Clone BS01140 Report

Search the DGRC for BS01140

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptSsl1-RA
Protein status:BS01140.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01140.3prime Sequence

816 bp (815 high quality bases) assembled on 2005-11-30

> BS01140.3prime
ATGGTCTAGAAAGCTTCGTTACATCCCACACTGGCCGCGCTGCTTTGAGG
GCCCTGGGTGTGCATCAACCTGGTCAGACTTGGAACTTTGCTGGTAAACC
AGACCGTCTACGCCGGGAATGGTGTTGCATCCCACGCAGGCGTGCAATGT
GTCGTGAATGAAGATGTCGCAGTCAACGCAGAAGAACTGCTTGCAGAAAC
CGCATCTGAAGACGACTTTATCGGCGACCTTGTCAACGCCTTGCCCAAGA
GCTTTGGCGCAGCCGTAACATTCCCTGACATCGCTGGTGAGGTCGGATGA
CGAAGCAGGCATCGCCTCAAACGGCAGTTCCTCAAAATTTGGCACCGGGA
AAAGGTGGTGGTAGGAACGCGCCAAGTGCGGCGCGGAGACCAGGGTGAGG
CCGCAAGACTGGCACTCCACGGGCAGCTCGCAGTACTTGCTGTTGCATTG
CGGGCAGTGGTGGCCAGTAGTGGTCAGTTCACTGGGCTCCTCCAAGTTCT
CTATGTGGCACATGCACATGGACAATGGCGCGTCCTTGCCCTCAACTTCA
TTCTTTGTGTGCGGGAAGCCCATGCGAATAAGCGAGTTGTGCTGAGTCTT
AGCGGCGGGCGGTGGATCTACCTGAGACATGAGTTGATCCCGAAAATGTG
CATCATCCAAAACAGCCCCGAAGGTGCCCATTGTTTGCTGAGTGAGGTAG
CGGGCCACGTGAATCTCAGCGGACAGGGAAATAACCGAGCAGCGTATGCC
CTCCTTTTTTTACTCGTCGATGGTGAGGTTAATATCGACAGGATCACATG
TGGTGAGCGAGCCCAT

BS01140.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11115-PA 1317 Ssl1-RA 520..1317 816..19 3965 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-RB 1613 CG11115-RB 640..1438 816..18 3980 99.9 Minus
Ssl1-RA 1713 CG11115-RA 740..1538 816..18 3980 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22879990..22880788 816..18 3980 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 23:20:57 has no hits.

BS01140.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:01 Download gff for BS01140.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-PA 520..1317 19..816 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:19 Download gff for BS01140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11115-PA 520..1317 19..816 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:40:35 Download gff for BS01140.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 740..1548 7..816 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:40:01 Download gff for BS01140.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 740..1548 7..816 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:40:01 Download gff for BS01140.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22879990..22880798 7..816 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:40:35 Download gff for BS01140.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22873090..22873898 7..816 99   Minus

BS01140.5prime Sequence

792 bp (726 high quality bases) assembled on 2005-11-30

> BS01140.5prime
GAAGTTATCAGTCGACATGGCCGACGATGAGCAAGAGGACCAGAAGGAGT
ACCGCTGGGAAACGGGCTATGAAAAGACATGGGAGGCCATCAAGGACGAC
GAGGATGGGATGCTGGATGGAGCCATTGCAGAGATCATTCAGAAGGCCAA
ACGCCAGAGGCAGGCTCAAAAGTCCAAGCAGAACCGCCTGGGCATGATGC
GCCACATGTTCGTTGTGCTCGATTGCTCTGAGTCCATGAGCGTGCCTGAT
TTGAAACCCACACGACTGCGGTGCACCGTCAAGCTGCTGGAGCTGTTTAT
CGAGGAGTTCTTCGATCAGAACCCCATCAGCCAATTAGGACTCATAGCGC
TAAAAGCTAAGCGAGCGGAGAAGGTGACCGAACTTACCGGCACTTCGCGC
GTGCACCTCAAAGCGCTAGAGAGCTTGGCTAACGTGTCCTTGACCAGCGA
GCCTTCGCTGCAAAATGGCCTAGATCTGGCCCTAAAATCGCTTAAGGTGG
TGCCGTCGCACGCCTCCCGAGAGATCGTCATTATCATGGGCTCGCTCACC
ACATGTGATCCTGTCGATATTAACCTCACCATCGACGAGTTAAAAAAGGA
GGGCATACGCTGCTCGGTTATTTCCCTGTCCGCTGAGATTCACGTGGCCC
GCTACCTCACTCAGCAAACAATGGGCACCTTCGGGGCTGTTTTGGATGAT
GCACATTTTCGGGATCAACTCATGTCTCAGGTAGATCCACCGCCCGCCGC
TAAGACTCAGCACAACTCGCTTATTCGCATGGGCTTTCCGCA

BS01140.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11115-PA 1317 Ssl1-RA 1..776 17..792 3855 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-RB 1613 CG11115-RB 121..896 17..792 3865 99.9 Plus
Ssl1-RA 1713 CG11115-RA 221..996 17..792 3865 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22879876..22880246 422..792 1840 99.7 Plus
3L 28110227 3L 22879483..22879825 81..423 1715 100 Plus
3L 28110227 3L 22879366..22879431 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:06:41 has no hits.

BS01140.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:02 Download gff for BS01140.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-PA 1..775 17..791 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:20 Download gff for BS01140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11115-PA 1..775 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:33:39 Download gff for BS01140.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 218..995 10..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:54:42 Download gff for BS01140.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 218..995 10..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:54:42 Download gff for BS01140.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22879363..22879430 10..81 94 -> Plus
3L 22879484..22879825 82..423 100 -> Plus
3L 22879878..22880245 424..791 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:33:39 Download gff for BS01140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22872463..22872530 10..81 94 -> Plus
arm_3L 22872584..22872925 82..423 100 -> Plus
arm_3L 22872978..22873345 424..791 99   Plus

BS01140.complete Sequence

1351 bp (1351 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634541

> BS01140.complete
GAAGTTATCAGTCGACATGGCCGACGATGAGCAAGAGGACCAGAAGGAGT
ACCGCTGGGAAACGGGCTATGAAAAGACATGGGAGGCCATCAAGGACGAC
GAGGATGGGATGCTGGATGGAGCCATTGCAGAGATCATTCAGAAGGCCAA
ACGCCAGAGGCAGGCTCAAAAGTCCAAGCAGAACCGCCTGGGCATGATGC
GCCACATGTTCGTTGTGCTCGATTGCTCTGAGTCCATGAGCGTGCCTGAT
TTGAAACCCACACGACTGCGGTGCACCGTCAAGCTGCTGGAGCTGTTTAT
CGAGGAGTTCTTCGATCAGAACCCCATCAGCCAATTAGGACTCATAGCGC
TAAAAGCTAAGCGAGCGGAGAAGGTGACCGAACTTACCGGCACTTCGCGC
GTGCACCTCAAAGCGCTAGAGAGCTTGGCTAACGTGTCCTTGACCAGCGA
GCCTTCGCTGCAAAATGGCCTAGATCTGGCCCTAAAATCGCTTAAGGTGG
TGCCGTCGCACGCCTCCCGAGAGATCGTCATTATCATGGGCTCGCTCACC
ACATGTGATCCTGTCGATATTAACCTCACCATCGACGAGTTAAAAAAGGA
GGGCATACGCTGCTCGGTTATTTCCCTGTCCGCTGAGATTCACGTGGCCC
GCTACCTCACTCAGCAAACAATGGGCACCTTCGGGGCTGTTTTGGATGAT
GCACATTTTCGGGATCAACTCATGTCTCAGGTAGATCCACCGCCCGCCGC
TAAGACTCAGCACAACTCGCTTATTCGCATGGGCTTCCCGCACACAAAGA
ATGAAGTTGAGGGCAAGGACGCGCCATTGTCCATGTGCATGTGCCACATA
GAGAACTTGGAGGAGCCCAGTGAACTGACCACTACTGGCCACCACTGCCC
GCAATGCAACAGCAAGTACTGCGAGCTGCCCGTGGAGTGCCAGTCTTGCG
GCCTCACCCTGGTCTCCGCGCCGCACTTGGCGCGTTCCTACCACCACCTT
TTCCCGGTGCCAAATTTTGAGGAACTGCCGTTTGAGGCGATGCCTGCTTC
GTCATCCGACCTCACCAGCGATGTCAGGGAATGTTACGGCTGCGCCAAAG
CTCTTGGGCAAGGCGTTGACAAGGTCGCCGATAAAGTCGTCTTCAGATGC
GGTTTCTGCAAGCAGTTCTTCTGCGTTGACTGCGACATCTTCATTCACGA
CACATTGCACGCCTGCGTGGGATGCAACACCATTCCCGGCGTAGACGGTC
TGGTTTACCAGCAAAGTTCCAAGTCTGACCAGGTTGATGCACACCCAGGG
CCCTCAAAGCAGCGCGGCCAGTGTGGGATGTAACGAAGCTTTCTAGACCA
T

BS01140.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-RB 1317 CG11115-PB 1..1317 17..1333 6585 100 Plus
Ssl1-RA 1317 CG11115-PA 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-RB 1613 CG11115-RB 121..1438 17..1334 6590 100 Plus
Ssl1-RA 1713 CG11115-RA 221..1538 17..1334 6590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22879876..22880788 422..1334 4565 100 Plus
3L 28110227 3L 22879483..22879825 81..423 1715 100 Plus
3L 28110227 3L 22879366..22879431 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:39:04 has no hits.

BS01140.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:46 Download gff for BS01140.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 1..1317 17..1333 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:51 Download gff for BS01140.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 218..1548 10..1345 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:48 Download gff for BS01140.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 221..1538 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:46 Download gff for BS01140.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 218..1548 10..1345 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:34 Download gff for BS01140.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 221..1538 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:34 Download gff for BS01140.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22879366..22879430 17..81 100 -> Plus
3L 22879484..22879825 82..423 100 -> Plus
3L 22879878..22880788 424..1335 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:48 Download gff for BS01140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22872466..22872530 17..81 100 -> Plus
arm_3L 22872584..22872925 82..423 100 -> Plus
arm_3L 22872978..22873888 424..1335 99   Plus

BS01140.pep Sequence

Translation from 16 to 1332

> BS01140.pep
MADDEQEDQKEYRWETGYEKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQA
QKSKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFD
QNPISQLGLIALKAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQN
GLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINLTIDELKKEGIRCS
VISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPAAKTQHN
SLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK
YCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLT
SDVRECYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHAC
VGCNTIPGVDGLVYQQSSKSDQVDAHPGPSKQRGQCGM*

BS01140.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-PB 438 CG11115-PB 1..438 1..438 2315 100 Plus
Ssl1-PA 438 CG11115-PA 1..438 1..438 2315 100 Plus