Clone Sequence Records
BS01152.3prime Sequence
902 bp (791 high quality bases) assembled on 2005-11-30
> BS01152.3prime
ATGGTCTAGAAAGCTTCGTCACTTTATTACCTGCTGCATTTCATCATTGC
GCATGCTGCGCAGTCCCTGTTGCTCCTCGAGCTTGTTGCTCATCAGGCTC
ACCCAATCACGAGCTTGTCTAAGCGATAGGGAGCTCTGAGATCGTTCGGG
TATCCGACACGGGAACAGCATTTCGCGGGCTCCCACAACACAACCGCTGT
CGAGGACAAATACTCGCGGAAAGTCTACTACAAAGTCGCGGCTTCGATTA
AGATCCGCAGATTCGTCCCGTGCCTCAACCAGTGCCAGTCCCTGCGGGGG
ATCAGGCTGATATTCCAGAATACTTTCCTCGCTTCCTAAAAACACATATC
CATAGAACTTCAGGACGTCGAGCTTACACATGGGACAGGTTCGATGCTCT
ATAAGCCACGGATCTATGCAGTTTTTATGGAACTCGTGCTTGCACGGCAA
TATCCGTATGGTGTCCGTGGGCTTATAGGCTTCGATGCATATAGCACAGC
AGTCGCTATCCAAGTCCTTTTCATCGCTGAATTTTCCGGTTTTTGTTGGA
ATCTTCATGATAGCCTTTTTGGTAACAGAGCAGAGATTGCGCGATTGTTG
GTCCTTCGCCTGCATGTAACGGAACCTCTGAATATAGTAGAAGATGAGCC
AAACCAGAGAAATAATCATCAAAACAATAAATGAAATCGACACAAACAGC
ACTGATGTTCTATTTAAGCTGCTAATGGTGCGAACACCTCGTCTTCCCTC
GATGATCGAAATAGTTACATTATAGCCCTTATCAAGAGTCAAAGACAGGT
CTTGCCCCATGTTCTGATAAAGTATAACGGCGGCTATGTTTCTTGTTTTG
CCCTTGATCTGCATCTTCTCCAGCTGCATTACTTGCTTGTCGTTATAAAT
AA
BS01152.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2679-PB | 1386 | gol-RB | 503..1386 | 902..19 | 4345 | 99.6 | Minus |
| CG2679-PA | 861 | gol-RA | 1..537 | 879..343 | 2610 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-RB | 2583 | CG2679-RB | 1061..1944 | 902..19 | 4375 | 99.7 | Minus |
| gol-RD | 2520 | CG2679-RD | 1061..1932 | 902..31 | 4315 | 99.7 | Minus |
| gol-RE | 3725 | CG2679-RE | 1061..1620 | 902..343 | 2755 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25073266..25073590 | 19..343 | 1625 | 100 | Plus |
| 2R | 25286936 | 2R | 25075396..25075549 | 439..592 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 25077174..25077306 | 710..842 | 620 | 97.7 | Plus |
| 2R | 25286936 | 2R | 25075605..25075725 | 592..712 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 25075242..25075338 | 343..439 | 485 | 100 | Plus |
| 2R | 25286936 | 2R | 25077369..25077429 | 842..902 | 305 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 12:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2291..2352 | 656..595 | 112 | 64.5 | Minus |
BS01152.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:17 Download gff for
BS01152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-PB | 505..1386 | 19..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:38 Download gff for
BS01152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2679-PB | 505..1386 | 19..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:41:04 Download gff for
BS01152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 1061..1952 | 10..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:48:40 Download gff for
BS01152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 1061..1952 | 10..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:48:40 Download gff for
BS01152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25077370..25077429 | 843..902 | 100 | | Plus |
| 2R | 25073257..25073589 | 10..342 | 98 | <- | Plus |
| 2R | 25075242..25075338 | 343..439 | 100 | <- | Plus |
| 2R | 25075397..25075548 | 440..591 | 100 | <- | Plus |
| 2R | 25075605..25075722 | 592..709 | 100 | <- | Plus |
| 2R | 25077174..25077306 | 710..842 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:41:04 Download gff for
BS01152.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20960780..20961112 | 10..342 | 98 | <- | Plus |
| arm_2R | 20962765..20962861 | 343..439 | 100 | <- | Plus |
| arm_2R | 20962920..20963071 | 440..591 | 100 | <- | Plus |
| arm_2R | 20963128..20963245 | 592..709 | 100 | <- | Plus |
| arm_2R | 20964697..20964829 | 710..842 | 97 | <- | Plus |
| arm_2R | 20964893..20964952 | 843..902 | 100 | | Plus |
BS01152.5prime Sequence
813 bp (702 high quality bases) assembled on 2005-11-30
> BS01152.5prime
GAAGTTATCAGTCGACATGTATATACGGAAAACGCTCCTACTGGCTTGCC
TTGTTTTGCTGTTCGGGGGACTCCCGCCTCTCACCTTCCCTGCAACGACC
ACTACCTTAGTGGCGGCCATGTCCATCGCAAATCAGGACTTGGAGCGCTA
CTTTCGACCAGGCAACGGCACTCACAGCTTCTCCGGCATGGAAGATCGTA
TTGCCGTGGACGTCTATAACTACGCCTTTCTTAACTGGTCATACGTAGAG
CACGGTAACATGCTGTGCAACATGGAATTCGCCCAAGAACAGGCCCGTTA
CGGAGAGGGCAAGGTGTTGAACGTAACGGGACGGTTAATTCACATCACCG
CCACGGACAACTTTAGTGACGATTACGCGTGCACGCCGTACATCCGAGGA
ACCTTGGGAGCACCCATACCAGATAAAGGGGAGACATGGATTGCATTGGT
GCGACGGGGCCGCTGCACCTTTGAGGAAAAAGTTAAACATGTCTACCAGC
AAAATGCTGCCGGTGTTATTATTTATAACGACAAGCAAGTAATGCAGCTG
GAGAAGATGCAGATCAAGGGCAAAACAAGAAACATAGCCGCCGTTATAAC
TTATCAGAACATTGGGCAAGACCTGTCTTTGACTCTTGATAAGGGCTATA
ATGTAACTATTTCGATCATCGAGGGAAGACGAGGTGTTCGCACCATTAGC
AGCTTAAATAGAACATCAGTGCTGTTTGTGTCGATTTCATTTATTGTTTT
GATGATTATTTCTCTGGTTTGGCTCATCTTCTACTATATTCAGAGGTTCC
GTTACATGCANGC
BS01152.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2679-PB | 1386 | gol-RB | 1..794 | 17..810 | 3970 | 100 | Plus |
| CG2679-PA | 861 | gol-RA | 1..269 | 542..810 | 1345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-RE | 3725 | CG2679-RE | 559..1352 | 17..810 | 3970 | 100 | Plus |
| gol-RD | 2520 | CG2679-RD | 559..1352 | 17..810 | 3970 | 100 | Plus |
| gol-RC | 3193 | CG2679-RC | 559..1352 | 17..810 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25077369..25077931 | 579..17 | 2815 | 100 | Minus |
| 2R | 25286936 | 2R | 25077174..25077306 | 711..579 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 25075624..25075725 | 810..709 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:55:02 has no hits.
BS01152.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:18 Download gff for
BS01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-PB | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:39 Download gff for
BS01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2679-PB | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:33:18 Download gff for
BS01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RC | 555..1355 | 13..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:03:22 Download gff for
BS01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RC | 555..1355 | 13..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:03:22 Download gff for
BS01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25075621..25075722 | 712..813 | 99 | <- | Minus |
| 2R | 25077174..25077306 | 579..711 | 100 | <- | Minus |
| 2R | 25077370..25077934 | 11..578 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:33:18 Download gff for
BS01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20964697..20964829 | 579..711 | 100 | <- | Minus |
| arm_2R | 20963144..20963245 | 712..813 | 99 | <- | Minus |
| arm_2R | 20964893..20965457 | 11..578 | 99 | <- | Minus |
BS01152.complete Sequence
1420 bp (1420 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634545
> BS01152.complete
GAAGTTATCAGTCGACATGTATATACGGAAAACGCTCCTACTGGCTTGCC
TTGTTTTGCTGTTCGGGGGACTCCCGCCTCTCACCTTCCCTGCAACGACC
ACTACCTTAGTGGCGGCCATGTCCATCGCAAATCAGGACTTGGAGCGCTA
CTTTCGACCAGGCAACGGCACTCACAGCTTCTCCGGCATGGAAGATCGTA
TTGCCGTGGACGTCTATAACTACGCCTTTCTTAACTGGTCATACGTAGAG
CACGGTAACATGCTGTGCAACATGGAATTCGCCCAAGAACAGGCCCGTTA
CGGAGAGGGCAAGGTGTTGAACGTAACGGGACGGTTAATTCACATCACCG
CCACGGACAACTTTAGTGACGATTACGCGTGCACGCCGTACATCCGAGGA
ACCTTGGGAGCACCCATACCAGATAAAGGGGAGACATGGATTGCATTGGT
GCGACGGGGCCGCTGCACCTTTGAGGAAAAAGTTAAACATGTCTACCAGC
AAAATGCTGCCGGTGTTATTATTTATAACGACAAGCAAGTAATGCAGCTG
GAGAAGATGCAGATCAAGGGCAAAACAAGAAACATAGCCGCCGTTATAAC
TTATCAGAACATTGGGCAAGACCTGTCTTTGACTCTTGATAAGGGCTATA
ATGTAACTATTTCGATCATCGAGGGAAGACGAGGTGTTCGCACCATTAGC
AGCTTAAATAGAACATCAGTGCTGTTTGTGTCGATTTCATTTATTGTTTT
GATGATTATTTCTCTGGTTTGGCTCATCTTCTACTATATTCAGAGGTTCC
GTTACATGCAGGCGAAGGACCAACAATCGCGCAATCTCTGCTCTGTTACC
AAAAAGGCTATCATGAAGATTCCAACAAAAACCGGAAAATTCAGCGATGA
AAAGGACTTGGATAGCGACTGCTGTGCTATATGCATCGAAGCCTATAAGC
CCACGGACACCATACGGATATTGCCGTGCAAGCACGAGTTCCATAAAAAC
TGCATAGATCCGTGGCTTATAGAGCATCGAACCTGTCCCATGTGTAAGCT
CGACGTCCTGAAGTTCTATGGATATGTGTTTTTAGGAAGCGAGGAAAGTA
TTCTGGAATATCAGCCTGATCCCCCGCAGGGACTGGCACTGGTTGAGGCA
CGGGACGAATCTGCGGATCTTAATCGAAGCCGCGACTTTGTAGTAGACTT
TCCGCGAGTATTTGTCCTCGACAGCGGTTGTGTTGTGGGAGCCCGCGAAA
TGCTGTTCCCGTGTCGGATACCCGAACGATCTCAGAGCTCCCTATCGCTT
AGACAAGCTCGTGATTGGGTGAGCCTGATGAGCAACAAGCTCGAGGAGCA
ACAGGGACTGCGCAGCATGCGCAATGATGAAATGCAGCAGGTAATAAAGT
GACGAAGCTTTCTAGACCAT
BS01152.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-RB | 1386 | CG2679-PB | 1..1386 | 17..1402 | 6930 | 100 | Plus |
| gol-RD | 1806 | CG2679-PD | 1..1374 | 17..1390 | 6870 | 100 | Plus |
| gol-RE | 1386 | CG2679-PE | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-RB | 2583 | CG2679-RB | 559..1944 | 17..1402 | 6930 | 100 | Plus |
| gol-RD | 2520 | CG2679-RD | 559..1932 | 17..1390 | 6870 | 100 | Plus |
| gol-RE | 3725 | CG2679-RE | 559..1620 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25077369..25077931 | 579..17 | 2815 | 100 | Minus |
| 2R | 25286936 | 2R | 25073266..25073590 | 1402..1078 | 1625 | 100 | Minus |
| 2R | 25286936 | 2R | 25075396..25075549 | 982..829 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 25077174..25077306 | 711..579 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 25075605..25075725 | 829..709 | 605 | 100 | Minus |
| 2R | 25286936 | 2R | 25075242..25075338 | 1078..982 | 485 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2291..2352 | 765..826 | 112 | 64.5 | Plus |
BS01152.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:40 Download gff for
BS01152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 1..1386 | 17..1402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:43 Download gff for
BS01152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 528..1925 | 13..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:38 Download gff for
BS01152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 559..1944 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:41 Download gff for
BS01152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 528..1925 | 13..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:21 Download gff for
BS01152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 559..1944 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:21 Download gff for
BS01152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25075605..25075722 | 712..829 | 100 | <- | Minus |
| 2R | 25077174..25077306 | 579..711 | 100 | <- | Minus |
| 2R | 25073263..25073589 | 1079..1404 | 99 | <- | Minus |
| 2R | 25075242..25075338 | 982..1078 | 100 | <- | Minus |
| 2R | 25075397..25075548 | 830..981 | 100 | <- | Minus |
| 2R | 25077370..25077931 | 17..578 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:38 Download gff for
BS01152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20962765..20962861 | 982..1078 | 100 | <- | Minus |
| arm_2R | 20962920..20963071 | 830..981 | 100 | <- | Minus |
| arm_2R | 20963128..20963245 | 712..829 | 100 | <- | Minus |
| arm_2R | 20964697..20964829 | 579..711 | 100 | <- | Minus |
| arm_2R | 20960786..20961112 | 1079..1404 | 99 | <- | Minus |
| arm_2R | 20964893..20965454 | 17..578 | 100 | | Minus |
BS01152.pep Sequence
Translation from 16 to 1401
> BS01152.pep
MYIRKTLLLACLVLLFGGLPPLTFPATTTTLVAAMSIANQDLERYFRPGN
GTHSFSGMEDRIAVDVYNYAFLNWSYVEHGNMLCNMEFAQEQARYGEGKV
LNVTGRLIHITATDNFSDDYACTPYIRGTLGAPIPDKGETWIALVRRGRC
TFEEKVKHVYQQNAAGVIIYNDKQVMQLEKMQIKGKTRNIAAVITYQNIG
QDLSLTLDKGYNVTISIIEGRRGVRTISSLNRTSVLFVSISFIVLMIISL
VWLIFYYIQRFRYMQAKDQQSRNLCSVTKKAIMKIPTKTGKFSDEKDLDS
DCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMCKLDVLKF
YGYVFLGSEESILEYQPDPPQGLALVEARDESADLNRSRDFVVDFPRVFV
LDSGCVVGAREMLFPCRIPERSQSSLSLRQARDWVSLMSNKLEEQQGLRS
MRNDEMQQVIK*
BS01152.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-PB | 461 | CG2679-PB | 1..461 | 1..461 | 2413 | 100 | Plus |
| gol-PD | 601 | CG2679-PD | 1..458 | 1..458 | 2400 | 100 | Plus |
| gol-PE | 461 | CG2679-PE | 1..376 | 1..381 | 1875 | 94.8 | Plus |
| gol-PC | 461 | CG2679-PC | 1..376 | 1..381 | 1875 | 94.8 | Plus |
| godzilla-PD | 536 | CG10277-PD | 89..280 | 141..347 | 208 | 28.7 | Plus |
