Clone Sequence Records
BS01154.3prime Sequence
807 bp (762 high quality bases) assembled on 2005-11-30
> BS01154.3prime
ATGGTCTAGAAAGCTTCGCTACGGACTGCCCTGCATACTGTCATCGCTCT
CCAGGTAGGTGACGTAGGAGTCGGTGCTGTCCGGATGGTGGTGCGAGGTG
ATCCCGGAGTCCAAACTGCTGCCTCCGGGCTGCTGGTTCGGCTGCTGGTT
CTGATGGTTGTGCGGTCCGCCGGGGGGCGGGGGGTGCTGGTGGGGAGGTC
CTTGCGCCGGATGCGAGTGCGGATGCGGCGGCAGAATGGGCATCCCGTTC
AGGTCGTAGCCGTGCATCTGATTGACCAACTGCTGAAATGCGGGCGTGTG
GGTATTGATCGCTCCATTGCTGTCGAGATCGGCGTGAAGGGCGAAGTCGC
TTAAGGCTTTCCATGGCGGTTGATATGTCTGCACATCCAGGCCCTGAAGA
TTCAGTGGGGAGTCATGCCGCACCGGGGAACTGGCGATCATGGGGATGCC
CTGCATGGCGCCGTAGCCCAGCTTGCGACCCTCCTTCTCCTGCTGCATTT
GCAGCTTCATCTGAATGGTCTTCTTCTTGTCCTTGCAGCGCTTGTTCTGG
AACCATACTCGGATGACTCGCGGCGACAGGCTCGTCATCTCCACCAGCTG
CTCCTTCATGAGCGCATCAGGTCGCGGATTAGCATTGTAGCAGGTTCTGA
GCGTATGCAGCTGTTTCTCATTGAGCACGGTCCGAACCCGCGTGGGCTTG
CCATCCGATGGCCCCGAGGGTCGCTTGTCCCTAATACTTTTGTGTGAGCC
CGATTCGCTGCCAGAATCTGACATTGAACCCCATTCGCTGGAATGGTTGT
TATTTGC
BS01154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10619-PB | 1398 | tup-RB | 613..1398 | 804..19 | 3905 | 99.8 | Minus |
CG10619-PA | 1605 | tup-RA | 613..1378 | 804..39 | 3805 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-RB | 3314 | CG10619-RB | 1079..1864 | 804..19 | 3915 | 99.9 | Minus |
tup-RC | 2270 | CG10619-RC | 1079..1844 | 804..39 | 3815 | 99.9 | Minus |
tup-RA | 3251 | CG10619-RA | 1079..1844 | 804..39 | 3815 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18860957..18861208 | 19..270 | 1260 | 100 | Plus |
2L | 23513712 | 2L | 18861682..18861899 | 268..485 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 18861955..18862122 | 483..650 | 840 | 100 | Plus |
2L | 23513712 | 2L | 18862180..18862303 | 647..770 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:20:32 has no hits.
BS01154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:20 Download gff for
BS01154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-PB | 611..1398 | 19..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:43 Download gff for
BS01154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10619-PB | 611..1398 | 19..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:40:27 Download gff for
BS01154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 1077..1868 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:38:33 Download gff for
BS01154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 1077..1868 | 15..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:38:33 Download gff for
BS01154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18860953..18861205 | 15..267 | 99 | <- | Plus |
2L | 18861682..18861897 | 268..483 | 100 | <- | Plus |
2L | 18861956..18862118 | 484..646 | 100 | <- | Plus |
2L | 18862180..18862300 | 647..767 | 100 | <- | Plus |
2L | 18864095..18864133 | 768..807 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:40:27 Download gff for
BS01154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18861956..18862118 | 484..646 | 100 | <- | Plus |
arm_2L | 18860953..18861205 | 15..267 | 99 | <- | Plus |
arm_2L | 18861682..18861897 | 268..483 | 100 | <- | Plus |
arm_2L | 18862180..18862300 | 647..767 | 100 | <- | Plus |
arm_2L | 18864095..18864133 | 768..807 | 95 | | Plus |
BS01154.5prime Sequence
860 bp (825 high quality bases) assembled on 2005-11-30
> BS01154.5prime
GAAGTTATCAGTCGACATGGTAATGGCAGAGATTGGTGGCCATTTGGCTC
ACCAGCTACCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCA
TCGCTGGTGATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGT
GATAAAAAAACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCC
ACGATCAGTACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCG
TGTCTGAAGTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTG
TTTTGTGCGCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTAT
TTGGTACAAAATGTGATAAATGCGGCAACTCCTTCAGCAAAAATGATTTT
GTGATGCGGGCCAAAACGAAAATCTTTCACATCGAGTGCTTTCGATGCTC
CGCGTGTGCGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATG
CCGGGGCTTTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCG
CAGAGCAGCCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAG
TAGTAACAACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAAT
TGGGTTCAATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATT
AGGGACAAGCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCG
GACCGTGCTCAATGAGAAACAGCTGCATACGCTCAGAACCTGCTACAATG
CTAATCCGCGACCTGATGCGCTCATGAAAGAGCAGCTGGTGGAGATGACG
AGCCTGTCGC
BS01154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10619-PA | 1605 | tup-RA | 1..844 | 17..860 | 4195 | 99.8 | Plus |
CG10619-PB | 1398 | tup-RB | 1..844 | 17..860 | 4195 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-RC | 2270 | CG10619-RC | 467..1310 | 17..860 | 4205 | 99.9 | Plus |
tup-RB | 3314 | CG10619-RB | 467..1310 | 17..860 | 4205 | 99.9 | Plus |
tup-RA | 3251 | CG10619-RA | 467..1310 | 17..860 | 4205 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18865468..18865659 | 347..156 | 960 | 100 | Minus |
2L | 23513712 | 2L | 18864095..18864285 | 665..475 | 955 | 100 | Minus |
2L | 23513712 | 2L | 18880657..18880795 | 155..17 | 695 | 100 | Minus |
2L | 23513712 | 2L | 18864392..18864525 | 477..344 | 670 | 100 | Minus |
2L | 23513712 | 2L | 18862180..18862303 | 786..663 | 620 | 100 | Minus |
2L | 23513712 | 2L | 18862045..18862122 | 860..783 | 375 | 98.7 | Minus |
Blast to na_te.dros performed 2015-02-11 17:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 2557..2604 | 58..104 | 120 | 75 | Plus |
BS01154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:21 Download gff for
BS01154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:09:44 Download gff for
BS01154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10619-PB | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:49:52 Download gff for
BS01154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RA | 467..1310 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:36 Download gff for
BS01154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RA | 467..1310 | 17..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:36 Download gff for
BS01154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18880657..18880795 | 17..155 | 100 | | Minus |
2L | 18864095..18864283 | 477..665 | 100 | <- | Minus |
2L | 18864393..18864523 | 346..476 | 100 | <- | Minus |
2L | 18865470..18865659 | 156..345 | 100 | <- | Minus |
2L | 18862045..18862118 | 787..860 | 98 | <- | Minus |
2L | 18862180..18862300 | 666..786 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:49:52 Download gff for
BS01154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18862045..18862118 | 787..860 | 98 | <- | Minus |
arm_2L | 18862180..18862300 | 666..786 | 100 | <- | Minus |
arm_2L | 18864095..18864283 | 477..665 | 100 | <- | Minus |
arm_2L | 18864393..18864523 | 346..476 | 100 | <- | Minus |
arm_2L | 18865470..18865659 | 156..345 | 100 | <- | Minus |
arm_2L | 18880657..18880795 | 17..155 | 100 | | Minus |
BS01154.complete Sequence
1432 bp (1432 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634546
> BS01154.complete
GAAGTTATCAGTCGACATGGTAATGGCAGAGATTGGTGGCCATTTGGCTC
ACCAGCTACCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCA
TCGCTGGTGATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGT
GATAAAAAAACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCC
ACGATCAGTACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCG
TGTCTGAAGTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTG
TTTTGTGCGCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTAT
TTGGTACAAAATGTGATAAATGCGGCAACTCCTTCAGCAAAAATGATTTT
GTGATGCGGGCCAAAACGAAAATCTTTCACATCGAGTGCTTTCGATGCTC
CGCGTGTGCGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATG
CCGGGGCTTTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCG
CAGAGCAGCCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAG
TAGTAACAACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAAT
TGGGTTCAATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATT
AGGGACAAGCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCG
GACCGTGCTCAATGAGAAACAGCTGCATACGCTCAGAACCTGCTACAATG
CTAATCCGCGACCTGATGCGCTCATGAAGGAGCAGCTGGTGGAGATGACG
AGCCTGTCGCCGCGAGTCATCCGAGTATGGTTCCAGAACAAGCGCTGCAA
GGACAAGAAGAAGACCATTCAGATGAAGCTGCAAATGCAGCAGGAGAAGG
AGGGTCGCAAGCTGGGCTACGGCGCCATGCAGGGCATCCCCATGATCGCC
AGTTCCCCGGTGCGGCATGACTCCCCACTGAATCTTCAGGGCCTGGATGT
GCAGACATATCAACCGCCATGGAAAGCCTTAAGCGACTTCGCCCTTCACG
CCGATCTCGACAGCAATGGAGCGATCAATACCCACACGCCCGCATTTCAG
CAGTTGGTCAATCAGATGCACGGCTACGACCTGAACGGGATGCCCATTCT
GCCGCCGCATCCGCACTCGCATCCGGCGCAAGGACCTCCCCACCAGCACC
CCCCGCCCCCCGGCGGACCGCACAACCATCAGAACCAGCAGCCGAACCAG
CAGCCCGGAGGCAGCAGTTTGGACTCCGGGATCACCTCGCACCACCATCC
GGACAGCACCGACTCCTACGTCACCTACCTGGAGAGCGATGACAGTATGC
AGGGCAGTCCGTAGCGAAGCTTTCTAGACCAT
BS01154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-RB | 1398 | CG10619-PB | 1..1398 | 17..1414 | 6990 | 100 | Plus |
tup-RC | 1605 | CG10619-PC | 1..1378 | 17..1394 | 6890 | 100 | Plus |
tup-RA | 1605 | CG10619-PA | 1..1378 | 17..1394 | 6890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-RB | 3314 | CG10619-RB | 467..1864 | 17..1414 | 6990 | 100 | Plus |
tup-RC | 2270 | CG10619-RC | 467..1844 | 17..1394 | 6890 | 100 | Plus |
tup-RA | 3251 | CG10619-RA | 467..1844 | 17..1394 | 6890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18860957..18861208 | 1414..1163 | 1260 | 100 | Minus |
2L | 23513712 | 2L | 18861682..18861899 | 1165..948 | 1090 | 100 | Minus |
2L | 23513712 | 2L | 18865468..18865659 | 347..156 | 960 | 100 | Minus |
2L | 23513712 | 2L | 18864095..18864285 | 665..475 | 955 | 100 | Minus |
2L | 23513712 | 2L | 18861955..18862122 | 950..783 | 840 | 100 | Minus |
2L | 23513712 | 2L | 18880657..18880795 | 155..17 | 695 | 100 | Minus |
2L | 23513712 | 2L | 18864392..18864525 | 477..344 | 670 | 100 | Minus |
2L | 23513712 | 2L | 18862180..18862303 | 786..663 | 620 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 07:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 2557..2604 | 58..104 | 120 | 75 | Plus |
BS01154.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:42 Download gff for
BS01154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 1..1398 | 17..1414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:31 Download gff for
BS01154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 462..1859 | 17..1416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:34 Download gff for
BS01154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 467..1864 | 17..1416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:42 Download gff for
BS01154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 462..1863 | 17..1418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:20 Download gff for
BS01154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 467..1864 | 17..1416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:20 Download gff for
BS01154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18880657..18880795 | 17..155 | 100 | | Minus |
2L | 18860954..18861205 | 1166..1416 | 99 | <- | Minus |
2L | 18861682..18861897 | 950..1165 | 100 | <- | Minus |
2L | 18861956..18862118 | 787..949 | 100 | <- | Minus |
2L | 18862180..18862300 | 666..786 | 100 | <- | Minus |
2L | 18864095..18864283 | 477..665 | 100 | <- | Minus |
2L | 18864393..18864523 | 346..476 | 100 | <- | Minus |
2L | 18865470..18865659 | 156..345 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:34 Download gff for
BS01154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18860954..18861205 | 1166..1416 | 99 | <- | Minus |
arm_2L | 18861682..18861897 | 950..1165 | 100 | <- | Minus |
arm_2L | 18861956..18862118 | 787..949 | 100 | <- | Minus |
arm_2L | 18862180..18862300 | 666..786 | 100 | <- | Minus |
arm_2L | 18864095..18864283 | 477..665 | 100 | <- | Minus |
arm_2L | 18864393..18864523 | 346..476 | 100 | <- | Minus |
arm_2L | 18865470..18865659 | 156..345 | 100 | <- | Minus |
arm_2L | 18880657..18880795 | 17..155 | 100 | | Minus |
BS01154.pep Sequence
Translation from 16 to 1413
> BS01154.pep
MVMAEIGGHLAHQLPLHNHNHNQTGLQPSLVMNHHLDLDCHGHDVIKKQR
LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDG
KTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQ
LLPGDEFALRDAGALYCKEDHDVLEKSSQSSLTSSSVESNNNISSSNNNN
TNLSNNNHSSELGSMSDSGSESGSHKSIRDKRPSGPSDGKPTRVRTVLNE
KQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKT
IQMKLQMQQEKEGRKLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQTYQP
PWKALSDFALHADLDSNGAINTHTPAFQQLVNQMHGYDLNGMPILPPHPH
SHPAQGPPHQHPPPPGGPHNHQNQQPNQQPGGSSLDSGITSHHHPDSTDS
YVTYLESDDSMQGSP*
BS01154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-PB | 465 | CG10619-PB | 1..465 | 1..465 | 2549 | 100 | Plus |
tup-PC | 534 | CG10619-PC | 1..459 | 1..459 | 2518 | 100 | Plus |
tup-PA | 534 | CG10619-PA | 1..459 | 1..459 | 2518 | 100 | Plus |
Lim1-PA | 505 | CG11354-PA | 27..339 | 54..337 | 404 | 30.2 | Plus |
ap-PC | 468 | CG8376-PC | 142..451 | 49..331 | 391 | 31.5 | Plus |