Clone BS01154 Report

Search the DGRC for BS01154

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:54
Vector:pDNR-Dual
Associated Gene/Transcripttup-RB
Protein status:BS01154.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01154.3prime Sequence

807 bp (762 high quality bases) assembled on 2005-11-30

> BS01154.3prime
ATGGTCTAGAAAGCTTCGCTACGGACTGCCCTGCATACTGTCATCGCTCT
CCAGGTAGGTGACGTAGGAGTCGGTGCTGTCCGGATGGTGGTGCGAGGTG
ATCCCGGAGTCCAAACTGCTGCCTCCGGGCTGCTGGTTCGGCTGCTGGTT
CTGATGGTTGTGCGGTCCGCCGGGGGGCGGGGGGTGCTGGTGGGGAGGTC
CTTGCGCCGGATGCGAGTGCGGATGCGGCGGCAGAATGGGCATCCCGTTC
AGGTCGTAGCCGTGCATCTGATTGACCAACTGCTGAAATGCGGGCGTGTG
GGTATTGATCGCTCCATTGCTGTCGAGATCGGCGTGAAGGGCGAAGTCGC
TTAAGGCTTTCCATGGCGGTTGATATGTCTGCACATCCAGGCCCTGAAGA
TTCAGTGGGGAGTCATGCCGCACCGGGGAACTGGCGATCATGGGGATGCC
CTGCATGGCGCCGTAGCCCAGCTTGCGACCCTCCTTCTCCTGCTGCATTT
GCAGCTTCATCTGAATGGTCTTCTTCTTGTCCTTGCAGCGCTTGTTCTGG
AACCATACTCGGATGACTCGCGGCGACAGGCTCGTCATCTCCACCAGCTG
CTCCTTCATGAGCGCATCAGGTCGCGGATTAGCATTGTAGCAGGTTCTGA
GCGTATGCAGCTGTTTCTCATTGAGCACGGTCCGAACCCGCGTGGGCTTG
CCATCCGATGGCCCCGAGGGTCGCTTGTCCCTAATACTTTTGTGTGAGCC
CGATTCGCTGCCAGAATCTGACATTGAACCCCATTCGCTGGAATGGTTGT
TATTTGC

BS01154.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10619-PB 1398 tup-RB 613..1398 804..19 3905 99.8 Minus
CG10619-PA 1605 tup-RA 613..1378 804..39 3805 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
tup-RB 3314 CG10619-RB 1079..1864 804..19 3915 99.9 Minus
tup-RC 2270 CG10619-RC 1079..1844 804..39 3815 99.9 Minus
tup-RA 3251 CG10619-RA 1079..1844 804..39 3815 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18860957..18861208 19..270 1260 100 Plus
2L 23513712 2L 18861682..18861899 268..485 1090 100 Plus
2L 23513712 2L 18861955..18862122 483..650 840 100 Plus
2L 23513712 2L 18862180..18862303 647..770 620 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:20:32 has no hits.

BS01154.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:20 Download gff for BS01154.3prime
Subject Subject Range Query Range Percent Splice Strand
tup-PB 611..1398 19..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:43 Download gff for BS01154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10619-PB 611..1398 19..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:40:27 Download gff for BS01154.3prime
Subject Subject Range Query Range Percent Splice Strand
tup-RB 1077..1868 15..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:38:33 Download gff for BS01154.3prime
Subject Subject Range Query Range Percent Splice Strand
tup-RB 1077..1868 15..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:38:33 Download gff for BS01154.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18860953..18861205 15..267 99 <- Plus
2L 18861682..18861897 268..483 100 <- Plus
2L 18861956..18862118 484..646 100 <- Plus
2L 18862180..18862300 647..767 100 <- Plus
2L 18864095..18864133 768..807 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:40:27 Download gff for BS01154.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18861956..18862118 484..646 100 <- Plus
arm_2L 18860953..18861205 15..267 99 <- Plus
arm_2L 18861682..18861897 268..483 100 <- Plus
arm_2L 18862180..18862300 647..767 100 <- Plus
arm_2L 18864095..18864133 768..807 95   Plus

BS01154.5prime Sequence

860 bp (825 high quality bases) assembled on 2005-11-30

> BS01154.5prime
GAAGTTATCAGTCGACATGGTAATGGCAGAGATTGGTGGCCATTTGGCTC
ACCAGCTACCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCA
TCGCTGGTGATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGT
GATAAAAAAACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCC
ACGATCAGTACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCG
TGTCTGAAGTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTG
TTTTGTGCGCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTAT
TTGGTACAAAATGTGATAAATGCGGCAACTCCTTCAGCAAAAATGATTTT
GTGATGCGGGCCAAAACGAAAATCTTTCACATCGAGTGCTTTCGATGCTC
CGCGTGTGCGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATG
CCGGGGCTTTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCG
CAGAGCAGCCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAG
TAGTAACAACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAAT
TGGGTTCAATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATT
AGGGACAAGCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCG
GACCGTGCTCAATGAGAAACAGCTGCATACGCTCAGAACCTGCTACAATG
CTAATCCGCGACCTGATGCGCTCATGAAAGAGCAGCTGGTGGAGATGACG
AGCCTGTCGC

BS01154.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10619-PA 1605 tup-RA 1..844 17..860 4195 99.8 Plus
CG10619-PB 1398 tup-RB 1..844 17..860 4195 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
tup-RC 2270 CG10619-RC 467..1310 17..860 4205 99.9 Plus
tup-RB 3314 CG10619-RB 467..1310 17..860 4205 99.9 Plus
tup-RA 3251 CG10619-RA 467..1310 17..860 4205 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18865468..18865659 347..156 960 100 Minus
2L 23513712 2L 18864095..18864285 665..475 955 100 Minus
2L 23513712 2L 18880657..18880795 155..17 695 100 Minus
2L 23513712 2L 18864392..18864525 477..344 670 100 Minus
2L 23513712 2L 18862180..18862303 786..663 620 100 Minus
2L 23513712 2L 18862045..18862122 860..783 375 98.7 Minus
Blast to na_te.dros performed 2015-02-11 17:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 2557..2604 58..104 120 75 Plus

BS01154.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:21 Download gff for BS01154.5prime
Subject Subject Range Query Range Percent Splice Strand
tup-PA 1..844 17..860 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:44 Download gff for BS01154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10619-PB 1..844 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:49:52 Download gff for BS01154.5prime
Subject Subject Range Query Range Percent Splice Strand
tup-RA 467..1310 17..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:36 Download gff for BS01154.5prime
Subject Subject Range Query Range Percent Splice Strand
tup-RA 467..1310 17..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:36 Download gff for BS01154.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18880657..18880795 17..155 100   Minus
2L 18864095..18864283 477..665 100 <- Minus
2L 18864393..18864523 346..476 100 <- Minus
2L 18865470..18865659 156..345 100 <- Minus
2L 18862045..18862118 787..860 98 <- Minus
2L 18862180..18862300 666..786 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:49:52 Download gff for BS01154.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18862045..18862118 787..860 98 <- Minus
arm_2L 18862180..18862300 666..786 100 <- Minus
arm_2L 18864095..18864283 477..665 100 <- Minus
arm_2L 18864393..18864523 346..476 100 <- Minus
arm_2L 18865470..18865659 156..345 100 <- Minus
arm_2L 18880657..18880795 17..155 100   Minus

BS01154.complete Sequence

1432 bp (1432 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634546

> BS01154.complete
GAAGTTATCAGTCGACATGGTAATGGCAGAGATTGGTGGCCATTTGGCTC
ACCAGCTACCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCA
TCGCTGGTGATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGT
GATAAAAAAACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCC
ACGATCAGTACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCG
TGTCTGAAGTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTG
TTTTGTGCGCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTAT
TTGGTACAAAATGTGATAAATGCGGCAACTCCTTCAGCAAAAATGATTTT
GTGATGCGGGCCAAAACGAAAATCTTTCACATCGAGTGCTTTCGATGCTC
CGCGTGTGCGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATG
CCGGGGCTTTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCG
CAGAGCAGCCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAG
TAGTAACAACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAAT
TGGGTTCAATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATT
AGGGACAAGCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCG
GACCGTGCTCAATGAGAAACAGCTGCATACGCTCAGAACCTGCTACAATG
CTAATCCGCGACCTGATGCGCTCATGAAGGAGCAGCTGGTGGAGATGACG
AGCCTGTCGCCGCGAGTCATCCGAGTATGGTTCCAGAACAAGCGCTGCAA
GGACAAGAAGAAGACCATTCAGATGAAGCTGCAAATGCAGCAGGAGAAGG
AGGGTCGCAAGCTGGGCTACGGCGCCATGCAGGGCATCCCCATGATCGCC
AGTTCCCCGGTGCGGCATGACTCCCCACTGAATCTTCAGGGCCTGGATGT
GCAGACATATCAACCGCCATGGAAAGCCTTAAGCGACTTCGCCCTTCACG
CCGATCTCGACAGCAATGGAGCGATCAATACCCACACGCCCGCATTTCAG
CAGTTGGTCAATCAGATGCACGGCTACGACCTGAACGGGATGCCCATTCT
GCCGCCGCATCCGCACTCGCATCCGGCGCAAGGACCTCCCCACCAGCACC
CCCCGCCCCCCGGCGGACCGCACAACCATCAGAACCAGCAGCCGAACCAG
CAGCCCGGAGGCAGCAGTTTGGACTCCGGGATCACCTCGCACCACCATCC
GGACAGCACCGACTCCTACGTCACCTACCTGGAGAGCGATGACAGTATGC
AGGGCAGTCCGTAGCGAAGCTTTCTAGACCAT

BS01154.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
tup-RB 1398 CG10619-PB 1..1398 17..1414 6990 100 Plus
tup-RC 1605 CG10619-PC 1..1378 17..1394 6890 100 Plus
tup-RA 1605 CG10619-PA 1..1378 17..1394 6890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
tup-RB 3314 CG10619-RB 467..1864 17..1414 6990 100 Plus
tup-RC 2270 CG10619-RC 467..1844 17..1394 6890 100 Plus
tup-RA 3251 CG10619-RA 467..1844 17..1394 6890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18860957..18861208 1414..1163 1260 100 Minus
2L 23513712 2L 18861682..18861899 1165..948 1090 100 Minus
2L 23513712 2L 18865468..18865659 347..156 960 100 Minus
2L 23513712 2L 18864095..18864285 665..475 955 100 Minus
2L 23513712 2L 18861955..18862122 950..783 840 100 Minus
2L 23513712 2L 18880657..18880795 155..17 695 100 Minus
2L 23513712 2L 18864392..18864525 477..344 670 100 Minus
2L 23513712 2L 18862180..18862303 786..663 620 100 Minus
Blast to na_te.dros performed 2014-11-28 07:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 2557..2604 58..104 120 75 Plus

BS01154.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:42 Download gff for BS01154.complete
Subject Subject Range Query Range Percent Splice Strand
tup-RB 1..1398 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:31 Download gff for BS01154.complete
Subject Subject Range Query Range Percent Splice Strand
tup-RB 462..1859 17..1416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:34 Download gff for BS01154.complete
Subject Subject Range Query Range Percent Splice Strand
tup-RB 467..1864 17..1416 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:42 Download gff for BS01154.complete
Subject Subject Range Query Range Percent Splice Strand
tup-RB 462..1863 17..1418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:20 Download gff for BS01154.complete
Subject Subject Range Query Range Percent Splice Strand
tup-RB 467..1864 17..1416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:20 Download gff for BS01154.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18880657..18880795 17..155 100   Minus
2L 18860954..18861205 1166..1416 99 <- Minus
2L 18861682..18861897 950..1165 100 <- Minus
2L 18861956..18862118 787..949 100 <- Minus
2L 18862180..18862300 666..786 100 <- Minus
2L 18864095..18864283 477..665 100 <- Minus
2L 18864393..18864523 346..476 100 <- Minus
2L 18865470..18865659 156..345 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:34 Download gff for BS01154.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18860954..18861205 1166..1416 99 <- Minus
arm_2L 18861682..18861897 950..1165 100 <- Minus
arm_2L 18861956..18862118 787..949 100 <- Minus
arm_2L 18862180..18862300 666..786 100 <- Minus
arm_2L 18864095..18864283 477..665 100 <- Minus
arm_2L 18864393..18864523 346..476 100 <- Minus
arm_2L 18865470..18865659 156..345 100 <- Minus
arm_2L 18880657..18880795 17..155 100   Minus

BS01154.pep Sequence

Translation from 16 to 1413

> BS01154.pep
MVMAEIGGHLAHQLPLHNHNHNQTGLQPSLVMNHHLDLDCHGHDVIKKQR
LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDG
KTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQ
LLPGDEFALRDAGALYCKEDHDVLEKSSQSSLTSSSVESNNNISSSNNNN
TNLSNNNHSSELGSMSDSGSESGSHKSIRDKRPSGPSDGKPTRVRTVLNE
KQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKT
IQMKLQMQQEKEGRKLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQTYQP
PWKALSDFALHADLDSNGAINTHTPAFQQLVNQMHGYDLNGMPILPPHPH
SHPAQGPPHQHPPPPGGPHNHQNQQPNQQPGGSSLDSGITSHHHPDSTDS
YVTYLESDDSMQGSP*

BS01154.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
tup-PB 465 CG10619-PB 1..465 1..465 2549 100 Plus
tup-PC 534 CG10619-PC 1..459 1..459 2518 100 Plus
tup-PA 534 CG10619-PA 1..459 1..459 2518 100 Plus
Lim1-PA 505 CG11354-PA 27..339 54..337 404 30.2 Plus
ap-PC 468 CG8376-PC 142..451 49..331 391 31.5 Plus