Clone Sequence Records
BS01148.3prime Sequence
894 bp (779 high quality bases) assembled on 2005-11-30
> BS01148.3prime
ATGGTCTAGAAAGCTTCGTTAGCTCTCTAACATTTCCGGAGAGCTGGGAA
TGGTTTGCTCCATTTTGTTGCGGTGGGTTAGCGTTTGCAGGTGAGCTTTC
AGCTGGTGCAGCAGAGTGAATGACTTGCAACAGATACCACAGTTGTAATT
CTTTTGGGCGGAGTGCGAAAGGATGTGATTTTTGAGGATGGCTGTGTGCG
TAAAAGTTTTCCCGCACTCCTGGCAGGCATAAGGACGCGTGTTGGTGTGG
ACCCGTTCATGGCGGACCCGTTCGCTGCGATCGTAGAAGTGGCGGTCGCA
GTACATACACTTGTATGGACGGTCGCCCGTATGACGACGGATGTGTGCTC
GCAATTCGCCCATTTGTCGAAAAGATTTATTGCATATTTCGCATTGGTGG
GGCTTGTACTCTGAATGGGTCATCATGTGGGCCGTGAAAACAGATTTCTT
GTAAAAGACGTTTCCGCACAGGATGCACATGAACTTCTCCTCTTCCTTGC
ACTTTGGCTGGTTCCCCCTTTCCTTGGCGTTGATATCCTTGCGTTTGAAT
TTCAGTTCGGCGTCCGGTTTGCGAGGCCTTCCCGGCTTTTGTTTGTCCAT
TTTGAAGCTGGGATGTGGCGAAGGAGCGCTTGACATGAGAAGTTCCTCGT
CCCCGTACTCAACCTCATAAAACGTGTTTGCATTGGATAATTCCTCGACA
AGCTCACCCTTATCATCAATGAGTTCTTCCATTTGTTGATCATCAACGTA
GGAGTCCATGTGGGAAATCAGAATCTGCTCAGGACTTTCCGTATTANGCT
CTTCGTCCTCCTCAATCGATTCGTTTATGATAAATCCGTTAAAATCGAGA
ACTTCCTGGGACTGATCCTCCTGCTGTTCATCCCCCTCCTCTAT
BS01148.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14710-PA | 1344 | CG14710-RA | 469..1344 | 894..19 | 4361 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14710-RB | 1458 | CG14710-RB | 493..1368 | 894..19 | 4369 | 99.9 | Minus |
CG6808-RB | 1447 | CG6808-RB | 1275..1398 | 19..142 | 620 | 100 | Plus |
CG6808-RA | 3138 | CG6808-RA | 2966..3089 | 19..142 | 620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11620640..11621145 | 894..389 | 2519 | 99.8 | Minus |
3R | 32079331 | 3R | 11621208..11621453 | 388..143 | 1230 | 100 | Minus |
3R | 32079331 | 3R | 11621515..11621638 | 142..19 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:29:49 has no hits.
BS01148.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:08 Download gff for
BS01148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-PA | 469..1344 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:28 Download gff for
BS01148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-PA | 469..1344 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:26:13 Download gff for
BS01148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-RB | 493..1368 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:12 Download gff for
BS01148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-RB | 493..1368 | 19..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:12 Download gff for
BS01148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11620640..11621145 | 389..894 | 99 | -> | Minus |
3R | 11621208..11621453 | 143..388 | 100 | -> | Minus |
3R | 11621515..11621638 | 19..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:26:13 Download gff for
BS01148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7446362..7446867 | 389..894 | 99 | -> | Minus |
arm_3R | 7446930..7447175 | 143..388 | 100 | -> | Minus |
arm_3R | 7447237..7447360 | 19..142 | 100 | | Minus |
BS01148.5prime Sequence
797 bp (796 high quality bases) assembled on 2005-11-30
> BS01148.5prime
GAAGTTATCAGTCGACATGCGGTCACACAGCGCAGGTCTAAAATTGTTTA
AAACTCATTTAATTGAAATTAGCCTTAATTTCCAGCCCCCTTGCAAAAAA
ACGCTAGCCAGGATGGCCAGCTTGCCAGTGATTCTGCAATGCAGGATCTG
CTTGGGCGATTTCGAAGAGAGCCAAATGATCTGCCTGTTTGGGGATAAAG
GCGAAAGTGACCTCAGGAAAAAGTTGGAGCTGTGCTGTAGGATTAGGGTT
CGCCAATCCCCGCAGCTGCCCGAGAAGGCCTGCAACAGCTGTTGCGAATT
CGTCCAAATGTGGTTCAACTTTCGCCAGATGTGCCTGAACTCGCAGGTCT
ACTGGGAAACAAGTTCCTCGGAGAGACCAGAGGCTCTTGCCCAGGCAAGC
GATGCCGAGTATATGTTGTATCTGTACGAGAACCTACATCTGAAACTAGG
CACAGAGAATCAGGAGAAGGAAGAGATCACCGCAATAGAGGAGGGGGATG
AACAGCAGGAGGATCAGTCCCAGGAAGTTCTCGATTTTAACGGATTTATC
ATAAACGAATCGATTGAGGAGGACGAAGAGCCTAATACGGAAAGTCCTGA
GCAGATTCTGATTTCCCACATGGACTCCTACGTTGATGATCAACAAATGG
AAGAACTCATTGATGATAAGGGTGAGCTTGTCGAGGAATTATCCAATGCA
AACACGTTTTATGAGGTTGAGTACGGGGACGAGGAACTTCTCATGTCAAG
CGCTCCTTCGCCACATCCCAGCTTCAAAATGGACAAACAAAAGCCGG
BS01148.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14710-PA | 1344 | CG14710-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14710-RB | 1458 | CG14710-RB | 25..805 | 17..797 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11620402..11620952 | 247..797 | 2755 | 100 | Plus |
3R | 32079331 | 3R | 11620114..11620346 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:10:45 has no hits.
BS01148.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:09 Download gff for
BS01148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-PA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:29 Download gff for
BS01148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-PA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:08:15 Download gff for
BS01148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-RB | 16..805 | 8..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:49:50 Download gff for
BS01148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-RB | 16..805 | 8..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:49:50 Download gff for
BS01148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11620105..11620344 | 8..247 | 98 | -> | Plus |
3R | 11620403..11620952 | 248..797 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:08:15 Download gff for
BS01148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7445827..7446066 | 8..247 | 98 | -> | Plus |
arm_3R | 7446125..7446674 | 248..797 | 100 | | Plus |
BS01148.complete Sequence
1378 bp (1378 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ638762
> BS01148.complete
GAAGTTATCAGTCGACATGCGGTCACACAGCGCAGGTCTAAAATTGTTTA
AAACTCATTTAATTGAAATTAGCCTTAATTTCCAGCCCCCTTGCAAAAAA
ACGCTAGCCAGGATGGCCAGCTTGCCAGTGATTCTGCAATGCAGGATCTG
CTTGGGCGATTTCGAAGAGAGCCAAATGATCTGCCTGTTTGGGGATAAAG
GCGAAAGTGACCTCAGGAAAAAGTTGGAGCTGTGCTGTAGGATTAGGGTT
CGCCAATCCCCGCAGCTGCCCGAGAAGGCCTGCAACAGCTGTTGCGAATT
CGTCCAAATGTGGTTCAACTTTCGCCAGATGTGCCTGAACTCGCAGGTCT
ACTGGGAAACAAGTTCCTCGGAGAGACCAGAGGCTCTTGCCCAGGCAAGC
GATGCCGAGTATATGTTGTATCTGTACGAGAACCTACATCTGAAACTAGG
CACAGAGAATCAGGAGAAGGAAGAGATCACCGCAATAGAGGAGGGGGATG
AACAGCAGGAGGATCAGTCCCAGGAAGTTCTCGATTTTAACGGATTTATC
ATAAACGAATCGATTGAGGAGGACGAAGAGCCTAATACGGAAAGTCCTGA
GCAGATTCTGATTTCCCACATGGACTCCTACGTTGATGATCAACAAATGG
AAGAACTCATTGATGATAAGGGTGAGCTTGTCGAGGAATTATCCAATGCA
AACACGTTTTATGAGGTTGAGTACGGGGACGAGGAACTTCTCATGTCAAG
CGCTCCTTCGCCACATCCCAGCTTCAAAATGGACAAACAAAAGCCGGGAA
GGCCTCGCAAACCGGACGCCGAACTGAAATTCAAACGCAAGGATATCAAC
GCCAAGGAAAGGGGGAACCAGCCAAAGTGCAAGGAAGAGGAGAAGTTCAT
GTGCATCCTGTGCGGAAACGTCTTTTACAAGAAATCTGTTTTCACGGCCC
ACATGATGACCCATTCAGAGTACAAGCCCCACCAATGCGAAATATGCAAT
AAATCTTTTCGACAAATGGGCGAATTGCGAGCACACATCCGTCGTCATAC
GGGCGACCGTCCATACAAGTGTATGTACTGCGACCGCCACTTCTACGATC
GCAGCGAACGGGTCCGCCATGAACGGGTCCACACCAACACGCGTCCTTAT
GCCTGCCAGGAGTGCGGGAAAACTTTTACGCACACAGCCATCCTCAAAAA
TCACATCCTTTCGCACTCCGCCCAAAAGAATTACAACTGTGGTATCTGTT
GCAAGTCATTCACTCTGCTGCACCAGCTGAAAGCTCACCTGCAAACGCTA
ACCCACCGCAACAAAATGGAGCAAACCATTCCCAGCTCTCCGGAAATGTT
AGAGAGCTAACGAAGCTTTCTAGACCAT
BS01148.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14710-RB | 1248 | CG14710-PB | 1..1248 | 113..1360 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14710-RB | 1458 | CG14710-RB | 25..1368 | 17..1360 | 6720 | 100 | Plus |
CG6808-RB | 1447 | CG6808-RB | 1275..1398 | 1360..1237 | 620 | 100 | Minus |
CG6808-RA | 3138 | CG6808-RA | 2966..3089 | 1360..1237 | 620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11620402..11621145 | 247..990 | 3720 | 100 | Plus |
3R | 32079331 | 3R | 11621208..11621453 | 991..1236 | 1230 | 100 | Plus |
3R | 32079331 | 3R | 11620114..11620346 | 17..249 | 1165 | 100 | Plus |
3R | 32079331 | 3R | 11621515..11621638 | 1237..1360 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:58:38 has no hits.
BS01148.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:49 Download gff for
BS01148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-RB | 1..1248 | 113..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:56 Download gff for
BS01148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-RB | 14..1366 | 8..1360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:50 Download gff for
BS01148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-RB | 25..1368 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:50 Download gff for
BS01148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-RB | 14..1366 | 8..1360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:01 Download gff for
BS01148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14710-RB | 25..1368 | 17..1362 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:01 Download gff for
BS01148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11620114..11620344 | 17..247 | 100 | -> | Plus |
3R | 11620403..11621145 | 248..990 | 100 | -> | Plus |
3R | 11621208..11621453 | 991..1236 | 100 | -> | Plus |
3R | 11621515..11621638 | 1237..1362 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:50 Download gff for
BS01148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7445836..7446066 | 17..247 | 100 | -> | Plus |
arm_3R | 7446125..7446867 | 248..990 | 100 | -> | Plus |
arm_3R | 7446930..7447175 | 991..1236 | 100 | -> | Plus |
arm_3R | 7447237..7447360 | 1237..1362 | 98 | | Plus |
BS01148.pep Sequence
Translation from 16 to 1359
> BS01148.pep
MRSHSAGLKLFKTHLIEISLNFQPPCKKTLARMASLPVILQCRICLGDFE
ESQMICLFGDKGESDLRKKLELCCRIRVRQSPQLPEKACNSCCEFVQMWF
NFRQMCLNSQVYWETSSSERPEALAQASDAEYMLYLYENLHLKLGTENQE
KEEITAIEEGDEQQEDQSQEVLDFNGFIINESIEEDEEPNTESPEQILIS
HMDSYVDDQQMEELIDDKGELVEELSNANTFYEVEYGDEELLMSSAPSPH
PSFKMDKQKPGRPRKPDAELKFKRKDINAKERGNQPKCKEEEKFMCILCG
NVFYKKSVFTAHMMTHSEYKPHQCEICNKSFRQMGELRAHIRRHTGDRPY
KCMYCDRHFYDRSERVRHERVHTNTRPYACQECGKTFTHTAILKNHILSH
SAQKNYNCGICCKSFTLLHQLKAHLQTLTHRNKMEQTIPSSPEMLES*
BS01148.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14710-PB | 415 | CG14710-PB | 1..415 | 33..447 | 2245 | 100 | Plus |
trem-PA | 439 | CG4413-PA | 12..419 | 42..437 | 479 | 28.2 | Plus |
CG14711-PA | 377 | CG14711-PA | 1..363 | 36..431 | 471 | 29.3 | Plus |
CG4854-PA | 319 | CG4854-PA | 10..308 | 40..424 | 418 | 27.5 | Plus |
CG4424-PA | 345 | CG4424-PA | 188..325 | 295..432 | 414 | 49.3 | Plus |
CG4854-PA | 319 | CG4854-PA | 180..285 | 324..429 | 193 | 31.1 | Plus |