Clone Sequence Records
BS01137.3prime Sequence
830 bp (771 high quality bases) assembled on 2005-11-30
> BS01137.3prime
ATGGTCTAGAAAGCTTCGTTAGGTTTTCTTCCACGAGTAATACATTTCCA
TAGGTTTGTTTACCTTCCAGAATTTGTCGTTGACCTGGTGCAACGTCTGG
TTGCCATTCAGGATAACCAACTGCTGTGGCTGTGGAGCGACGTAGATGCA
AAAGTTGAGCACGCGACAAGCCTCTGGCAAATCGGCGCCCAGGTCGAGCG
TGAGCCGCATGGCCAGATACTTGCTGAGATGATCGACGGTGGCATTTGCC
GTGGTCTTGATGTAGCGCACACAGTTCTCCTTGAGTGCCCGTATGAGCTG
GTTGTCCGCCGACATCTCCGTGGGATGGGGCTTGAAGACGAGCTCGATTT
CATCGTTGATGCCCAGCTCGCCATTGCCCTCGCCCTCTGTGTCGATGTTG
GAGTCACCCTCGGTGCGGCAGTCCATCTGTGAATCCGACTCGGACTCCTC
GGACCGCTCCGAAGTCAGCACCGACATGGCGCGCTTCGGCTTGGAGCTGC
TCGAGTTGGAGGGCACTGGTGACGGAGTGCTCCGCACCGAGGGGGGATTG
GAAGCGTCGTCCACCTGCATCCGAGTGGCGGATGTGCTGGCGCCCGAGTT
TGCCGACGACGAGGGCGCAGCATTCGAGGCGCTCGTTATGGCCGATGCTG
CCGATGTGCCCGAATGACCCGGATCCCGGTTCTCGCGATCAATGCTGTTG
GTATTGCTGTTGCTATCATTGGAGGCTGTGTCGTGGACGTGCATTTGGTT
GGAGGCATTGCGACCCACAGCAGTGGGTGCACCAGGTGCAGGCGGAGCTG
CGACATTGGCAGCACCATTTCCATTACCAC
BS01137.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5595-PA | 1308 | Sce-RA | 497..1308 | 830..19 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-RA | 1542 | CG5595-RA | 611..1422 | 830..19 | 4060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27680651..27681419 | 62..830 | 3845 | 100 | Plus |
| 3R | 32079331 | 3R | 27680551..27680597 | 19..65 | 235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2868..2982 | 791..679 | 119 | 60.7 | Minus |
| F-element | 4708 | F-element F 4708bp | 4291..4331 | 721..679 | 111 | 76.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2451 | 747..581 | 109 | 54.5 | Minus |
BS01137.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:55 Download gff for
BS01137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-PA | 497..1308 | 19..830 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:10 Download gff for
BS01137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5595-PA | 497..1308 | 19..830 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:33:35 Download gff for
BS01137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 611..1422 | 19..830 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:24:31 Download gff for
BS01137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 611..1422 | 19..830 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:24:31 Download gff for
BS01137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27680653..27681419 | 64..830 | 100 | | Plus |
| 3R | 27680551..27680595 | 19..63 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:33:35 Download gff for
BS01137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23506273..23506317 | 19..63 | 100 | <- | Plus |
| arm_3R | 23506375..23507141 | 64..830 | 100 | | Plus |
BS01137.5prime Sequence
849 bp (776 high quality bases) assembled on 2005-11-30
> BS01137.5prime
GAAGTTATCAGTCGACATGACGTCGCTGGACCCGGCGCCAAACAAAACGT
GGGAGCTGTCGCTGTACGAGCTGCAGCGCAAGCCGCAGGAGGTGATCACG
GACAGCACGGAAATCGCGGTGTCCCCGCGGAGCCTCCACAGCGAACTGAT
GTGTCCCATCTGCCTGGACATGCTGAAGAAGACGATGACGACGAAGGAGT
GCCTGCACCGCTTCTGCTCCGACTGCATTGTGACCGCCCTGCGTTCGGGC
AATAAGGAGTGCCCCACGTGCCGCAAGAAGCTCGTCTCCAAGCGCTCCCT
GCGCGCCGATCCCAACTTCGACCTGCTCATCTCGAAGATCTACCCCAGTC
GCGAGGAATACGAGGCCATCCAGGAGAAGGTGATGGCTAAGTTCAACCAG
ACGCAGTCGCAGCAGGCGCTGGTCAACTCCATCAACGAGGGCATCAAGCT
GCAGTCCCAGAACCGGCCACAAAGATTCCGCACCAAGGGCGGCGGCGGTG
GTGGTGGTGGAGGTGGTAATGGAAATGGTGCTGCCAATGTCGCAGCTCCG
CCTGCACCTGGTGCACCCACTGCTGTGGGTCGCAATGCCTCCAACCAAAT
GCACGTCCACGACACAGCCTCCAATGATAGCAACAGCAATACCAACAGCA
TTGATCGCGAGAACCGGGATCCGGGTCATTCGGGCACATCGGCAGCATCG
GCCATAACGAGCGCCTCGAATGCTGCGCCCTCGTCGTCGGCAAACTCGGG
CGCCAGCACATCCGCCACTCGGATGCAGGTGGACGACGCTTCCCATCCCC
CCTCGGTGCGGAGCACTCCGTCAACAGTGCCCTCCAACTCGAGCAGCTC
BS01137.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5595-PA | 1308 | Sce-RA | 1..833 | 17..849 | 4115 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-RA | 1542 | CG5595-RA | 115..947 | 17..849 | 4135 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27681083..27681915 | 849..17 | 4135 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-13 02:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2868..2982 | 552..664 | 119 | 60.7 | Plus |
| F-element | 4708 | F-element F 4708bp | 4291..4331 | 622..664 | 111 | 76.7 | Plus |
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 557..596 | 155..194 | 110 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2451 | 596..762 | 109 | 54.5 | Plus |
BS01137.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:01:56 Download gff for
BS01137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-PA | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:12 Download gff for
BS01137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5595-PA | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:50:32 Download gff for
BS01137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 109..947 | 11..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:29:39 Download gff for
BS01137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 109..947 | 11..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:29:39 Download gff for
BS01137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27681083..27681921 | 11..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:50:32 Download gff for
BS01137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23506805..23507643 | 11..849 | 99 | | Minus |
BS01137.complete Sequence
1342 bp (1342 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634540
> BS01137.complete
GAAGTTATCAGTCGACATGACGTCGCTGGACCCGGCGCCAAACAAAACGT
GGGAGCTGTCGCTGTACGAGCTGCAGCGCAAGCCGCAGGAGGTGATCACG
GACAGCACGGAAATCGCGGTGTCCCCGCGGAGCCTCCACAGCGAACTGAT
GTGTCCCATCTGCCTGGACATGCTGAAGAAGACGATGACGACGAAGGAGT
GCCTGCACCGCTTCTGCTCCGACTGCATTGTGACCGCCCTGCGTTCGGGC
AATAAGGAGTGCCCCACGTGCCGCAAGAAGCTCGTCTCCAAGCGCTCCCT
GCGCGCCGATCCCAACTTCGACCTGCTCATCTCGAAGATCTACCCCAGTC
GCGAGGAATACGAGGCCATCCAGGAGAAGGTGATGGCTAAGTTCAACCAG
ACGCAGTCGCAGCAGGCGCTGGTCAACTCCATCAACGAGGGCATCAAGCT
GCAGTCCCAGAACCGGCCACAAAGATTCCGCACCAAGGGCGGCGGCGGTG
GTGGTGGTGGAGGTGGTAATGGAAATGGTGCTGCCAATGTCGCAGCTCCG
CCTGCACCTGGTGCACCCACTGCTGTGGGTCGCAATGCCTCCAACCAAAT
GCACGTCCACGACACAGCCTCCAATGATAGCAACAGCAATACCAACAGCA
TTGATCGCGAGAACCGGGATCCGGGTCATTCGGGCACATCGGCAGCATCG
GCCATAACGAGCGCCTCGAATGCTGCGCCCTCGTCGTCGGCAAACTCGGG
CGCCAGCACATCCGCCACTCGGATGCAGGTGGACGACGCTTCCAATCCCC
CCTCGGTGCGGAGCACTCCGTCACCAGTGCCCTCCAACTCGAGCAGCTCC
AAGCCGAAGCGCGCCATGTCGGTGCTGACTTCGGAGCGGTCCGAGGAGTC
CGAGTCGGATTCACAGATGGACTGCCGCACCGAGGGTGACTCCAACATCG
ACACAGAGGGCGAGGGCAATGGCGAGCTGGGCATCAACGATGAAATCGAG
CTCGTCTTCAAGCCCCATCCCACGGAGATGTCGGCGGACAACCAGCTCAT
ACGGGCACTCAAGGAGAACTGTGTGCGCTACATCAAGACCACGGCAAATG
CCACCGTCGATCATCTCAGCAAGTATCTGGCCATGCGGCTCACGCTCGAC
CTGGGCGCCGATTTGCCAGAGGCTTGTCGCGTGCTCAACTTTTGCATCTA
CGTCGCTCCACAGCCACAGCAGTTGGTTATCCTGAATGGCAACCAGACGT
TGCACCAGGTCAACGACAAATTCTGGAAGGTAAACAAACCTATGGAAATG
TATTACTCGTGGAAGAAAACCTAACGAAGCTTTCTAGACCAT
BS01137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-RA | 1308 | CG5595-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-RA | 1542 | CG5595-RA | 115..1422 | 17..1324 | 6540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27680651..27681915 | 1281..17 | 6325 | 100 | Minus |
| 3R | 32079331 | 3R | 27680551..27680597 | 1324..1278 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| F-element | 4708 | F-element F 4708bp | 4291..4331 | 622..664 | 111 | 76.7 | Plus |
BS01137.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:57 Download gff for
BS01137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 1..1308 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:21:05 Download gff for
BS01137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 104..1417 | 11..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:25 Download gff for
BS01137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 115..1423 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:57 Download gff for
BS01137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 104..1417 | 11..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:06 Download gff for
BS01137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 115..1423 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:06 Download gff for
BS01137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27680550..27680595 | 1280..1326 | 97 | <- | Minus |
| 3R | 27680653..27681915 | 17..1279 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:25 Download gff for
BS01137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23506272..23506317 | 1280..1326 | 97 | <- | Minus |
| arm_3R | 23506375..23507637 | 17..1279 | 100 | | Minus |
BS01137.pep Sequence
Translation from 16 to 1323
> BS01137.pep
MTSLDPAPNKTWELSLYELQRKPQEVITDSTEIAVSPRSLHSELMCPICL
DMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADPN
FDLLISKIYPSREEYEAIQEKVMAKFNQTQSQQALVNSINEGIKLQSQNR
PQRFRTKGGGGGGGGGGNGNGAANVAAPPAPGAPTAVGRNASNQMHVHDT
ASNDSNSNTNSIDRENRDPGHSGTSAASAITSASNAAPSSSANSGASTSA
TRMQVDDASNPPSVRSTPSPVPSNSSSSKPKRAMSVLTSERSEESESDSQ
MDCRTEGDSNIDTEGEGNGELGINDEIELVFKPHPTEMSADNQLIRALKE
NCVRYIKTTANATVDHLSKYLAMRLTLDLGADLPEACRVLNFCIYVAPQP
QQLVILNGNQTLHQVNDKFWKVNKPMEMYYSWKKT*
BS01137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-PA | 435 | CG5595-PA | 1..435 | 1..435 | 2263 | 100 | Plus |
