
ACCCATAACAACAACAACAATAACAATTCGGTGAGCAACAACAACAGGAC
ATCGCCATCGAAGCCGCCATACTTCGACTGGATGAAGAAGCCCGCCTATC
CAGCACAACCACAACCAGGCAAAACCCGCACCAAGGATAAGTACCGCGTG
GTGTACACCGACTTCCAGCGCCTGGAGCTGGAGAAGGAGTACTGCACCTC
CCGCTACATCACCATCCGGCGGAAGAGCGAGCTCGCCCAGACGCTGTCGC
TGTCGGAGCGCCAGGTTAAGATCTGGTTCCAGAACCGCCGCGCCAAGGAG
CGCAAGCAGAACAAGAAGGGTAGCGATCCGAACGTGATGGGCGTGGGAGT
GCAGCATGCGGACTACAGCCAGCTGCTGGACGCCAAAGCGAAGCTGGAGC
CGGGCCTGCACCTGTCCCACTCGCTGGCCCACTCGATGAACCCCATGGCG
GCGATGAACATTCCCGCCATGCGCCTGCATCCCCACCTGGCCGCCCACAG
CCACTCCTTGGCGGCGGTGGCGGCGCACTCACACCAGCTGCAGCAGCAGC
ACAGTGCGCAGATGTCCGCTGCGGCGGCAGTGGGCACGCTCTCGATGTGA
CGAAGCTTTCTAGACCAT

BS01123.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
cad-RB 1284 CG1759-PB 1..1284 17..1300 6420 100 Plus
cad-RA 1284 CG1759-PA 1..1284 17..1300 6420 100 Plus
cad-RC 1338 CG1759-PC 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
cad-RB 2353 CG1759-RB 215..1499 17..1301 6425 100 Plus
cad-RA 2516 CG1759-RA 378..1662 17..1301 6425 100 Plus
cad-RC 2570 CG1759-RC 378..1179 17..818 4010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20771108..20771910 17..819 4015 100 Plus
2L 23513712 2L 20781796..20782281 816..1301 2430 100 Plus
Blast to na_te.dros performed 2014-11-28 07:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 5095..5139 20..64 117 73.3 Plus

BS01123.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:53 Download gff for BS01123.complete
Subject Subject Range Query Range Percent Splice Strand
cad-RB 1..1284 17..1300 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:34 Download gff for BS01123.complete
Subject Subject Range Query Range Percent Splice Strand
cad-RB 215..1499 17..1302 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:37 Download gff for BS01123.complete
Subject Subject Range Query Range Percent Splice Strand
cad-RA 378..1662 17..1302 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:53 Download gff for BS01123.complete
Subject Subject Range Query Range Percent Splice Strand
cad-RB 210..1499 12..1301 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:27 Download gff for BS01123.complete
Subject Subject Range Query Range Percent Splice Strand
cad-RA 378..1662 17..1302 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:27 Download gff for BS01123.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20771108..20771909 17..818 100 -> Plus
2L 20781799..20782281 819..1302 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:37 Download gff for BS01123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20771108..20771909 17..818 100 -> Plus
arm_2L 20781799..20782281 819..1302 99   Plus

BS01123.pep Sequence

Translation from 16 to 1299

> BS01123.pep
MVSHYYNTLPYTQKHSAANLAYASAAGQPWNWTPNYHHTPPNHQFLGDVD
SSHAAHHAAAAHQMYYNSHHMFHSAAAASAGEWHSPASSTADNFVQNVPT
SAHQLMQQHHHHHAHASSSSASSGSSSSGGAPGAPQLNETNSSIGVGGAG
GGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSEISSPGAPTSAS
SPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKP
PYFDWMKKPAYPAQPQPGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITI
RRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHADY
SQLLDAKAKLEPGLHLSHSLAHSMNPMAAMNIPAMRLHPHLAAHSHSLAA
VAAHSHQLQQQHSAQMSAAAAVGTLSM*

BS01123.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
cad-PB 427 CG1759-PB 1..427 1..427 2298 100 Plus
cad-PA 427 CG1759-PA 1..427 1..427 2298 100 Plus
cad-PC 445 CG1759-PC 1..445 1..427 2269 96 Plus
Scr-PB 417 CG1030-PB 78..387 58..336 266 28.2 Plus
Scr-PA 417 CG1030-PA 78..387 58..336 266 28.2 Plus