Clone BS01162 Report

Search the DGRC for BS01162

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:62
Vector:pDNR-Dual
Associated Gene/Transcripther-RA
Protein status:BS01162.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01162.3prime Sequence

936 bp (705 high quality bases) assembled on 2005-11-30

> BS01162.3prime
ATGGTCTAGAAAGCTTCGTCAAGTTTGACTTAACGTGCCCTGTTTAGAGT
ACATGTCCTTGATTATCTGCATGCGAGTCATTCGAGTCGCGCACAGCCAG
GAGTCCTTAATTTGAAATGCCTCGAACTGCTTGCGATCTTCCTTGAAGGG
TTTGTAGTAAATGTCATAGATGATGCGCAGGATGCGTTGCACATTCTCCT
GCGACGGCTTCTTTGAGTGCTTTGCAAATGTTTGGTTCTTTTGCATCTTT
GTGTACTTGCCATCATCCCACCAATCTGGAAAATCTGTATCTGCATCGCC
AGCTTTAAGGTCCTTCTTGAGTTCCGCTTTGGGACTTATGTGATGTACAG
CATCCGGCGTACTCCAACTCCAAGCCAGATCGGTCAGCGATGATTGTTTT
ATTTTAACTGGTTCCTCTCCGCTCAGCATTGGCACAAGAAACTCATCCTG
CTGATCTTCTTCGGCAAGGGACATGGCCAACTCATCGTCTAATTCGTCCA
TTTGCTGCTGGACAGAAATTGAAGTGCTCTTTATGGGCAGCTCCAATTTT
GTTGGAGCTCCCGGCGGTGGATCTATTGACTGGAACCATCGCAACTGGCC
ATCAACGTTGACAGCGATGACGTGCTTATCCCGGATGTCTCCATGGAGAA
TCTGCGGGTTGCTAATGGTGATGATGGGCGGCTGCTCCTCCTCCTGCAGT
TCCTCGTAAACAAATTCCAAACTTTCCTCGTCGTATTTCATACTGCCTAC
CAGGGCTTCTTTTAAAGGAATATTTCCGTGCTCCAGCTGCTTATTCAGCA
CAGGACTCTGGTCCTCCCCAGCACTGTCTTTCTTTTTGCCTTGTTTCNGN
TGCTGATCCCTCAGCATTTGCACCTTCTGCTTTTGGTCCTTCACTTTAGA
TTCTTCAAATCCCTGTTCTCTGTGATCTGATATTTT

BS01162.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4694-PA 1464 her-RA 666..1464 817..19 3995 100 Minus
CG4694-PA 1464 her-RA 590..642 893..841 227 96.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
her-RB 2378 CG4694-RB 744..1662 936..19 4378 98.8 Minus
her-RA 2070 CG4694-RA 744..1662 936..19 4378 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16678643..16678975 351..19 1665 100 Minus
2L 23513712 2L 16678318..16678582 615..351 1325 100 Minus
2L 23513712 2L 16677928..16678250 936..615 1318 94.4 Minus
Blast to na_te.dros performed on 2015-02-09 02:32:36 has no hits.

BS01162.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:35 Download gff for BS01162.3prime
Subject Subject Range Query Range Percent Splice Strand
her-PA 708..724 359..375 94   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:06 Download gff for BS01162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4694-PA 546..1464 19..936 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:06:03 Download gff for BS01162.3prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 744..1665 16..936 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:17:04 Download gff for BS01162.3prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 744..1665 16..936 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:17:04 Download gff for BS01162.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16677928..16678249 616..936 96 -> Minus
2L 16678318..16678581 352..615 100 -> Minus
2L 16678643..16678978 16..351 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:06:03 Download gff for BS01162.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16677928..16678249 616..936 96 -> Minus
arm_2L 16678318..16678581 352..615 100 -> Minus
arm_2L 16678643..16678978 16..351 99   Minus

BS01162.5prime Sequence

845 bp (791 high quality bases) assembled on 2005-11-30

> BS01162.5prime
GAAGTTATCAGTCGACATGCTTAGTGCGGATCGGGATTCGGTGGAGGAAG
AATATGGATCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGC
CCCTACAGGACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCA
CATTGGTATTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACA
ACACCGACAAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCT
GGGTGCAAAAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAA
GTTGCAGTGCCTGGTGATGGGATGCAGATACGAGACAAATCGTCCATACG
ACCTCAAGCGCCACTTGATGGTGCACAACAATCCGGAGAAGAGCCACAGG
ACGTTTAAGTGCTCCCTTTGCACCTACAGCTCCGACCGAAAGGCCAATCT
CAAGCGGCACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAA
CTGCGGAGGAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAG
GAACATAAGCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCT
AAAGTTGAAGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAAC
CGAAACAAAGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTG
CTGAATAAGCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGT
AGGCAGTATGAAATACGACGAGGAAAGTTTGGAATTTGTTTACGAGGAAC
TGCANGAGGAGGAGCAGCCGCCCATCATCACCATTTAGCACCCGC

BS01162.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4694-PA 1464 her-RA 1..819 17..835 4076 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
her-RB 2378 CG4694-RB 199..1027 17..845 4089 99.6 Plus
her-RA 2070 CG4694-RA 199..1027 17..845 4089 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16677383..16678201 17..835 4084 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 11:39:10 has no hits.

BS01162.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:02:36 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:07 Download gff for BS01162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4694-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:18:42 Download gff for BS01162.5prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 199..1027 17..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:38 Download gff for BS01162.5prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 199..1027 17..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:38 Download gff for BS01162.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16677383..16678211 17..845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:18:42 Download gff for BS01162.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16677383..16678211 17..845 99   Plus

BS01162.complete Sequence

1498 bp (1498 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634550

> BS01162.complete
GAAGTTATCAGTCGACATGCTTAGTGCGGATCGGGATTCGGTGGAGGAAG
AATATGGATCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGC
CCCTACAGGACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCA
CATTGGTATTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACA
ACACCGACAAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCT
GGGTGCAAAAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAA
GTTGCAGTGCCTGGTGATGGGATGCAGATACGAGACAAATCGTCCATACG
ACCTCAAGCGCCACTTGATGGTGCACAACAATCCGGAGAAGAGCCACAGG
ACGTTTAAGTGCTCCCTTTGCACCTACAGCTCCGACCGAAAGGCCAATCT
CAAGCGGCACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAA
CTGCGGAGGAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAG
GAACATAAGCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCT
AAAGTTGAAGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAAC
CGAAACAAAGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTG
CTGAATAAGCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGT
AGGCAGTATGAAATACGACGAGGAAAGTTTGGAATTTGTTTACGAGGAAC
TGCAGGAGGAGGAGCAGCCGCCCATCATCACCATTAGCAACCCGCAGATT
CTCCATGGAGACATCCGGGATAAGCACGTCATCGCTGTCAACGTTGATGG
CCAGTTGCGATGGTTCCAGTCAATAGATCCACCGCCGGGAGCTCCAACAA
AATTGGAGCTGCCCATAAAGAGCACTTCAATTTCTGTCCAGCAGCAAATG
GACGAATTAGACGATGAGTTGGCCATGTCCCTTGCCGAAGAAGATCAGCA
GGATGAGTTTCTTGTGCCAATGCTGAGCGGAGAGGAACCAGTTAAAATAA
AACAATCATCGCTGACCGATCTGGCTTGGAGTTGGAGTACGCCGGATGCT
GTACATCACATAAGTCCCAAAGCGGAACTCAAGAAGGACCTTAAAGCTGG
CGATGCAGATACAGATTTTCCAGATTGGTGGGATGATGGCAAGTACACAA
AGATGCAAAAGAACCAAACATTTGCAAAGCACTCAAAGAAGCCGTCGCAG
GAGAATGTGCAACGCATCCTGCGCATCATCTATGACATTTACTACAAACC
CTTCAAGGAAGATCGCAAGCAGTTCGAGGCATTTCAAATTAAGGACTCCT
GGCTGTGCGCGACTCGAATGACTCGCATGCAGATAATCAAGGACATGTAC
TCTAAACAGGGCACGTTAAGTCAAACTTGACGAAGCTTTCTAGACCAT

BS01162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
her-RB 1464 CG4694-PB 1..1464 17..1480 7320 100 Plus
her-RA 1464 CG4694-PA 1..1464 17..1480 7320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
her-RB 2378 CG4694-RB 199..1662 17..1480 7320 100 Plus
her-RA 2070 CG4694-RA 199..1662 17..1480 7320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16677383..16678250 17..884 4340 100 Plus
2L 23513712 2L 16678643..16678975 1148..1480 1665 100 Plus
2L 23513712 2L 16678318..16678582 884..1148 1325 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:02:41 has no hits.

BS01162.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:45 Download gff for BS01162.complete
Subject Subject Range Query Range Percent Splice Strand
her-RA 1..1464 17..1480 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:50 Download gff for BS01162.complete
Subject Subject Range Query Range Percent Splice Strand
her-RA 174..1640 17..1483 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:39 Download gff for BS01162.complete
Subject Subject Range Query Range Percent Splice Strand
her-RA 199..1664 17..1482 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:45 Download gff for BS01162.complete
Subject Subject Range Query Range Percent Splice Strand
her-RA 174..1640 17..1483 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:14 Download gff for BS01162.complete
Subject Subject Range Query Range Percent Splice Strand
her-RA 199..1664 17..1482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:14 Download gff for BS01162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16677383..16678249 17..883 100 -> Plus
2L 16678318..16678581 884..1147 100 -> Plus
2L 16678643..16678977 1148..1482 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:39 Download gff for BS01162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16677383..16678249 17..883 100 -> Plus
arm_2L 16678318..16678581 884..1147 100 -> Plus
arm_2L 16678643..16678977 1148..1482 99   Plus

BS01162.pep Sequence

Translation from 16 to 1479

> BS01162.pep
MLSADRDSVEEEYGSCSAWKFRCSVDRCPYRTNRPYNLARHEESHIGITQ
SKLYGCPVCVYNTDKASNLKRHVSIKHPGCKKRPPEAQHKDRNAKLQCLV
MGCRYETNRPYDLKRHLMVHNNPEKSHRTFKCSLCTYSSDRKANLKRHHE
LRHSGIEEAIQTAEELRQEMLLEKQMLKEHKLKYQITEKQDLKNLKLKDQ
KQKVQMLRDQQPKQRQKKEQLLEDQSPVLNKQLEHGNIPLKEALVGSMKY
DEESLEFVYEELQEEEQPPIITISNPQILHGDIRDKHVIAVNVDGQLRWF
QSIDPPPGAPTKLELPIKSTSISVQQQMDELDDELAMSLAEEDQQDEFLV
PMLSGEEPVKIKQSSLTDLAWSWSTPDAVHHISPKAELKKDLKAGDADTD
FPDWWDDGKYTKMQKNQTFAKHSKKPSQENVQRILRIIYDIYYKPFKEDR
KQFEAFQIKDSWLCATRMTRMQIIKDMYSKQGTLSQT*

BS01162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
her-PB 487 CG4694-PB 1..487 1..487 2590 100 Plus
her-PA 487 CG4694-PA 1..487 1..487 2590 100 Plus