Clone Sequence Records
BS01126.3prime Sequence
896 bp (765 high quality bases) assembled on 2005-11-30
> BS01126.3prime
ATGGTCTAGAAAGCTTCGTTACAGATACTTCCGATAGTTGCGCAGATGGG
CGTTCGCGTCCTCGACCACGCCCACCGCAGCAGCGGCACTCTCGAAGGAT
GGTGGCTCGATGACCATGCCGGGACTTGTCGGATCGCATGACGCTCCAAC
GGCGCTATTTGGCCCCTTGGCTCGTCGCCTGCCACGTGTTCCAGCTCCCC
GCGATCTGCGGCTGTTGGCCGAAGCACCCGATGCTCCTCCTCCGCCGCCG
GATCCCGAAACTCCCGCTAAGCCTGCTCCCAGGCTGCCGCTTAGGATGCC
TCCGCTGGAGATTGGTCCTCCATTGCTGCCTGGCACACTCTCGCCAGATT
CAATGGCCTCCAGCGATGCGTCCAGCGCCGCATCCGTCGTTGTGATACGC
GACCTGGCCGCTGCACTGCGTCTCCGCGAGCTGGAGCTACCGCCGGAATT
GCCGCCACCGCCGGCGCCTCCTCCACCACCACCGCCGCCGGAATCTCCAC
CTCGCTTGCCTGGTCGCCGCTTGCGCCTTTTTTTGTTACCATAGCGCGGA
TCATAATCGTACTCATCATCCGCCGGCGATTTGGGCTCCTCCAGCGAGTC
CACATCGTTCATATCCATGTCATCGTAGAACCACTCCTTGGGCAAAAGCT
CCTCTTTGACGGCCTGCTGCTGGTGCTGGTGCTGCTGATGTTGTTGCTGT
TGACTGTCCTTGCTGTCGGATGTATCACCGCCGGCGGCACCCAGCGAGCT
GGACTCCTCCAGGCTGAAGGCTCCATTAAAATCGTGGGCAGTGTCACTGT
GCAGGGAACCNAGTACGGCCGGCGCGGCTCCGCCCGCCCGTAGCATATTG
AGCGTTAGGGAGGAGCTGCTGGGCCAGCTATTGCTGCCGGGCATGG
BS01126.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12175-PB | 1287 | tth-RB | 472..1287 | 834..19 | 3986 | 99.5 | Minus |
| CG12175-PB | 1287 | tth-RB | 434..464 | 872..842 | 155 | 100 | Minus |
| CG3606-PB | 1200 | caz-RB | 291..326 | 490..455 | 155 | 97.2 | Minus |
| CG3606-PA | 1200 | caz-RA | 291..326 | 490..455 | 155 | 97.2 | Minus |
| CG32809-PD | 3705 | CG32809-RD | 2479..2510 | 699..668 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-RC | 3138 | CG12175-RC | 1016..1894 | 896..18 | 4249 | 99.1 | Minus |
| tth-RB | 2955 | CG12175-RB | 833..1711 | 896..18 | 4249 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13614437..13615315 | 18..896 | 4219 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:09:53 has no hits.
BS01126.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:33 Download gff for
BS01126.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-PB | 410..1287 | 19..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:40 Download gff for
BS01126.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12175-PB | 410..1287 | 19..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:34:43 Download gff for
BS01126.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 833..1715 | 12..896 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:28:40 Download gff for
BS01126.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 833..1715 | 12..896 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:28:40 Download gff for
BS01126.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13614433..13615315 | 12..896 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:34:43 Download gff for
BS01126.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13508466..13509348 | 12..896 | 98 | | Plus |
BS01126.5prime Sequence
834 bp (831 high quality bases) assembled on 2005-11-30
> BS01126.5prime
GAAGTTATCAGTCGACATGTCCTCCGCCGTTAACATCCAGATCGTCTCTA
TGCCGAATCTGGCCAAGATCGAGAGCTTCCTGAAGGATGTCAGCTACCGG
GAGACGATCGAGTACAGTGCCAACTTCAACACGCGCTTGTGCAGCGAACG
GCGCCACCGGCTGCCCTTCCTCGATCCGCAGACAGGCGTCGCCCAGAACC
ACTCGCAGCTCTTCCTGGACAAGCGACAGCGGATGCCCGGCTTCCGGCAG
GGCCAGATCTACACGTATCCGGCGGCCCGCTGGCGGAAGAGCCGTCGTCA
GTACTTGAGCAAGATGTACAGCCGCTTTCCCGAGCGTCCCTTCCAGGCGC
TACGCAAGGAGCACGAAGCTCTGGTGGCCAGCGGCGTCAATCTGGGACTG
AGCAGCCTGACCAGCGGTGTGGGCTCCATGCCCGGCAGCAATAGCCTGGC
CAGCAGCTCCTCCCTAACGCTCAATATGCTTACGGGCGGCGGAGCCGCGC
CGGCCGTACTTGGTTCCCTGCACAGTGACACTGCCCACGATTTTAATGGA
GCCTTCAGCCTGGAGGAGTCCAGCTCGCTGGGTGCCGCCGGCGGTGATAC
ATCCGACAGCAAGGACAGTCAACAGCAACAACATCAGCAGCACCAGCACC
AGCAGCAGGCCGTCAAAGAGGAGCTTTTGCCCAAGGAGTGGTTCTACGAT
GACATGGATATGAACGATGTGGACTCGCTGGAGGAGCCCAAATCGCCGGC
GGATGATGAGTACGATTATGATCCGCGCTATGGTAACAAAAAAAGGCGCA
AGCGGCGACCAGGCAAGCGAGGTGGAGATTCCGG
BS01126.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12175-PB | 1287 | tth-RB | 1..818 | 17..834 | 4065 | 99.8 | Plus |
| CG32809-PD | 3705 | CG32809-RD | 2479..2510 | 623..654 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:55:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-RC | 3138 | CG12175-RC | 606..1424 | 16..834 | 4080 | 99.9 | Plus |
| tth-RB | 2955 | CG12175-RB | 423..1241 | 16..834 | 4080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13614907..13615424 | 834..317 | 2590 | 100 | Minus |
| X | 23542271 | X | 13615676..13615981 | 321..16 | 1515 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:55:21 has no hits.
BS01126.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:34 Download gff for
BS01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-PB | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:08:42 Download gff for
BS01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12175-PB | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:43:56 Download gff for
BS01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 419..1241 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:03 Download gff for
BS01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 419..1241 | 9..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:03 Download gff for
BS01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13615676..13615985 | 9..321 | 98 | | Minus |
| X | 13614907..13615419 | 322..834 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:43:56 Download gff for
BS01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13508940..13509452 | 322..834 | 100 | <- | Minus |
| arm_X | 13509709..13510018 | 9..321 | 98 | | Minus |
BS01126.complete Sequence
1321 bp (1321 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634538
> BS01126.complete
GAAGTTATCAGTCGACATGTCCTCCGCCGTTAACATCCAGATCGTCTCTA
TGCCGAATCTGGCCAAGATCGAGAGCTTCCTGAAGGATGTCAGCTACCGG
GAGACGATCGAGTACAGTGCCAACTTCAACACGCGCTTGTGCAGCGAACG
GCGCCACCGGCTGCCCTTCCTCGATCCGCAGACAGGCGTCGCCCAGAACC
ACTCGCAGCTCTTCCTGGACAAGCGACAGCGGATGCCCGGCTTCCGGCAG
GGCCAGATCTACACGTATCCGGCGGCCCGCTGGCGGAAGAGCCGTCGTCA
GTACTTGAGCAAGATGTACAGCCGCTTTCCCGAGCGTCCCTTCCAGGCGC
TACGCAAGGAGCACGAAGCTCTGGTGGCCAGCGGCGTCAATCTGGGACTG
AGCAGCCTGACCAGCGGTGTGGGCTCCATGCCCGGCAGCAATAGCCTGGC
CAGCAGCTCCTCCCTAACGCTCAATATGCTTACGGGCGGCGGAGCCGCGC
CGGCCGTACTTGGTTCCCTGCACAGTGACACTGCCCACGATTTTAATGGA
GCCTTCAGCCTGGAGGAGTCCAGCTCGCTGGGTGCCGCCGGCGGTGATAC
ATCCGACAGCAAGGACAGTCAACAGCAACAACATCAGCAGCACCAGCACC
AGCAGCAGGCCGTCAAAGAGGAGCTTTTGCCCAAGGAGTGGTTCTACGAT
GACATGGATATGAACGATGTGGACTCGCTGGAGGAGCCCAAATCGCCGGC
GGATGATGAGTACGATTATGATCCGCGCTATGGTAACAAAAAAAGGCGCA
AGCGGCGACCAGGCAAGCGAGGTGGAGATTCCGGCGGCGGTGGTGGTGGA
GGAGGCGCCGGCGGTGGCGGCAATTCCGGCGGTAGCTCCAGCTCGCGGAG
ACGCAGTGCAGCGGCCAGGTCGCGTATCACAACGACGGATGCGGCGCTGG
ACGCATCGCTGGAGGCCATTGAATCTGGCGAGAGTGTGCCAGGCAGCAAT
GGAGGACCAATCTCCAGCGGAGGCATCCTAAGCGGCAGCCTGGGAGCAGG
CTTAGCGGGAGTTTCGGGATCCGGCGGCGGAGGAGGAGCATCGGGTGCTT
CGGCCAACAGCCGCAGATCGCGGGGAGCTGGAACACGTGGCAGGCGACGA
GCCAAGGGGCCAAATAGCGCCGTTGGAGCGTCATGCGATCCGACAAGTCC
CGGCATGGTCATCGAGCCACCATCCTTCGAGAGTGCCGCTGCTGCGGTGG
GCGTGGTCGAGGACGCGAACGCCCATCTGCGCAACTATCGGAAGTATCTG
TAACGAAGCTTTCTAGACCAT
BS01126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-RC | 1287 | CG12175-PC | 1..1287 | 17..1303 | 6375 | 99.7 | Plus |
| tth-RB | 1287 | CG12175-PB | 1..1287 | 17..1303 | 6375 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-RC | 3138 | CG12175-RC | 606..1894 | 16..1304 | 6385 | 99.7 | Plus |
| tth-RB | 2955 | CG12175-RB | 423..1711 | 16..1304 | 6385 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13614437..13615424 | 1304..317 | 4895 | 99.7 | Minus |
| X | 23542271 | X | 13615676..13615981 | 321..16 | 1515 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:09:03 has no hits.
BS01126.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:54 Download gff for
BS01126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 1..1287 | 17..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:02 Download gff for
BS01126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 370..1666 | 9..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:21 Download gff for
BS01126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 424..1711 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:55 Download gff for
BS01126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 370..1666 | 9..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:58 Download gff for
BS01126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 424..1711 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:58 Download gff for
BS01126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13614435..13615419 | 322..1305 | 99 | <- | Minus |
| X | 13615676..13615980 | 17..321 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:21 Download gff for
BS01126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13508468..13509452 | 322..1305 | 99 | <- | Minus |
| arm_X | 13509709..13510013 | 17..321 | 99 | | Minus |
BS01126.pep Sequence
Translation from 16 to 1302
> BS01126.pep
MSSAVNIQIVSMPNLAKIESFLKDVSYRETIEYSANFNTRLCSERRHRLP
FLDPQTGVAQNHSQLFLDKRQRMPGFRQGQIYTYPAARWRKSRRQYLSKM
YSRFPERPFQALRKEHEALVASGVNLGLSSLTSGVGSMPGSNSLASSSSL
TLNMLTGGGAAPAVLGSLHSDTAHDFNGAFSLEESSSLGAAGGDTSDSKD
SQQQQHQQHQHQQQAVKEELLPKEWFYDDMDMNDVDSLEEPKSPADDEYD
YDPRYGNKKRRKRRPGKRGGDSGGGGGGGGAGGGGNSGGSSSSRRRSAAA
RSRITTTDAALDASLEAIESGESVPGSNGGPISSGGILSGSLGAGLAGVS
GSGGGGGASGASANSRRSRGAGTRGRRRAKGPNSAVGASCDPTSPGMVIE
PPSFESAAAAVGVVEDANAHLRNYRKYL*
BS01126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-PC | 428 | CG12175-PC | 1..428 | 1..428 | 2201 | 100 | Plus |
| tth-PB | 428 | CG12175-PB | 1..428 | 1..428 | 2201 | 100 | Plus |
| d4-PA | 497 | CG2682-PA | 12..275 | 9..317 | 398 | 34.9 | Plus |
| d4-PD | 496 | CG2682-PD | 12..333 | 9..359 | 397 | 32.4 | Plus |
| d4-PC | 495 | CG2682-PC | 12..332 | 9..359 | 392 | 32 | Plus |
