Clone BS01134 Report

Search the DGRC for BS01134

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptSry-delta-RA
Protein status:BS01134.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01134.3prime Sequence

869 bp (802 high quality bases) assembled on 2005-11-30

> BS01134.3prime
ATGGTCTAGAAAGCTTCGTTATTTCAAGACCACGTCGTGATCAAATTGCA
AGTGGTGTTCGAGCTCCTTCTTGTTCTCGAAGTTGGTATTGCAAATGAGA
CAGAAGCCGCTGTTCTCATCGTTGTCGGACATGATGACGGTGACGGCCGC
CTCCGATTCGTCGACGTCCACATGCAGCTCCTCCACCACCTGCTGCTCGT
CGGCGGGCGCCTCCTCGCGAACCCCGTAAACGACGTCGCCCTCGTGGGTC
TTCATGTGCATCTTGAGGGTGTAGCGCTCGGTGAAGGACTTGGGGCAGAC
GGAGCAGTAGTGTCTTGGGCGGTTCTCCTTGTGAATGAGCGTGTGATGGT
TGAAGGTCTTGCGCGACTTGAACGACACATTGCAGATGCTGCATATGATG
GGGTTCTCCTCAGCCTCGTGGCGCAGCCGGTGGTTGTAGAGTAGGTTGTC
CTGGGAGAACCTCAGGCCGCACTTCTCGCACTGGTACTTCTTCTTGTCCC
AGTGCATGCGCATGTGGCGCAGGGTGTTCACCGGGCGCGAGAAGCTCTTG
GGGCAGTAGCGGCATTGCTTTTCCGTCTTGCCCTCGTGCAGATTCATGTG
CAGCTCCAAGTACTCCTCGTCGCGCCGGATCACCCCGCAGATGGGGCAGA
TGTGGTTGGGCTGCTTGGAGTGCTCCTCGCTGATGTGCTTCTGCAGTTGA
TACCAGGAGTTGTACACCTTGCCGCANGTAGTGCACTCCTGCTTGACGCG
CTTCTTCGTCGGCCTGTCCTCGCCATCGGAGGACTTGCCATACAGGGCCT
CGGAGTCGCCCACATCCACGTCCTCGCAGATGAACTCGTCGTCGTCGTCG
TCGTCCTCCTCCTCCTCCT

BS01134.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17958-PA 1302 Sry-delta-RA 452..1302 869..19 4236 99.8 Minus
CG7938-PA 1071 Sry-beta-RA 749..789 506..466 180 97.5 Minus
CG3918-PA 966 CG3918-RA 631..664 836..869 170 100 Plus
CG17958-PA 1302 Sry-delta-RA 451..482 867..836 135 96.8 Minus
CG3918-PA 966 CG3918-RA 634..665 836..867 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-RA 1546 CG17958-RA 590..1440 869..19 4244 99.9 Minus
Sry-beta-RB 3300 CG7938-RB 746..883 603..466 300 81.2 Minus
Sry-beta-RA 1260 CG7938-RA 746..883 603..466 300 81.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30043930..30044780 869..19 4244 99.9 Minus
3R 32079331 3R 30040517..30040654 603..466 300 81.2 Minus
Blast to na_te.dros performed on 2015-02-11 11:24:03 has no hits.

BS01134.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:48 Download gff for BS01134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17958-PA 452..1302 19..869 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:01 Download gff for BS01134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17958-PA 452..1302 19..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:13:30 Download gff for BS01134.3prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 590..1443 12..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:39 Download gff for BS01134.3prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 590..1443 12..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:39 Download gff for BS01134.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30043930..30044783 12..869 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:13:30 Download gff for BS01134.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25869652..25870505 12..869 99   Minus

BS01134.5prime Sequence

886 bp (761 high quality bases) assembled on 2005-11-30

> BS01134.5prime
GAAGTTATCAGTCGACATGGATACTTGCTTCTTCTGCGGCGCCGTCGATC
TGAGCGACACGGGCTCCTCCAGCTCCATGCGCTACGAGACGCTGTCGGCC
AAGGTGCCGTCGTCGCAGAAAACAGTGTCCCTGGTGCTCACCCACCTGGC
CAACTGCATCCAGACGCAGCTGGACCTGAAGCCCGGCGCCCGGCTGTGCC
CGCGCTGCTTTCAGGAGCTCTCCGACTACGACACGATCATGGTGAACCTG
ATGACCACCCAGAAGAGGCTGACGACCCAGCTAAAGGGCGCTCTAAAGTC
CGAGTTCGAGGTGCCGGAGTCCGGCGAGGACATACTCGTGGAGGAGGTGG
AGATACCCCAAAGCGATGTCGAGACAGACGCCGATGCCGAGGCGGACGCC
CTGTTCGTGGAGCTGGTCAAGGATCAGGAGGAGTCCGACACGGAGATAAA
GAGAGAGTTCGTGGACGAGGAGGAGGAGGAGGACGACGACGACGACGACG
AGTTCATCTGCGAGGACGTGGATGTGGGCGACTCCGAGGCCCTGTATGGC
AAGTCCTCCGATGGCGAGGACAGGCCGACGAAGAAGCGCGTCAAGCAGGA
GTGCACTACCTGCGGCAAGGTGTACAACTCCTGGTATCAACTGCAGAAGC
ACATCAGCGAGGAGCACTCCAAGCAGCCCAACCACATCTGCCCCATCTGC
GGGGTGATCCGGCGCGACGAGGAGTACTTGGAGCTGCACATGAATCTGCA
CGAGGGCAAGACGGAAAAGCAATGCCGCTACTGCCCTCAGAGCTTCTCGC
GCCCGGTGAACACCCTGCGCCACATGCGCATGCACTGGGACAAGAAGAAG
TACCAGTGCGAGAAGTGCGGCCTGAGGTTCTCCCAG

BS01134.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17958-PA 1302 Sry-delta-RA 1..870 17..886 4300 99.7 Plus
CG7938-PA 1071 Sry-beta-RA 749..789 831..871 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-RA 1546 CG17958-RA 139..1008 17..886 4320 99.8 Plus
Sry-beta-RB 3300 CG7938-RB 746..883 734..871 270 80.6 Plus
Sry-beta-RA 1260 CG7938-RA 746..883 734..871 270 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30043479..30044348 17..886 4320 99.8 Plus
3R 32079331 3R 30040517..30040654 734..871 270 79.7 Plus
Blast to na_te.dros performed on 2015-02-13 02:36:59 has no hits.

BS01134.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:49 Download gff for BS01134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17958-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:03 Download gff for BS01134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17958-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:50:38 Download gff for BS01134.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 131..1008 8..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:30:54 Download gff for BS01134.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 131..1008 8..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:30:54 Download gff for BS01134.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30043471..30044348 8..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:50:38 Download gff for BS01134.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25869193..25870070 8..886 99   Plus

BS01134.complete Sequence

1336 bp (1336 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634539

> BS01134.complete
GAAGTTATCAGTCGACATGGATACTTGCTTCTTCTGCGGCGCCGTCGATC
TGAGCGACACGGGCTCCTCCAGCTCCATGCGCTACGAGACGCTGTCGGCC
AAGGTGCCGTCGTCGCAGAAAACAGTGTCCCTGGTGCTCACCCACCTGGC
CAACTGCATCCAGACGCAGCTGGACCTGAAGCCCGGCGCCCGGCTGTGCC
CGCGCTGCTTTCAGGAGCTCTCCGACTACGACACGATCATGGTGAACCTG
ATGACCACCCAGAAGAGGCTGACGACCCAGCTAAAGGGCGCTCTAAAGTC
CGAGTTCGAGGTGCCGGAGTCCGGCGAGGACATACTCGTGGAGGAGGTGG
AGATACCCCAAAGCGATGTCGAGACAGACGCCGATGCCGAGGCGGACGCC
CTGTTCGTGGAGCTGGTCAAGGATCAGGAGGAGTCCGACACGGAGATAAA
GAGAGAGTTCGTGGACGAGGAGGAGGAGGAGGACGACGACGACGACGACG
AGTTCATCTGCGAGGACGTGGATGTGGGCGACTCCGAGGCCCTGTATGGC
AAGTCCTCCGATGGCGAGGACAGGCCGACGAAGAAGCGCGTCAAGCAGGA
GTGCACTACCTGCGGCAAGGTGTACAACTCCTGGTATCAACTGCAGAAGC
ACATCAGCGAGGAGCACTCCAAGCAGCCCAACCACATCTGCCCCATCTGC
GGGGTGATCCGGCGCGACGAGGAGTACTTGGAGCTGCACATGAATCTGCA
CGAGGGCAAGACGGAAAAGCAATGCCGCTACTGCCCCAAGAGCTTCTCGC
GCCCGGTGAACACCCTGCGCCACATGCGCATGCACTGGGACAAGAAGAAG
TACCAGTGCGAGAAGTGCGGCCTGAGGTTCTCCCAGGACAACCTACTCTA
CAACCACCGGCTGCGCCACGAGGCTGAGGAGAACCCCATCATATGCAGCA
TCTGCAATGTGTCGTTCAAGTCGCGCAAGACCTTCAACCATCACACGCTC
ATTCACAAGGAGAACCGCCCAAGACACTACTGCTCCGTCTGCCCCAAGTC
CTTCACCGAGCGCTACACCCTCAAGATGCACATGAAGACCCACGAGGGCG
ACGTCGTTTACGGGGTTCGCGAGGAGGCGCCCGCCGACGAGCAGCAGGTG
GTGGAGGAGCTGCATGTGGACGTCGACGAATCGGAGGCGGCCGTCACCGT
CATCATGTCCGACAACGATGAGAACAGCGGCTTCTGTCTCATTTGCAATA
CCAACTTCGAGAACAAGAAGGAGCTCGAACACCACTTGCAATTTGATCAC
GACGTGGTCTTGAAATAACGAAGCTTTCTAGACCAT

BS01134.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-RA 1302 CG17958-PA 1..1302 17..1318 6510 100 Plus
Sry-beta-RB 1071 CG7938-PB 652..789 734..871 300 81.2 Plus
Sry-beta-RA 1071 CG7938-PA 652..789 734..871 300 81.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-RA 1546 CG17958-RA 139..1440 17..1318 6510 100 Plus
Sry-beta-RB 3300 CG7938-RB 746..883 734..871 300 81.2 Plus
Sry-beta-RA 1260 CG7938-RA 746..883 734..871 300 81.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30043479..30044780 17..1318 6510 100 Plus
3R 32079331 3R 30040517..30040654 734..871 300 81.2 Plus
Blast to na_te.dros performed on 2014-11-27 19:57:04 has no hits.

BS01134.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:56 Download gff for BS01134.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 1..1302 17..1318 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:04 Download gff for BS01134.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 126..1438 8..1325 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:47 Download gff for BS01134.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 139..1441 17..1320 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:56 Download gff for BS01134.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 126..1438 8..1325 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:26 Download gff for BS01134.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 139..1441 17..1320 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:26 Download gff for BS01134.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30043479..30044781 17..1320 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:47 Download gff for BS01134.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25869201..25870503 17..1320 99   Plus

BS01134.pep Sequence

Translation from 16 to 1317

> BS01134.pep
MDTCFFCGAVDLSDTGSSSSMRYETLSAKVPSSQKTVSLVLTHLANCIQT
QLDLKPGARLCPRCFQELSDYDTIMVNLMTTQKRLTTQLKGALKSEFEVP
ESGEDILVEEVEIPQSDVETDADAEADALFVELVKDQEESDTEIKREFVD
EEEEEDDDDDDEFICEDVDVGDSEALYGKSSDGEDRPTKKRVKQECTTCG
KVYNSWYQLQKHISEEHSKQPNHICPICGVIRRDEEYLELHMNLHEGKTE
KQCRYCPKSFSRPVNTLRHMRMHWDKKKYQCEKCGLRFSQDNLLYNHRLR
HEAEENPIICSICNVSFKSRKTFNHHTLIHKENRPRHYCSVCPKSFTERY
TLKMHMKTHEGDVVYGVREEAPADEQQVVEELHVDVDESEAAVTVIMSDN
DENSGFCLICNTNFENKKELEHHLQFDHDVVLK*

BS01134.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-PA 433 CG17958-PA 1..433 1..433 2326 100 Plus
Sry-beta-PB 356 CG7938-PB 28..338 30..360 597 35.9 Plus
Sry-beta-PA 356 CG7938-PA 28..338 30..360 597 35.9 Plus
CG15269-PA 587 CG15269-PA 302..491 164..361 327 36.2 Plus
CG7928-PA 457 CG7928-PA 130..420 86..360 293 28.6 Plus
CG15269-PA 587 CG15269-PA 293..488 218..426 202 27.4 Plus