Clone Sequence Records
BS01143.3prime Sequence
890 bp (827 high quality bases) assembled on 2005-11-30
> BS01143.3prime
ATGGTCTAGAAAGCTTCGTTATGTCAGGTCCTGCTGCGAATCTATCGAGA
ACAGCTCCTTGTACAGCGCCGGAAAAACGACATTCGGGTGCTGCAGCTTG
AACTTGCTCAGCGATTCCATGTGCAAGATGGAAATATCGCGGAAATTGGG
TATATTGTTCAGCAGTGTGTCCAGCACGGTGACATCGCCCTTGAGCGGCG
CATGATTCGTTTCCAGCTCCTGCCGGATCGCATTCATGCTCAGATTGAAA
AGCCTCTGTATTTCCGTATTACCACGCACTCCATTGCGTTCTGGCCAGAG
CAGCACTAAGCTCTGATACAGCGCCAGTTCGGTTTCAGTCAGTTTGAGTT
CGGCTATCGACTTGGCCGTTTGGAAGATGCGCGACACCAGACGCATCTCT
TCCGAGTCGGATGTGTAGAACGCCTCCTGGGGCAGCATCACGTCGCCGTA
GAGAACCGCGTTCTGTGAGAGATCAAGCAGTCTGGACATGCGAACAATCG
CCAGCTCAAAGGAGCCCGTCTTCAGCAGTAATATCTGATCGTCCTGACTT
AGGCGCATGAATCCCGGTATGAGCTTAGCAAATTCGATTATGTTCTGTAT
CATTTGTGTAAGCTTCTCGGCGCAGTCCAGCCAGAGTTCCTCTTGGCCCA
GATTCTTGTAGTAGAGAATGCGCGACACATCCGGCTGCTTTCGGAACATG
TCGTGCACAGCTTCCAGTTTGGTATTTGTGTTGGCATGCGCCTCCGCCAG
CGTCTTGATCAGCACATCGTTGATATCGCCATCCGCGTGACTAATAAATT
CGGGATCGATTATTGTACTGCGCGGCTCGTAGGTGGTGCTGTCCACGTAG
TCCGCCGAGATGTCGTACTGCATGGTCTGCTGTGGCGTCA
BS01143.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33183-PC | 2085 | Hr46-RC | 1214..2085 | 890..19 | 4360 | 100 | Minus |
| CG33183-PB | 1335 | Hr46-RB | 464..1335 | 890..19 | 4360 | 100 | Minus |
| CG33183-PA | 1464 | Hr46-RA | 593..1464 | 890..19 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12912-RB | 6466 | CG12912-RB | 3041..3913 | 890..18 | 4365 | 100 | Minus |
| Hr46-RG | 4175 | CG33183-RG | 750..1622 | 890..18 | 4365 | 100 | Minus |
| Hr46-RF | 7524 | CG33183-RF | 2640..3512 | 890..18 | 4365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10208401..10208646 | 291..536 | 1230 | 100 | Plus |
| 2R | 25286936 | 2R | 10208191..10208343 | 140..292 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 10208706..10208853 | 535..682 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 10208007..10208129 | 18..140 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 10208920..10209025 | 681..786 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 10209101..10209205 | 786..890 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 14:15:36 has no hits.
BS01143.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:03 Download gff for
BS01143.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-PB | 465..1335 | 19..889 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:22 Download gff for
BS01143.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33183-PA | 594..1464 | 19..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:08:43 Download gff for
BS01143.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RH | 2647..3521 | 14..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:55:54 Download gff for
BS01143.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RF | 2641..3515 | 14..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:55:54 Download gff for
BS01143.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10208004..10208128 | 14..139 | 99 | <- | Plus |
| 2R | 10208191..10208341 | 140..290 | 100 | <- | Plus |
| 2R | 10208401..10208644 | 291..534 | 100 | <- | Plus |
| 2R | 10208706..10208852 | 535..681 | 100 | <- | Plus |
| 2R | 10208921..10209024 | 682..785 | 100 | <- | Plus |
| 2R | 10209101..10209204 | 786..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:08:43 Download gff for
BS01143.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6095509..6095633 | 14..139 | 99 | <- | Plus |
| arm_2R | 6095696..6095846 | 140..290 | 100 | <- | Plus |
| arm_2R | 6095906..6096149 | 291..534 | 100 | <- | Plus |
| arm_2R | 6096211..6096357 | 535..681 | 100 | <- | Plus |
| arm_2R | 6096426..6096529 | 682..785 | 100 | <- | Plus |
| arm_2R | 6096606..6096709 | 786..889 | 100 | | Plus |
BS01143.5prime Sequence
848 bp (751 high quality bases) assembled on 2005-11-30
> BS01143.5prime
GAAGTTATCAGTCGACATGACAGCTCAAATTGAGATAATTCCATGCAAAG
TCTGCGGCGACAAGTCATCCGGCGTGCATTACGGAGTGATCACCTGCGAG
GGCTGCAAGGGATTCTTTCGAAGATCGCAGAGCTCCGTGGTCAACTACCA
GTGTCCGCGCAACAAGCAATGTGTGGTGGACCGTGTTAATCGCAACCGAT
GTCAATATTGTAGACTGCAAAAGTGCCTAAAACTGGGAATGAGCCGTGAT
GCTGTAAAGTTCGGCAGGATGTCCAAGAAGCAGCGCGAGAAGGTCGAGGA
CGAGGTACGCTTCCATCGGGCCCAGATGCGGGCACAAAGCGACGCGGCAC
CGGATAGCTCCGTATACGACACACAGACGCCCTCGAGCAGCGACCAGCTG
CATCACAACAATTACAACAGCGGCGGCTACTCCAACAACGAGGTGGGCTA
CGGCAGTCCCTACGGATACTCGGCCTCCGTGACGCCACAGCAGACCATGC
AGTACGACATCTCGGCGGACTACGTGGACAGCACCACCTACGAGCCGCGC
AGTACAATAATCGATCCCGAATTTATTAGTCACGCGGATGGCGATATCAA
CGATGTGCTGATCAAGACGCTGGCGGAGGCGCATGCCAACACAAATACCA
AACTGGAAGCTGTGCACGACATGTTCCGAAAGCAGCCGGATGTGTCGCGC
ATTCTCTACTACAAGAATCTGGGCCAAGAGGAACTCTGGCTGGACTGCGC
CGAGAAGCTTACACAAATGATACAGAACATAATCGAATTTGCTAAGCTCA
TACCGGGATTCATGCGCCTAAGTCAGGACGATCAGATATTACTGCTGA
BS01143.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33183-PC | 2085 | Hr46-RC | 750..1582 | 16..848 | 4165 | 100 | Plus |
| CG33183-PB | 1335 | Hr46-RB | 1..832 | 17..848 | 4160 | 100 | Plus |
| CG33183-PA | 1464 | Hr46-RA | 530..961 | 417..848 | 2160 | 100 | Plus |
| CG33183-PA | 1464 | Hr46-RA | 129..528 | 22..421 | 2000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12912-RB | 6466 | CG12912-RB | 2577..3409 | 16..848 | 4165 | 100 | Plus |
| Hr46-RE | 6385 | CG33183-RE | 2496..3328 | 16..848 | 4165 | 100 | Plus |
| Hr46-RC | 6466 | CG33183-RC | 2577..3409 | 16..848 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10209880..10210111 | 251..20 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 10209440..10209609 | 420..251 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 10209101..10209268 | 584..417 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 10208706..10208853 | 835..688 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 10208920..10209025 | 689..584 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:22:50 has no hits.
BS01143.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:04 Download gff for
BS01143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-PC | 747..1581 | 10..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:24 Download gff for
BS01143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33183-PC | 747..1581 | 10..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:27 Download gff for
BS01143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12912-RB | 2574..3408 | 10..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:21 Download gff for
BS01143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RC | 2574..3408 | 10..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:21 Download gff for
BS01143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10208706..10208852 | 689..835 | 100 | <- | Minus |
| 2R | 10208921..10209024 | 585..688 | 100 | <- | Minus |
| 2R | 10209101..10209264 | 421..584 | 100 | <- | Minus |
| 2R | 10209440..10209608 | 252..420 | 100 | <- | Minus |
| 2R | 10209880..10210111 | 20..251 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:27 Download gff for
BS01143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6096211..6096357 | 689..835 | 100 | <- | Minus |
| arm_2R | 6096426..6096529 | 585..688 | 100 | <- | Minus |
| arm_2R | 6096606..6096769 | 421..584 | 100 | <- | Minus |
| arm_2R | 6096945..6097113 | 252..420 | 100 | <- | Minus |
| arm_2R | 6097385..6097616 | 20..251 | 100 | | Minus |
BS01143.complete Sequence
1369 bp (1369 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634542
> BS01143.complete
GAAGTTATCAGTCGACATGACAGCTCAAATTGAGATAATTCCATGCAAAG
TCTGCGGCGACAAGTCATCCGGCGTGCATTACGGAGTGATCACCTGCGAG
GGCTGCAAGGGATTCTTTCGAAGATCGCAGAGCTCCGTGGTCAACTACCA
GTGTCCGCGCAACAAGCAATGTGTGGTGGACCGTGTTAATCGCAACCGAT
GTCAATATTGTAGACTGCAAAAGTGCCTAAAACTGGGAATGAGCCGTGAT
GCTGTAAAGTTCGGCAGGATGTCCAAGAAGCAGCGCGAGAAGGTCGAGGA
CGAGGTACGCTTCCATCGGGCCCAGATGCGGGCACAAAGCGACGCGGCAC
CGGATAGCTCCGTATACGACACACAGACGCCCTCGAGCAGCGACCAGCTG
CATCACAACAATTACAACAGCGGCGGCTACTCCAACAACGAGGTGGGCTA
CGGCAGTCCCTACGGATACTCGGCCTCCGTGACGCCACAGCAGACCATGC
AGTACGACATCTCGGCGGACTACGTGGACAGCACCACCTACGAGCCGCGC
AGTACAATAATCGATCCCGAATTTATTAGTCACGCGGATGGCGATATCAA
CGATGTGCTGATCAAGACGCTGGCGGAGGCGCATGCCAACACAAATACCA
AACTGGAAGCTGTGCACGACATGTTCCGAAAGCAGCCGGATGTGTCGCGC
ATTCTCTACTACAAGAATCTGGGCCAAGAGGAACTCTGGCTGGACTGCGC
CGAGAAGCTTACACAAATGATACAGAACATAATCGAATTTGCTAAGCTCA
TACCGGGATTCATGCGCCTAAGTCAGGACGATCAGATATTACTGCTGAAG
ACGGGCTCCTTTGAGCTGGCGATTGTTCGCATGTCCAGACTGCTTGATCT
CTCACAGAACGCGGTTCTCTACGGCGACGTGATGCTGCCCCAGGAGGCGT
TCTACACATCCGACTCGGAAGAGATGCGTCTGGTGTCGCGCATCTTCCAA
ACGGCCAAGTCGATAGCCGAACTCAAACTGACTGAAACCGAACTGGCGCT
GTATCAGAGCTTAGTGCTGCTCTGGCCAGAACGCAATGGAGTGCGTGGTA
ATACGGAAATACAGAGGCTTTTCAATCTGAGCATGAATGCGATCCGGCAG
GAGCTGGAAACGAATCATGCGCCGCTCAAGGGCGATGTCACCGTGCTGGA
CACACTGCTGAACAATATACCCAATTTCCGCGATATTTCCATCTTGCACA
TGGAATCGCTGAGCAAGTTCAAGCTGCAGCACCCGAATGTCGTTTTTCCG
GCGCTGTACAAGGAGCTGTTCTCGATAGATTCGCAGCAGGACCTGACATA
ACGAAGCTTTCTAGACCAT
BS01143.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr46-RE | 2625 | CG33183-PE | 1290..2625 | 16..1351 | 6680 | 100 | Plus |
| Hr46-RC | 2085 | CG33183-PC | 750..2085 | 16..1351 | 6680 | 100 | Plus |
| Hr46-RD | 1371 | CG33183-PD | 42..1371 | 22..1351 | 6650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12912-RB | 6466 | CG12912-RB | 2577..3913 | 16..1352 | 6685 | 100 | Plus |
| Hr46-RE | 6385 | CG33183-RE | 2496..3832 | 16..1352 | 6685 | 100 | Plus |
| Hr46-RC | 6466 | CG33183-RC | 2577..3913 | 16..1352 | 6685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10208401..10208646 | 1079..834 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 10209880..10210111 | 251..20 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 10209440..10209609 | 420..251 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 10209101..10209268 | 584..417 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 10208191..10208343 | 1230..1078 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 10208706..10208853 | 835..688 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 10208007..10208129 | 1352..1230 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 10208920..10209025 | 689..584 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:08:43 has no hits.
BS01143.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:47 Download gff for
BS01143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RC | 747..2085 | 10..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:53 Download gff for
BS01143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RB | 86..1428 | 10..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:16 Download gff for
BS01143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12912-RB | 2578..3913 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:47 Download gff for
BS01143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RB | 86..1428 | 10..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:43 Download gff for
BS01143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RC | 2578..3913 | 17..1353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:43 Download gff for
BS01143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10208006..10208128 | 1231..1353 | 99 | <- | Minus |
| 2R | 10208191..10208341 | 1080..1230 | 100 | <- | Minus |
| 2R | 10208401..10208644 | 836..1079 | 100 | <- | Minus |
| 2R | 10208706..10208852 | 689..835 | 100 | <- | Minus |
| 2R | 10208921..10209024 | 585..688 | 100 | <- | Minus |
| 2R | 10209101..10209264 | 421..584 | 100 | <- | Minus |
| 2R | 10209440..10209608 | 252..420 | 100 | <- | Minus |
| 2R | 10209880..10210112 | 17..251 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:16 Download gff for
BS01143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6096606..6096769 | 421..584 | 100 | <- | Minus |
| arm_2R | 6096945..6097113 | 252..420 | 100 | <- | Minus |
| arm_2R | 6095511..6095633 | 1231..1353 | 99 | <- | Minus |
| arm_2R | 6095696..6095846 | 1080..1230 | 100 | <- | Minus |
| arm_2R | 6095906..6096149 | 836..1079 | 100 | <- | Minus |
| arm_2R | 6096211..6096357 | 689..835 | 100 | <- | Minus |
| arm_2R | 6096426..6096529 | 585..688 | 100 | <- | Minus |
| arm_2R | 6097385..6097617 | 17..251 | 99 | | Minus |
BS01143.pep Sequence
Translation from 16 to 1350
> BS01143.pep
MTAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNK
QCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFH
RAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNNYNSGGYSNNEVGYGSPYG
YSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIK
TLAEAHANTNTKLEAVHDMFRKQPDVSRILYYKNLGQEELWLDCAEKLTQ
MIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAV
LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLV
LLWPERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNN
IPNFRDISILHMESLSKFKLQHPNVVFPALYKELFSIDSQQDLT*
BS01143.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr46-PE | 874 | CG33183-PE | 431..874 | 1..444 | 2299 | 100 | Plus |
| Hr46-PC | 694 | CG33183-PC | 251..694 | 1..444 | 2299 | 100 | Plus |
| Hr46-PD | 456 | CG33183-PD | 15..456 | 3..444 | 2289 | 100 | Plus |
| Hr46-PF | 487 | CG33183-PF | 44..487 | 3..444 | 2276 | 99.5 | Plus |
| Hr46-PH | 529 | CG33183-PH | 44..487 | 3..444 | 2276 | 99.5 | Plus |
