Clone Sequence Records
BS01162.3prime Sequence
936 bp (705 high quality bases) assembled on 2005-11-30
> BS01162.3prime
ATGGTCTAGAAAGCTTCGTCAAGTTTGACTTAACGTGCCCTGTTTAGAGT
ACATGTCCTTGATTATCTGCATGCGAGTCATTCGAGTCGCGCACAGCCAG
GAGTCCTTAATTTGAAATGCCTCGAACTGCTTGCGATCTTCCTTGAAGGG
TTTGTAGTAAATGTCATAGATGATGCGCAGGATGCGTTGCACATTCTCCT
GCGACGGCTTCTTTGAGTGCTTTGCAAATGTTTGGTTCTTTTGCATCTTT
GTGTACTTGCCATCATCCCACCAATCTGGAAAATCTGTATCTGCATCGCC
AGCTTTAAGGTCCTTCTTGAGTTCCGCTTTGGGACTTATGTGATGTACAG
CATCCGGCGTACTCCAACTCCAAGCCAGATCGGTCAGCGATGATTGTTTT
ATTTTAACTGGTTCCTCTCCGCTCAGCATTGGCACAAGAAACTCATCCTG
CTGATCTTCTTCGGCAAGGGACATGGCCAACTCATCGTCTAATTCGTCCA
TTTGCTGCTGGACAGAAATTGAAGTGCTCTTTATGGGCAGCTCCAATTTT
GTTGGAGCTCCCGGCGGTGGATCTATTGACTGGAACCATCGCAACTGGCC
ATCAACGTTGACAGCGATGACGTGCTTATCCCGGATGTCTCCATGGAGAA
TCTGCGGGTTGCTAATGGTGATGATGGGCGGCTGCTCCTCCTCCTGCAGT
TCCTCGTAAACAAATTCCAAACTTTCCTCGTCGTATTTCATACTGCCTAC
CAGGGCTTCTTTTAAAGGAATATTTCCGTGCTCCAGCTGCTTATTCAGCA
CAGGACTCTGGTCCTCCCCAGCACTGTCTTTCTTTTTGCCTTGTTTCNGN
TGCTGATCCCTCAGCATTTGCACCTTCTGCTTTTGGTCCTTCACTTTAGA
TTCTTCAAATCCCTGTTCTCTGTGATCTGATATTTT
BS01162.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4694-PA | 1464 | her-RA | 666..1464 | 817..19 | 3995 | 100 | Minus |
CG4694-PA | 1464 | her-RA | 590..642 | 893..841 | 227 | 96.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-RB | 2378 | CG4694-RB | 744..1662 | 936..19 | 4378 | 98.8 | Minus |
her-RA | 2070 | CG4694-RA | 744..1662 | 936..19 | 4378 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16678643..16678975 | 351..19 | 1665 | 100 | Minus |
2L | 23513712 | 2L | 16678318..16678582 | 615..351 | 1325 | 100 | Minus |
2L | 23513712 | 2L | 16677928..16678250 | 936..615 | 1318 | 94.4 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:32:36 has no hits.
BS01162.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:35 Download gff for
BS01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-PA | 708..724 | 359..375 | 94 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:06 Download gff for
BS01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4694-PA | 546..1464 | 19..936 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:06:03 Download gff for
BS01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 744..1665 | 16..936 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:17:04 Download gff for
BS01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 744..1665 | 16..936 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:17:04 Download gff for
BS01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16677928..16678249 | 616..936 | 96 | -> | Minus |
2L | 16678318..16678581 | 352..615 | 100 | -> | Minus |
2L | 16678643..16678978 | 16..351 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:06:03 Download gff for
BS01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16677928..16678249 | 616..936 | 96 | -> | Minus |
arm_2L | 16678318..16678581 | 352..615 | 100 | -> | Minus |
arm_2L | 16678643..16678978 | 16..351 | 99 | | Minus |
BS01162.5prime Sequence
845 bp (791 high quality bases) assembled on 2005-11-30
> BS01162.5prime
GAAGTTATCAGTCGACATGCTTAGTGCGGATCGGGATTCGGTGGAGGAAG
AATATGGATCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGC
CCCTACAGGACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCA
CATTGGTATTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACA
ACACCGACAAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCT
GGGTGCAAAAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAA
GTTGCAGTGCCTGGTGATGGGATGCAGATACGAGACAAATCGTCCATACG
ACCTCAAGCGCCACTTGATGGTGCACAACAATCCGGAGAAGAGCCACAGG
ACGTTTAAGTGCTCCCTTTGCACCTACAGCTCCGACCGAAAGGCCAATCT
CAAGCGGCACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAA
CTGCGGAGGAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAG
GAACATAAGCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCT
AAAGTTGAAGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAAC
CGAAACAAAGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTG
CTGAATAAGCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGT
AGGCAGTATGAAATACGACGAGGAAAGTTTGGAATTTGTTTACGAGGAAC
TGCANGAGGAGGAGCAGCCGCCCATCATCACCATTTAGCACCCGC
BS01162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4694-PA | 1464 | her-RA | 1..819 | 17..835 | 4076 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-RB | 2378 | CG4694-RB | 199..1027 | 17..845 | 4089 | 99.6 | Plus |
her-RA | 2070 | CG4694-RA | 199..1027 | 17..845 | 4089 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16677383..16678201 | 17..835 | 4084 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:39:10 has no hits.
BS01162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:02:36 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:07 Download gff for
BS01162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4694-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:18:42 Download gff for
BS01162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 199..1027 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:38 Download gff for
BS01162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 199..1027 | 17..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:38 Download gff for
BS01162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16677383..16678211 | 17..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:18:42 Download gff for
BS01162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16677383..16678211 | 17..845 | 99 | | Plus |
BS01162.complete Sequence
1498 bp (1498 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634550
> BS01162.complete
GAAGTTATCAGTCGACATGCTTAGTGCGGATCGGGATTCGGTGGAGGAAG
AATATGGATCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGC
CCCTACAGGACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCA
CATTGGTATTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACA
ACACCGACAAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCT
GGGTGCAAAAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAA
GTTGCAGTGCCTGGTGATGGGATGCAGATACGAGACAAATCGTCCATACG
ACCTCAAGCGCCACTTGATGGTGCACAACAATCCGGAGAAGAGCCACAGG
ACGTTTAAGTGCTCCCTTTGCACCTACAGCTCCGACCGAAAGGCCAATCT
CAAGCGGCACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAA
CTGCGGAGGAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAG
GAACATAAGCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCT
AAAGTTGAAGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAAC
CGAAACAAAGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTG
CTGAATAAGCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGT
AGGCAGTATGAAATACGACGAGGAAAGTTTGGAATTTGTTTACGAGGAAC
TGCAGGAGGAGGAGCAGCCGCCCATCATCACCATTAGCAACCCGCAGATT
CTCCATGGAGACATCCGGGATAAGCACGTCATCGCTGTCAACGTTGATGG
CCAGTTGCGATGGTTCCAGTCAATAGATCCACCGCCGGGAGCTCCAACAA
AATTGGAGCTGCCCATAAAGAGCACTTCAATTTCTGTCCAGCAGCAAATG
GACGAATTAGACGATGAGTTGGCCATGTCCCTTGCCGAAGAAGATCAGCA
GGATGAGTTTCTTGTGCCAATGCTGAGCGGAGAGGAACCAGTTAAAATAA
AACAATCATCGCTGACCGATCTGGCTTGGAGTTGGAGTACGCCGGATGCT
GTACATCACATAAGTCCCAAAGCGGAACTCAAGAAGGACCTTAAAGCTGG
CGATGCAGATACAGATTTTCCAGATTGGTGGGATGATGGCAAGTACACAA
AGATGCAAAAGAACCAAACATTTGCAAAGCACTCAAAGAAGCCGTCGCAG
GAGAATGTGCAACGCATCCTGCGCATCATCTATGACATTTACTACAAACC
CTTCAAGGAAGATCGCAAGCAGTTCGAGGCATTTCAAATTAAGGACTCCT
GGCTGTGCGCGACTCGAATGACTCGCATGCAGATAATCAAGGACATGTAC
TCTAAACAGGGCACGTTAAGTCAAACTTGACGAAGCTTTCTAGACCAT
BS01162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-RB | 1464 | CG4694-PB | 1..1464 | 17..1480 | 7320 | 100 | Plus |
her-RA | 1464 | CG4694-PA | 1..1464 | 17..1480 | 7320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-RB | 2378 | CG4694-RB | 199..1662 | 17..1480 | 7320 | 100 | Plus |
her-RA | 2070 | CG4694-RA | 199..1662 | 17..1480 | 7320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16677383..16678250 | 17..884 | 4340 | 100 | Plus |
2L | 23513712 | 2L | 16678643..16678975 | 1148..1480 | 1665 | 100 | Plus |
2L | 23513712 | 2L | 16678318..16678582 | 884..1148 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:02:41 has no hits.
BS01162.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:45 Download gff for
BS01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 1..1464 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:50 Download gff for
BS01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 174..1640 | 17..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:39 Download gff for
BS01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 199..1664 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:45 Download gff for
BS01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 174..1640 | 17..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:14 Download gff for
BS01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 199..1664 | 17..1482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:14 Download gff for
BS01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16677383..16678249 | 17..883 | 100 | -> | Plus |
2L | 16678318..16678581 | 884..1147 | 100 | -> | Plus |
2L | 16678643..16678977 | 1148..1482 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:39 Download gff for
BS01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16677383..16678249 | 17..883 | 100 | -> | Plus |
arm_2L | 16678318..16678581 | 884..1147 | 100 | -> | Plus |
arm_2L | 16678643..16678977 | 1148..1482 | 99 | | Plus |
BS01162.pep Sequence
Translation from 16 to 1479
> BS01162.pep
MLSADRDSVEEEYGSCSAWKFRCSVDRCPYRTNRPYNLARHEESHIGITQ
SKLYGCPVCVYNTDKASNLKRHVSIKHPGCKKRPPEAQHKDRNAKLQCLV
MGCRYETNRPYDLKRHLMVHNNPEKSHRTFKCSLCTYSSDRKANLKRHHE
LRHSGIEEAIQTAEELRQEMLLEKQMLKEHKLKYQITEKQDLKNLKLKDQ
KQKVQMLRDQQPKQRQKKEQLLEDQSPVLNKQLEHGNIPLKEALVGSMKY
DEESLEFVYEELQEEEQPPIITISNPQILHGDIRDKHVIAVNVDGQLRWF
QSIDPPPGAPTKLELPIKSTSISVQQQMDELDDELAMSLAEEDQQDEFLV
PMLSGEEPVKIKQSSLTDLAWSWSTPDAVHHISPKAELKKDLKAGDADTD
FPDWWDDGKYTKMQKNQTFAKHSKKPSQENVQRILRIIYDIYYKPFKEDR
KQFEAFQIKDSWLCATRMTRMQIIKDMYSKQGTLSQT*
BS01162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-PB | 487 | CG4694-PB | 1..487 | 1..487 | 2590 | 100 | Plus |
her-PA | 487 | CG4694-PA | 1..487 | 1..487 | 2590 | 100 | Plus |