Clone Sequence Records
BS01163.3prime Sequence
898 bp (760 high quality bases) assembled on 2005-11-30
> BS01163.3prime
ATGGTCTAGAAAGCTTCGCTAATTGAAGCAGTAGGCAAACTGCGAGTTGC
CCGCGGCGTTCCGATGGGGATTATACGCTTGCATTATCGTATCCATCGTG
CATTGATATTGGTTCGATTCGCCCATGGCCACGCCCCCCATTCCGAGGGG
CGGCTGAGGGCCTTGTGGGGGCGAAGGCTTGCCAAATTTGGCAAATGCCG
CTCCACGATTTCCGGTTCCTGCTAAGGCTCTTATTCCGGTGCTCATGTCG
TCGCTACTGCCATCGTCGCAGCTCTTGTCCAGACCCTTCAAAGGCTCCAA
GATCTGTAGCGTCGTCTTCTTGCTCGTTCCGTCGTCCATGTCGTCGGCCG
CCTCCGTCTCGCCAACGGCGATGGCGCAAGGTCCGCCGATGCCGATGCCA
CACAGACTCGGACTTTCGTCATTCTTGGGTGTTAATGGCTCGTAGACCTC
GGAGCCCGGCGAGGCAGCGCCTCGGGCCACAGCGGATGCCGATGCAGTGG
CGCCAGACATTCCCGATCGCATGTAGTACGAGCTGTTGAAGTTGTAGTCG
GCCTCCGGTTCGTCCTTGACCAGGACGCGACAGGCGCTGGCTTGCTTTTG
CTGGAAGTCAAAGTGATGGTATTGCTGCTGCTGAGCCTGCTGTTGCTGCT
GCTGCATCTGGTGCGGCACGTGGTTGCCCTGGTGGTGCAGTTGCTGCTGG
TGATTATGGACCTGCTGCTGCTGGAAGAACTGGCCGCCATTGACATTGGT
CGACCCAGGTCCTGGCCCCCCTCCGGAAGGATACTGCATGTGCATGTGAC
GATTGGCCTGGGCGTGATTGTGGCCTCCATTTGTAGTGTAGTAGGCGTTG
AATGACTCGCTGTAGTGCTCCGTCATGTGTGCAGTGGGCGTTGAGGGC
BS01163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1034-PD | 1470 | bcd-RD | 658..1470 | 831..19 | 4065 | 100 | Minus |
| CG1034-PE | 1257 | bcd-RE | 445..1257 | 831..19 | 4065 | 100 | Minus |
| CG1034-PF | 1242 | bcd-RF | 430..1242 | 831..19 | 4065 | 100 | Minus |
| CG1034-PG | 1485 | bcd-RG | 673..1485 | 831..19 | 4065 | 100 | Minus |
| CG1034-PA | 450 | bcd-RA | 165..450 | 304..19 | 1430 | 100 | Minus |
| CG1034-PD | 1470 | bcd-RD | 591..652 | 898..837 | 310 | 100 | Minus |
| CG1034-PE | 1257 | bcd-RE | 378..439 | 898..837 | 310 | 100 | Minus |
| CG1034-PF | 1242 | bcd-RF | 363..424 | 898..837 | 310 | 100 | Minus |
| CG1034-PG | 1485 | bcd-RG | 606..667 | 898..837 | 310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RG | 2514 | CG1034-RG | 801..1681 | 898..18 | 4360 | 99.8 | Minus |
| bcd-RF | 2521 | CG1034-RF | 808..1688 | 898..18 | 4360 | 99.8 | Minus |
| bcd-RE | 2536 | CG1034-RE | 823..1703 | 898..18 | 4360 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757473..6758067 | 304..898 | 2900 | 99.2 | Plus |
| 3R | 32079331 | 3R | 6756675..6756962 | 18..305 | 1440 | 100 | Plus |
| 3L | 28110227 | 3L | 27541341..27541647 | 898..592 | 1415 | 97.4 | Minus |
| 3L | 28110227 | 3L | 27850430..27850736 | 898..592 | 1415 | 97.4 | Minus |
Blast to na_te.dros performed 2015-02-12 13:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..7013 | 723..526 | 279 | 63.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6849 | 723..614 | 233 | 69.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6888 | 723..614 | 233 | 69.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6921 | 723..593 | 227 | 66.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6892 | 723..592 | 225 | 68.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1200 | 748..593 | 197 | 62.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2473 | 723..614 | 183 | 64.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2529 | 723..532 | 182 | 60.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2533 | 723..599 | 166 | 59.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6977 | 723..591 | 160 | 61.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2840..2947 | 724..614 | 151 | 62.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2581 | 723..589 | 146 | 60.3 | Minus |
BS01163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:37 Download gff for
BS01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-PD | 591..1470 | 19..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:08 Download gff for
BS01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1034-PF | 363..1242 | 19..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:55 Download gff for
BS01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RE | 823..1703 | 18..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:01:14 Download gff for
BS01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RE | 823..1703 | 18..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:01:14 Download gff for
BS01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6756675..6756960 | 18..303 | 100 | <- | Plus |
| 3R | 6757473..6758067 | 304..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:55 Download gff for
BS01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2582397..2582682 | 18..303 | 100 | <- | Plus |
| arm_3R | 2583195..2583789 | 304..898 | 99 | | Plus |
BS01163.5prime Sequence
917 bp (745 high quality bases) assembled on 2005-11-30
> BS01163.5prime
GAAGTTATCAGTCGACATGGCGCAACCGCCGCCAGATCAAAACTTTTACC
ATCATCCGCTGCCCCACACGCACACACATCCGCATCCGCACTCCCATCCG
CATCCGCACTCGCATCCGCACCCACATCACCAACATCCGCAGCTTCAGTT
GCCGCCACAATTCCGAAATCCCTTCGATTTGCTTTTCGATGAGCGAACGG
GAGCGATAAACTACAACTACATACGTCCGTATCTGCCCAACCAGATGCCC
AAGCCAGAGGAGCTGCCCGACTCTCTGGTGATGCGGCGACCACGTCGCAC
CCGCACCACTTTTACCAGCTCTCAAATAGCAGAGCTGGAGCAGCACTTTC
TGCAGGGACGATACCTCACAGCCCCCCGACTTGCGGATCTGTCAGCGAAA
CTAGCCCTGGGCACAGCCCAGGTGAAGATATGGTTTAAGAACCGTCGGCG
TCGTCACAAGATCCAATCGGATCAGCACAAGGACCAGTCCTACGAGGGGA
TGCCTCTCTCGCCGGGTATGAAACAGAGCGATGGCGATCCCCCCAGCTTG
CAGACTCTTAGCTTGGGTGGAGGAGCCACGCCCAACGCTTTGACTCCGTC
ACCCACGCCCTCAACGCCCACTGCACACATGACGGAGCACTACAGCGAGT
CATTCAACGCCTACTACAACTACAATGGAGGCCACAATCACGCCCAGGCC
AATCGTCACATGCACATGCAGTATCCTTCCGGAGGGGGGCCAGGACCTGG
GTCGACCAATGTCAATGGCGGCCAGTTCTTCCAGCAGCAGCAGGTCCATA
ATCACCAGCAGCAACTGCACCACCAGGGCAACCACGTGCCGCACCAGATG
CAGCAGCAGCAACAGCAGGCTCAGCAGCAGCAATACCATCACTTTGACTT
CCAGCAAAAGCAAGCCA
BS01163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1034-PD | 1470 | bcd-RD | 1..901 | 17..917 | 4505 | 100 | Plus |
| CG1034-PF | 1242 | bcd-RF | 1..673 | 245..917 | 3365 | 100 | Plus |
| CG1034-PG | 1485 | bcd-RG | 254..916 | 255..917 | 3315 | 100 | Plus |
| CG1034-PE | 1257 | bcd-RE | 26..688 | 255..917 | 3315 | 100 | Plus |
| CG1034-PG | 1485 | bcd-RG | 1..242 | 17..258 | 1210 | 100 | Plus |
| CG1034-PA | 450 | bcd-RA | 1..165 | 17..181 | 825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RD | 2499 | CG1034-RD | 196..1096 | 17..917 | 4505 | 100 | Plus |
| bcd-RG | 2514 | CG1034-RG | 196..1111 | 17..917 | 4345 | 98.4 | Plus |
| bcd-RF | 2521 | CG1034-RF | 196..1118 | 17..917 | 4275 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757757..6758419 | 917..255 | 3315 | 100 | Minus |
| 3L | 28110227 | 3L | 27540989..27541647 | 255..913 | 3235 | 99.4 | Plus |
| 3L | 28110227 | 3L | 27850078..27850736 | 255..913 | 3235 | 99.4 | Plus |
| 3R | 32079331 | 3R | 6759107..6759271 | 181..17 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 27540137..27540298 | 17..178 | 780 | 98.8 | Plus |
| 3L | 28110227 | 3L | 27849226..27849387 | 17..178 | 780 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6758465..6758548 | 264..181 | 390 | 97.6 | Minus |
| 3L | 28110227 | 3L | 27540860..27540943 | 181..264 | 390 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27849949..27850032 | 181..264 | 390 | 97.6 | Plus |
Blast to na_te.dros performed 2015-02-12 06:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..6946 | 782..913 | 245 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6849 | 782..891 | 233 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6888 | 782..891 | 233 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6921 | 782..912 | 227 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6892 | 782..913 | 225 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1200 | 757..912 | 197 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2473 | 782..891 | 183 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2471 | 782..913 | 175 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2533 | 782..906 | 166 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6977 | 782..914 | 160 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2840..2947 | 781..891 | 151 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2581 | 782..916 | 146 | 60.3 | Plus |
BS01163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:38 Download gff for
BS01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-PD | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:09 Download gff for
BS01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1034-PD | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:33:46 Download gff for
BS01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1095 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:23 Download gff for
BS01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1095 | 17..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:23 Download gff for
BS01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6759107..6759271 | 17..181 | 100 | | Minus |
| 3R | 6757758..6758416 | 258..916 | 100 | <- | Minus |
| 3R | 6758472..6758547 | 182..257 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:33:46 Download gff for
BS01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2583480..2584138 | 258..916 | 100 | <- | Minus |
| arm_3R | 2584194..2584269 | 182..257 | 100 | <- | Minus |
| arm_3R | 2584829..2584993 | 17..181 | 100 | | Minus |
BS01163.complete Sequence
1504 bp (1504 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634551
> BS01163.complete
GAAGTTATCAGTCGACATGGCGCAACCGCCGCCAGATCAAAACTTTTACC
ATCATCCGCTGCCCCACACGCACACACATCCGCATCCGCACTCCCATCCG
CATCCGCACTCGCATCCGCACCCACATCACCAACATCCGCAGCTTCAGTT
GCCGCCACAATTCCGAAATCCCTTCGATTTGCTTTTCGATGAGCGAACGG
GAGCGATAAACTACAACTACATACGTCCGTATCTGCCCAACCAGATGCCC
AAGCCAGAGGAGCTGCCCGACTCTCTGGTGATGCGGCGACCACGTCGCAC
CCGCACCACTTTTACCAGCTCTCAAATAGCAGAGCTGGAGCAGCACTTTC
TGCAGGGACGATACCTCACAGCCCCCCGACTTGCGGATCTGTCAGCGAAA
CTAGCCCTGGGCACAGCCCAGGTGAAGATATGGTTTAAGAACCGTCGGCG
TCGTCACAAGATCCAATCGGATCAGCACAAGGACCAGTCCTACGAGGGGA
TGCCTCTCTCGCCGGGTATGAAACAGAGCGATGGCGATCCCCCCAGCTTG
CAGACTCTTAGCTTGGGTGGAGGAGCCACGCCCAACGCTTTGACTCCGTC
ACCCACGCCCTCAACGCCCACTGCACACATGACGGAGCACTACAGCGAGT
CATTCAACGCCTACTACAACTACAATGGAGGCCACAATCACGCCCAGGCC
AATCGTCACATGCACATGCAGTATCCTTCCGGAGGGGGGCCAGGACCTGG
GTCGACCAATGTCAATGGCGGCCAGTTCTTCCAGCAGCAGCAGGTCCATA
ATCACCAGCAGCAACTGCACCACCAGGGCAACCACGTGCCGCACCAGATG
CAGCAGCAGCAACAGCAGGCTCAGCAGCAGCAATACCATCACTTTGACTT
CCAGCAAAAGCAAGCCAGCGCCTGTCGCGTCCTGGTCAAGGACGAACCGG
AGGCCGACTACAACTTCAACAGCTCGTACTACATGCGATCGGGAATGTCT
GGCGCCACTGCATCGGCATCCGCTGTGGCCCGAGGCGCTGCCTCGCCGGG
CTCCGAGGTCTACGAGCCATTAACACCCAAGAATGACGAAAGTCCGAGTC
TGTGTGGCATCGGCATCGGCGGACCTTGCGCCATCGCCGTTGGCGAGACG
GAGGCGGCCGACGACATGGACGACGGAACGAGCAAGAAGACGACGCTACA
GATCTTGGAGCCTTTGAAGGGTCTGGACAAGAGCTGCGACGATGGCAGTA
GCGACGACATGAGCACCGGAATAAGAGCCTTAGCAGGAACCGGAAATCGT
GGAGCGGCATTTGCCAAATTTGGCAAGCCTTCGCCCCCACAAGGCCCTCA
GCCGCCCCTCGGAATGGGGGGCGTGGCCATGGGCGAATCGAACCAATATC
AATGCACGATGGATACGATAATGCAAGCGTATAATCCCCATCGGAACGCC
GCGGGCAACTCGCAGTTTGCCTACTGCTTCAATTAGCGAAGCTTTCTAGA
CCAT
BS01163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RD | 1470 | CG1034-PD | 1..1470 | 17..1486 | 7350 | 100 | Plus |
| bcd-RG | 1485 | CG1034-PG | 1..1485 | 17..1486 | 7165 | 99 | Plus |
| bcd-RF | 1242 | CG1034-PF | 1..1242 | 245..1486 | 6210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RD | 2499 | CG1034-RD | 196..1666 | 17..1487 | 7355 | 100 | Plus |
| bcd-RG | 2514 | CG1034-RG | 196..1681 | 17..1487 | 7170 | 99 | Plus |
| bcd-RF | 2521 | CG1034-RF | 196..1688 | 17..1487 | 7100 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757473..6758419 | 1201..255 | 4735 | 100 | Minus |
| 3L | 28110227 | 3L | 27540989..27541647 | 255..913 | 3235 | 99.4 | Plus |
| 3L | 28110227 | 3L | 27850078..27850736 | 255..913 | 3235 | 99.4 | Plus |
| 3R | 32079331 | 3R | 6756675..6756962 | 1487..1200 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 6759107..6759271 | 181..17 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 27540137..27540298 | 17..178 | 780 | 98.8 | Plus |
| 3L | 28110227 | 3L | 27849226..27849387 | 17..178 | 780 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6758465..6758548 | 264..181 | 390 | 97.6 | Minus |
| 3L | 28110227 | 3L | 27540860..27540943 | 181..264 | 390 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27849949..27850032 | 181..264 | 390 | 97.6 | Plus |
Blast to na_te.dros performed 2014-11-27 16:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..7013 | 782..979 | 279 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6888 | 782..891 | 233 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6849 | 782..891 | 233 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6921 | 782..912 | 227 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6892 | 782..913 | 225 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1200 | 757..912 | 197 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2473 | 782..891 | 183 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2529 | 782..973 | 182 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2533 | 782..906 | 166 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6977 | 782..914 | 160 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2840..2947 | 781..891 | 151 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2581 | 782..916 | 146 | 60.3 | Plus |
BS01163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:33 Download gff for
BS01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 1..1470 | 17..1486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:34 Download gff for
BS01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RF | 207..264 | 17..74 | 100 | <- | Plus |
| bcd-RF | 282..310 | 75..102 | 89 | == | Plus |
| bcd-RF | 311..372 | 121..181 | 98 | -> | Plus |
| bcd-RF | 394..1699 | 182..1487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:38 Download gff for
BS01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1666 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:33 Download gff for
BS01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RF | 207..264 | 17..74 | 100 | <- | Plus |
| bcd-RF | 282..310 | 75..102 | 89 | == | Plus |
| bcd-RF | 311..372 | 121..181 | 98 | -> | Plus |
| bcd-RF | 394..1699 | 182..1487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:53 Download gff for
BS01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1666 | 17..1488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:53 Download gff for
BS01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6758472..6758547 | 182..257 | 100 | <- | Minus |
| 3R | 6759107..6759271 | 17..181 | 100 | | Minus |
| 3R | 6756674..6756960 | 1202..1488 | 99 | <- | Minus |
| 3R | 6757473..6758416 | 258..1201 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:38 Download gff for
BS01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2584829..2584993 | 17..181 | 100 | | Minus |
| arm_3R | 2582396..2582682 | 1202..1488 | 99 | <- | Minus |
| arm_3R | 2583195..2584138 | 258..1201 | 100 | <- | Minus |
| arm_3R | 2584194..2584269 | 182..257 | 100 | <- | Minus |
BS01163.pep Sequence
Translation from 16 to 1485
> BS01163.pep
MAQPPPDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFR
NPFDLLFDERTGAINYNYIRPYLPNQMPKPEELPDSLVMRRPRRTRTTFT
SSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ
SDQHKDQSYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNALTPSPTPST
PTAHMTEHYSESFNAYYNYNGGHNHAQANRHMHMQYPSGGGPGPGSTNVN
GGQFFQQQQVHNHQQQLHHQGNHVPHQMQQQQQQAQQQQYHHFDFQQKQA
SACRVLVKDEPEADYNFNSSYYMRSGMSGATASASAVARGAASPGSEVYE
PLTPKNDESPSLCGIGIGGPCAIAVGETEAADDMDDGTSKKTTLQILEPL
KGLDKSCDDGSSDDMSTGIRALAGTGNRGAAFAKFGKPSPPQGPQPPLGM
GGVAMGESNQYQCTMDTIMQAYNPHRNAAGNSQFAYCFN*
BS01163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-PD | 489 | CG1034-PD | 1..489 | 1..489 | 2689 | 100 | Plus |
| bcd-PG | 494 | CG1034-PG | 1..494 | 1..489 | 2673 | 99 | Plus |
| bcd-PF | 413 | CG1034-PF | 1..413 | 77..489 | 2221 | 100 | Plus |
| bcd-PE | 418 | CG1034-PE | 1..418 | 77..489 | 2205 | 98.8 | Plus |
| bcd-PA | 149 | CG1034-PA | 56..149 | 396..489 | 510 | 100 | Plus |
