Clone Sequence Records
BS01140.3prime Sequence
816 bp (815 high quality bases) assembled on 2005-11-30
> BS01140.3prime
ATGGTCTAGAAAGCTTCGTTACATCCCACACTGGCCGCGCTGCTTTGAGG
GCCCTGGGTGTGCATCAACCTGGTCAGACTTGGAACTTTGCTGGTAAACC
AGACCGTCTACGCCGGGAATGGTGTTGCATCCCACGCAGGCGTGCAATGT
GTCGTGAATGAAGATGTCGCAGTCAACGCAGAAGAACTGCTTGCAGAAAC
CGCATCTGAAGACGACTTTATCGGCGACCTTGTCAACGCCTTGCCCAAGA
GCTTTGGCGCAGCCGTAACATTCCCTGACATCGCTGGTGAGGTCGGATGA
CGAAGCAGGCATCGCCTCAAACGGCAGTTCCTCAAAATTTGGCACCGGGA
AAAGGTGGTGGTAGGAACGCGCCAAGTGCGGCGCGGAGACCAGGGTGAGG
CCGCAAGACTGGCACTCCACGGGCAGCTCGCAGTACTTGCTGTTGCATTG
CGGGCAGTGGTGGCCAGTAGTGGTCAGTTCACTGGGCTCCTCCAAGTTCT
CTATGTGGCACATGCACATGGACAATGGCGCGTCCTTGCCCTCAACTTCA
TTCTTTGTGTGCGGGAAGCCCATGCGAATAAGCGAGTTGTGCTGAGTCTT
AGCGGCGGGCGGTGGATCTACCTGAGACATGAGTTGATCCCGAAAATGTG
CATCATCCAAAACAGCCCCGAAGGTGCCCATTGTTTGCTGAGTGAGGTAG
CGGGCCACGTGAATCTCAGCGGACAGGGAAATAACCGAGCAGCGTATGCC
CTCCTTTTTTTACTCGTCGATGGTGAGGTTAATATCGACAGGATCACATG
TGGTGAGCGAGCCCAT
BS01140.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11115-PA | 1317 | Ssl1-RA | 520..1317 | 816..19 | 3965 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssl1-RB | 1613 | CG11115-RB | 640..1438 | 816..18 | 3980 | 99.9 | Minus |
Ssl1-RA | 1713 | CG11115-RA | 740..1538 | 816..18 | 3980 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22879990..22880788 | 816..18 | 3980 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:20:57 has no hits.
BS01140.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:01 Download gff for
BS01140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-PA | 520..1317 | 19..816 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:19 Download gff for
BS01140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11115-PA | 520..1317 | 19..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:40:35 Download gff for
BS01140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 740..1548 | 7..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:40:01 Download gff for
BS01140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 740..1548 | 7..816 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:40:01 Download gff for
BS01140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22879990..22880798 | 7..816 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:40:35 Download gff for
BS01140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22873090..22873898 | 7..816 | 99 | | Minus |
BS01140.5prime Sequence
792 bp (726 high quality bases) assembled on 2005-11-30
> BS01140.5prime
GAAGTTATCAGTCGACATGGCCGACGATGAGCAAGAGGACCAGAAGGAGT
ACCGCTGGGAAACGGGCTATGAAAAGACATGGGAGGCCATCAAGGACGAC
GAGGATGGGATGCTGGATGGAGCCATTGCAGAGATCATTCAGAAGGCCAA
ACGCCAGAGGCAGGCTCAAAAGTCCAAGCAGAACCGCCTGGGCATGATGC
GCCACATGTTCGTTGTGCTCGATTGCTCTGAGTCCATGAGCGTGCCTGAT
TTGAAACCCACACGACTGCGGTGCACCGTCAAGCTGCTGGAGCTGTTTAT
CGAGGAGTTCTTCGATCAGAACCCCATCAGCCAATTAGGACTCATAGCGC
TAAAAGCTAAGCGAGCGGAGAAGGTGACCGAACTTACCGGCACTTCGCGC
GTGCACCTCAAAGCGCTAGAGAGCTTGGCTAACGTGTCCTTGACCAGCGA
GCCTTCGCTGCAAAATGGCCTAGATCTGGCCCTAAAATCGCTTAAGGTGG
TGCCGTCGCACGCCTCCCGAGAGATCGTCATTATCATGGGCTCGCTCACC
ACATGTGATCCTGTCGATATTAACCTCACCATCGACGAGTTAAAAAAGGA
GGGCATACGCTGCTCGGTTATTTCCCTGTCCGCTGAGATTCACGTGGCCC
GCTACCTCACTCAGCAAACAATGGGCACCTTCGGGGCTGTTTTGGATGAT
GCACATTTTCGGGATCAACTCATGTCTCAGGTAGATCCACCGCCCGCCGC
TAAGACTCAGCACAACTCGCTTATTCGCATGGGCTTTCCGCA
BS01140.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11115-PA | 1317 | Ssl1-RA | 1..776 | 17..792 | 3855 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssl1-RB | 1613 | CG11115-RB | 121..896 | 17..792 | 3865 | 99.9 | Plus |
Ssl1-RA | 1713 | CG11115-RA | 221..996 | 17..792 | 3865 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22879876..22880246 | 422..792 | 1840 | 99.7 | Plus |
3L | 28110227 | 3L | 22879483..22879825 | 81..423 | 1715 | 100 | Plus |
3L | 28110227 | 3L | 22879366..22879431 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:06:41 has no hits.
BS01140.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:02 Download gff for
BS01140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-PA | 1..775 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:20 Download gff for
BS01140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11115-PA | 1..775 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:33:39 Download gff for
BS01140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 218..995 | 10..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:54:42 Download gff for
BS01140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 218..995 | 10..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:54:42 Download gff for
BS01140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22879363..22879430 | 10..81 | 94 | -> | Plus |
3L | 22879484..22879825 | 82..423 | 100 | -> | Plus |
3L | 22879878..22880245 | 424..791 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:33:39 Download gff for
BS01140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22872463..22872530 | 10..81 | 94 | -> | Plus |
arm_3L | 22872584..22872925 | 82..423 | 100 | -> | Plus |
arm_3L | 22872978..22873345 | 424..791 | 99 | | Plus |
BS01140.complete Sequence
1351 bp (1351 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634541
> BS01140.complete
GAAGTTATCAGTCGACATGGCCGACGATGAGCAAGAGGACCAGAAGGAGT
ACCGCTGGGAAACGGGCTATGAAAAGACATGGGAGGCCATCAAGGACGAC
GAGGATGGGATGCTGGATGGAGCCATTGCAGAGATCATTCAGAAGGCCAA
ACGCCAGAGGCAGGCTCAAAAGTCCAAGCAGAACCGCCTGGGCATGATGC
GCCACATGTTCGTTGTGCTCGATTGCTCTGAGTCCATGAGCGTGCCTGAT
TTGAAACCCACACGACTGCGGTGCACCGTCAAGCTGCTGGAGCTGTTTAT
CGAGGAGTTCTTCGATCAGAACCCCATCAGCCAATTAGGACTCATAGCGC
TAAAAGCTAAGCGAGCGGAGAAGGTGACCGAACTTACCGGCACTTCGCGC
GTGCACCTCAAAGCGCTAGAGAGCTTGGCTAACGTGTCCTTGACCAGCGA
GCCTTCGCTGCAAAATGGCCTAGATCTGGCCCTAAAATCGCTTAAGGTGG
TGCCGTCGCACGCCTCCCGAGAGATCGTCATTATCATGGGCTCGCTCACC
ACATGTGATCCTGTCGATATTAACCTCACCATCGACGAGTTAAAAAAGGA
GGGCATACGCTGCTCGGTTATTTCCCTGTCCGCTGAGATTCACGTGGCCC
GCTACCTCACTCAGCAAACAATGGGCACCTTCGGGGCTGTTTTGGATGAT
GCACATTTTCGGGATCAACTCATGTCTCAGGTAGATCCACCGCCCGCCGC
TAAGACTCAGCACAACTCGCTTATTCGCATGGGCTTCCCGCACACAAAGA
ATGAAGTTGAGGGCAAGGACGCGCCATTGTCCATGTGCATGTGCCACATA
GAGAACTTGGAGGAGCCCAGTGAACTGACCACTACTGGCCACCACTGCCC
GCAATGCAACAGCAAGTACTGCGAGCTGCCCGTGGAGTGCCAGTCTTGCG
GCCTCACCCTGGTCTCCGCGCCGCACTTGGCGCGTTCCTACCACCACCTT
TTCCCGGTGCCAAATTTTGAGGAACTGCCGTTTGAGGCGATGCCTGCTTC
GTCATCCGACCTCACCAGCGATGTCAGGGAATGTTACGGCTGCGCCAAAG
CTCTTGGGCAAGGCGTTGACAAGGTCGCCGATAAAGTCGTCTTCAGATGC
GGTTTCTGCAAGCAGTTCTTCTGCGTTGACTGCGACATCTTCATTCACGA
CACATTGCACGCCTGCGTGGGATGCAACACCATTCCCGGCGTAGACGGTC
TGGTTTACCAGCAAAGTTCCAAGTCTGACCAGGTTGATGCACACCCAGGG
CCCTCAAAGCAGCGCGGCCAGTGTGGGATGTAACGAAGCTTTCTAGACCA
T
BS01140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssl1-RB | 1317 | CG11115-PB | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Ssl1-RA | 1317 | CG11115-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssl1-RB | 1613 | CG11115-RB | 121..1438 | 17..1334 | 6590 | 100 | Plus |
Ssl1-RA | 1713 | CG11115-RA | 221..1538 | 17..1334 | 6590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22879876..22880788 | 422..1334 | 4565 | 100 | Plus |
3L | 28110227 | 3L | 22879483..22879825 | 81..423 | 1715 | 100 | Plus |
3L | 28110227 | 3L | 22879366..22879431 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:39:04 has no hits.
BS01140.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:46 Download gff for
BS01140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 1..1317 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:51 Download gff for
BS01140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 218..1548 | 10..1345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:48 Download gff for
BS01140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 221..1538 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:46 Download gff for
BS01140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 218..1548 | 10..1345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:34 Download gff for
BS01140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 221..1538 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:34 Download gff for
BS01140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22879366..22879430 | 17..81 | 100 | -> | Plus |
3L | 22879484..22879825 | 82..423 | 100 | -> | Plus |
3L | 22879878..22880788 | 424..1335 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:48 Download gff for
BS01140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22872466..22872530 | 17..81 | 100 | -> | Plus |
arm_3L | 22872584..22872925 | 82..423 | 100 | -> | Plus |
arm_3L | 22872978..22873888 | 424..1335 | 99 | | Plus |
BS01140.pep Sequence
Translation from 16 to 1332
> BS01140.pep
MADDEQEDQKEYRWETGYEKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQA
QKSKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFD
QNPISQLGLIALKAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQN
GLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINLTIDELKKEGIRCS
VISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPAAKTQHN
SLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK
YCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLT
SDVRECYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHAC
VGCNTIPGVDGLVYQQSSKSDQVDAHPGPSKQRGQCGM*
BS01140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssl1-PB | 438 | CG11115-PB | 1..438 | 1..438 | 2315 | 100 | Plus |
Ssl1-PA | 438 | CG11115-PA | 1..438 | 1..438 | 2315 | 100 | Plus |