Clone Sequence Records
BS01134.3prime Sequence
869 bp (802 high quality bases) assembled on 2005-11-30
> BS01134.3prime
ATGGTCTAGAAAGCTTCGTTATTTCAAGACCACGTCGTGATCAAATTGCA
AGTGGTGTTCGAGCTCCTTCTTGTTCTCGAAGTTGGTATTGCAAATGAGA
CAGAAGCCGCTGTTCTCATCGTTGTCGGACATGATGACGGTGACGGCCGC
CTCCGATTCGTCGACGTCCACATGCAGCTCCTCCACCACCTGCTGCTCGT
CGGCGGGCGCCTCCTCGCGAACCCCGTAAACGACGTCGCCCTCGTGGGTC
TTCATGTGCATCTTGAGGGTGTAGCGCTCGGTGAAGGACTTGGGGCAGAC
GGAGCAGTAGTGTCTTGGGCGGTTCTCCTTGTGAATGAGCGTGTGATGGT
TGAAGGTCTTGCGCGACTTGAACGACACATTGCAGATGCTGCATATGATG
GGGTTCTCCTCAGCCTCGTGGCGCAGCCGGTGGTTGTAGAGTAGGTTGTC
CTGGGAGAACCTCAGGCCGCACTTCTCGCACTGGTACTTCTTCTTGTCCC
AGTGCATGCGCATGTGGCGCAGGGTGTTCACCGGGCGCGAGAAGCTCTTG
GGGCAGTAGCGGCATTGCTTTTCCGTCTTGCCCTCGTGCAGATTCATGTG
CAGCTCCAAGTACTCCTCGTCGCGCCGGATCACCCCGCAGATGGGGCAGA
TGTGGTTGGGCTGCTTGGAGTGCTCCTCGCTGATGTGCTTCTGCAGTTGA
TACCAGGAGTTGTACACCTTGCCGCANGTAGTGCACTCCTGCTTGACGCG
CTTCTTCGTCGGCCTGTCCTCGCCATCGGAGGACTTGCCATACAGGGCCT
CGGAGTCGCCCACATCCACGTCCTCGCAGATGAACTCGTCGTCGTCGTCG
TCGTCCTCCTCCTCCTCCT
BS01134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17958-PA | 1302 | Sry-delta-RA | 452..1302 | 869..19 | 4236 | 99.8 | Minus |
CG7938-PA | 1071 | Sry-beta-RA | 749..789 | 506..466 | 180 | 97.5 | Minus |
CG3918-PA | 966 | CG3918-RA | 631..664 | 836..869 | 170 | 100 | Plus |
CG17958-PA | 1302 | Sry-delta-RA | 451..482 | 867..836 | 135 | 96.8 | Minus |
CG3918-PA | 966 | CG3918-RA | 634..665 | 836..867 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-delta-RA | 1546 | CG17958-RA | 590..1440 | 869..19 | 4244 | 99.9 | Minus |
Sry-beta-RB | 3300 | CG7938-RB | 746..883 | 603..466 | 300 | 81.2 | Minus |
Sry-beta-RA | 1260 | CG7938-RA | 746..883 | 603..466 | 300 | 81.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30043930..30044780 | 869..19 | 4244 | 99.9 | Minus |
3R | 32079331 | 3R | 30040517..30040654 | 603..466 | 300 | 81.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:24:03 has no hits.
BS01134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:48 Download gff for
BS01134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17958-PA | 452..1302 | 19..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:01 Download gff for
BS01134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17958-PA | 452..1302 | 19..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:13:30 Download gff for
BS01134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 590..1443 | 12..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:39 Download gff for
BS01134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 590..1443 | 12..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:39 Download gff for
BS01134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30043930..30044783 | 12..869 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:13:30 Download gff for
BS01134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25869652..25870505 | 12..869 | 99 | | Minus |
BS01134.5prime Sequence
886 bp (761 high quality bases) assembled on 2005-11-30
> BS01134.5prime
GAAGTTATCAGTCGACATGGATACTTGCTTCTTCTGCGGCGCCGTCGATC
TGAGCGACACGGGCTCCTCCAGCTCCATGCGCTACGAGACGCTGTCGGCC
AAGGTGCCGTCGTCGCAGAAAACAGTGTCCCTGGTGCTCACCCACCTGGC
CAACTGCATCCAGACGCAGCTGGACCTGAAGCCCGGCGCCCGGCTGTGCC
CGCGCTGCTTTCAGGAGCTCTCCGACTACGACACGATCATGGTGAACCTG
ATGACCACCCAGAAGAGGCTGACGACCCAGCTAAAGGGCGCTCTAAAGTC
CGAGTTCGAGGTGCCGGAGTCCGGCGAGGACATACTCGTGGAGGAGGTGG
AGATACCCCAAAGCGATGTCGAGACAGACGCCGATGCCGAGGCGGACGCC
CTGTTCGTGGAGCTGGTCAAGGATCAGGAGGAGTCCGACACGGAGATAAA
GAGAGAGTTCGTGGACGAGGAGGAGGAGGAGGACGACGACGACGACGACG
AGTTCATCTGCGAGGACGTGGATGTGGGCGACTCCGAGGCCCTGTATGGC
AAGTCCTCCGATGGCGAGGACAGGCCGACGAAGAAGCGCGTCAAGCAGGA
GTGCACTACCTGCGGCAAGGTGTACAACTCCTGGTATCAACTGCAGAAGC
ACATCAGCGAGGAGCACTCCAAGCAGCCCAACCACATCTGCCCCATCTGC
GGGGTGATCCGGCGCGACGAGGAGTACTTGGAGCTGCACATGAATCTGCA
CGAGGGCAAGACGGAAAAGCAATGCCGCTACTGCCCTCAGAGCTTCTCGC
GCCCGGTGAACACCCTGCGCCACATGCGCATGCACTGGGACAAGAAGAAG
TACCAGTGCGAGAAGTGCGGCCTGAGGTTCTCCCAG
BS01134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17958-PA | 1302 | Sry-delta-RA | 1..870 | 17..886 | 4300 | 99.7 | Plus |
CG7938-PA | 1071 | Sry-beta-RA | 749..789 | 831..871 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-delta-RA | 1546 | CG17958-RA | 139..1008 | 17..886 | 4320 | 99.8 | Plus |
Sry-beta-RB | 3300 | CG7938-RB | 746..883 | 734..871 | 270 | 80.6 | Plus |
Sry-beta-RA | 1260 | CG7938-RA | 746..883 | 734..871 | 270 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30043479..30044348 | 17..886 | 4320 | 99.8 | Plus |
3R | 32079331 | 3R | 30040517..30040654 | 734..871 | 270 | 79.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:36:59 has no hits.
BS01134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:49 Download gff for
BS01134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17958-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:03 Download gff for
BS01134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17958-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:50:38 Download gff for
BS01134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 131..1008 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:30:54 Download gff for
BS01134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 131..1008 | 8..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:30:54 Download gff for
BS01134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30043471..30044348 | 8..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:50:38 Download gff for
BS01134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25869193..25870070 | 8..886 | 99 | | Plus |
BS01134.complete Sequence
1336 bp (1336 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634539
> BS01134.complete
GAAGTTATCAGTCGACATGGATACTTGCTTCTTCTGCGGCGCCGTCGATC
TGAGCGACACGGGCTCCTCCAGCTCCATGCGCTACGAGACGCTGTCGGCC
AAGGTGCCGTCGTCGCAGAAAACAGTGTCCCTGGTGCTCACCCACCTGGC
CAACTGCATCCAGACGCAGCTGGACCTGAAGCCCGGCGCCCGGCTGTGCC
CGCGCTGCTTTCAGGAGCTCTCCGACTACGACACGATCATGGTGAACCTG
ATGACCACCCAGAAGAGGCTGACGACCCAGCTAAAGGGCGCTCTAAAGTC
CGAGTTCGAGGTGCCGGAGTCCGGCGAGGACATACTCGTGGAGGAGGTGG
AGATACCCCAAAGCGATGTCGAGACAGACGCCGATGCCGAGGCGGACGCC
CTGTTCGTGGAGCTGGTCAAGGATCAGGAGGAGTCCGACACGGAGATAAA
GAGAGAGTTCGTGGACGAGGAGGAGGAGGAGGACGACGACGACGACGACG
AGTTCATCTGCGAGGACGTGGATGTGGGCGACTCCGAGGCCCTGTATGGC
AAGTCCTCCGATGGCGAGGACAGGCCGACGAAGAAGCGCGTCAAGCAGGA
GTGCACTACCTGCGGCAAGGTGTACAACTCCTGGTATCAACTGCAGAAGC
ACATCAGCGAGGAGCACTCCAAGCAGCCCAACCACATCTGCCCCATCTGC
GGGGTGATCCGGCGCGACGAGGAGTACTTGGAGCTGCACATGAATCTGCA
CGAGGGCAAGACGGAAAAGCAATGCCGCTACTGCCCCAAGAGCTTCTCGC
GCCCGGTGAACACCCTGCGCCACATGCGCATGCACTGGGACAAGAAGAAG
TACCAGTGCGAGAAGTGCGGCCTGAGGTTCTCCCAGGACAACCTACTCTA
CAACCACCGGCTGCGCCACGAGGCTGAGGAGAACCCCATCATATGCAGCA
TCTGCAATGTGTCGTTCAAGTCGCGCAAGACCTTCAACCATCACACGCTC
ATTCACAAGGAGAACCGCCCAAGACACTACTGCTCCGTCTGCCCCAAGTC
CTTCACCGAGCGCTACACCCTCAAGATGCACATGAAGACCCACGAGGGCG
ACGTCGTTTACGGGGTTCGCGAGGAGGCGCCCGCCGACGAGCAGCAGGTG
GTGGAGGAGCTGCATGTGGACGTCGACGAATCGGAGGCGGCCGTCACCGT
CATCATGTCCGACAACGATGAGAACAGCGGCTTCTGTCTCATTTGCAATA
CCAACTTCGAGAACAAGAAGGAGCTCGAACACCACTTGCAATTTGATCAC
GACGTGGTCTTGAAATAACGAAGCTTTCTAGACCAT
BS01134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-delta-RA | 1302 | CG17958-PA | 1..1302 | 17..1318 | 6510 | 100 | Plus |
Sry-beta-RB | 1071 | CG7938-PB | 652..789 | 734..871 | 300 | 81.2 | Plus |
Sry-beta-RA | 1071 | CG7938-PA | 652..789 | 734..871 | 300 | 81.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-delta-RA | 1546 | CG17958-RA | 139..1440 | 17..1318 | 6510 | 100 | Plus |
Sry-beta-RB | 3300 | CG7938-RB | 746..883 | 734..871 | 300 | 81.2 | Plus |
Sry-beta-RA | 1260 | CG7938-RA | 746..883 | 734..871 | 300 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30043479..30044780 | 17..1318 | 6510 | 100 | Plus |
3R | 32079331 | 3R | 30040517..30040654 | 734..871 | 300 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:57:04 has no hits.
BS01134.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:56 Download gff for
BS01134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 1..1302 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:04 Download gff for
BS01134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 126..1438 | 8..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:47 Download gff for
BS01134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 139..1441 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:56 Download gff for
BS01134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 126..1438 | 8..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:26 Download gff for
BS01134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-delta-RA | 139..1441 | 17..1320 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:26 Download gff for
BS01134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30043479..30044781 | 17..1320 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:47 Download gff for
BS01134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25869201..25870503 | 17..1320 | 99 | | Plus |
BS01134.pep Sequence
Translation from 16 to 1317
> BS01134.pep
MDTCFFCGAVDLSDTGSSSSMRYETLSAKVPSSQKTVSLVLTHLANCIQT
QLDLKPGARLCPRCFQELSDYDTIMVNLMTTQKRLTTQLKGALKSEFEVP
ESGEDILVEEVEIPQSDVETDADAEADALFVELVKDQEESDTEIKREFVD
EEEEEDDDDDDEFICEDVDVGDSEALYGKSSDGEDRPTKKRVKQECTTCG
KVYNSWYQLQKHISEEHSKQPNHICPICGVIRRDEEYLELHMNLHEGKTE
KQCRYCPKSFSRPVNTLRHMRMHWDKKKYQCEKCGLRFSQDNLLYNHRLR
HEAEENPIICSICNVSFKSRKTFNHHTLIHKENRPRHYCSVCPKSFTERY
TLKMHMKTHEGDVVYGVREEAPADEQQVVEELHVDVDESEAAVTVIMSDN
DENSGFCLICNTNFENKKELEHHLQFDHDVVLK*
BS01134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-delta-PA | 433 | CG17958-PA | 1..433 | 1..433 | 2326 | 100 | Plus |
Sry-beta-PB | 356 | CG7938-PB | 28..338 | 30..360 | 597 | 35.9 | Plus |
Sry-beta-PA | 356 | CG7938-PA | 28..338 | 30..360 | 597 | 35.9 | Plus |
CG15269-PA | 587 | CG15269-PA | 302..491 | 164..361 | 327 | 36.2 | Plus |
CG7928-PA | 457 | CG7928-PA | 130..420 | 86..360 | 293 | 28.6 | Plus |
CG15269-PA | 587 | CG15269-PA | 293..488 | 218..426 | 202 | 27.4 | Plus |