Clone Sequence Records
BS01166.3prime Sequence
771 bp (770 high quality bases) assembled on 2005-11-30
> BS01166.3prime
ATGGTCTAGAAAGCTTCGTTATTTAATCTTGTGGAACTCCTCCATGCATA
GCTTGCAGCTCCAAGAACCCTCTGGTGGAGTCACAAGCGGTGGTGACAGG
CAGTACATATGGTATCCCCGGTCACAATCGTCACAAAATAAAAGTTGATC
GTCATTATCAGAGGTCCCACAGATGGAGCAGTACTTGCATTCAATGCATT
GCCAACGATAACGTTTTACCGATATAATCATATTTGCCGTGAACTGCAGA
CACGATGGATGACCGGAACGACCACAGTCCGAGCACGATACTAGCTCTTC
GGGCATATTGGTTTTTTTATTTTCTCGTTGATCTCCCAGACAAAAGTCAC
AATAAGGTGATGGTTGCGCTATGTCACGTTCTACACGTTGTTTGACCTTA
TTACCAGTAGCAAACACCGTTTGATTTGTTCCTGTTTGCACCGGATGCGC
ATTGCAAACATTTGAGGTTGTCAGGCCCGCGTTTATGGCAACCATTGTTG
CTAGGGGAATTGAGTCATTGGAAGCTCCAGCATCGCTTGAAGTCTTATCG
TACGACGACGATATGTTTGTTGGCAGTATGAGTCCTGACTGTGAATTGTC
GTCATTTATGGGAATAGGCGAAGCTGAGTTGGAATGAGATGCATAGAGCC
CAGTGCTAGCGACAGCAGCTGCAGTACATGCTGCATGTGCGACAGCGGCG
GCAGCTGCCGCTGCGGCTGCGGATGTATTTGCACTATTTCCACCGGCTCT
ACGTTTTCGATCAGATTCTCC
BS01166.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2682-PA | 1494 | d4-RA | 742..1494 | 771..19 | 3765 | 100 | Minus |
| CG2682-PC | 1488 | d4-RC | 736..1488 | 771..19 | 3765 | 100 | Minus |
| CG2682-PB | 1020 | d4-RB | 268..1020 | 771..19 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-RD | 1764 | CG2682-RD | 941..1693 | 771..19 | 3765 | 100 | Minus |
| d4-RB | 1850 | CG2682-RB | 1027..1779 | 771..19 | 3765 | 100 | Minus |
| d4-RC | 1761 | CG2682-RC | 938..1690 | 771..19 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5295142..5295894 | 771..19 | 3765 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:36:34 has no hits.
BS01166.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:02:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:17 Download gff for
BS01166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2682-PB | 268..1020 | 19..771 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:27:21 Download gff for
BS01166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RC | 938..1690 | 19..771 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:09 Download gff for
BS01166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RC | 938..1690 | 19..771 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:09 Download gff for
BS01166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5295142..5295894 | 19..771 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:27:21 Download gff for
BS01166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1182647..1183399 | 19..771 | 100 | | Minus |
BS01166.5prime Sequence
769 bp (768 high quality bases) assembled on 2005-11-30
> BS01166.5prime
GAAGTTATCAGTCGACATGGCTTCCAAATCTGCGTACGAAAAAACTTTGG
TAGTAAACATTGCCAATTTTGAAAAAATTCAGAACTTTTTAAATGACAAG
GAAAAGTACAAGGAGATTCTAGAAAACAGCGAGAATTTCAACACTCGTCT
ATGCATTGAACGTCGACTTCGCATGCCATTCCTCGATCCCCAGACAGGTG
TCGCACAGACACATTGCTCCCTCTTTATGAAAAAAAAACAGCGAATGCCA
GGTCTTCGACATGGTCAGATATACACTTATCCATCGTCTCGGTGGCGCAA
ACCAAAACGTCAGTACTTACTTAACCCGAATCAAAGTTTCCGAGCCTATC
AGTATCGCGAGCACAACCTTCAGCACTCCCACCATCAAACGCATCAGCAT
CACCATCATATACCTTCGTCTGGCGTTGCTGTACCACAAAATCCTCACTT
AGCTGAAAGCGCAGCCATTGCTGCTACGGATGGCAACTCCATGGGAGCAT
CAGGAGATAATGATAGTAAGGACTCACATGCAAACGTCGAAAAAGAATGG
TTCCACGATGAAATGGACACATCACATTTTCATCATGGCGATGAATTTGA
GGATGACTTTGATTCAGATAACGATTTTGATGAGTCTTACACCAGCCGGG
GCAAACGCAAAAAGTGTTCGCGTCCTAGACGAACAAATGCAAACGTAGAG
GGTACTCCCAAACGGGGACGTAAAGGTGGTGGCAATCGTCGAAAGAACGC
CGTTGAGGGAGAATCTGAT
BS01166.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2682-PA | 1494 | d4-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
| CG2682-PC | 1488 | d4-RC | 1..710 | 17..726 | 3550 | 100 | Plus |
| CG2682-PB | 1020 | d4-RB | 1..279 | 491..769 | 1395 | 100 | Plus |
| CG2682-PC | 1488 | d4-RC | 709..747 | 731..769 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-RA | 1767 | CG2682-RA | 201..955 | 15..769 | 3775 | 100 | Plus |
| d4-RD | 1764 | CG2682-RD | 201..952 | 15..769 | 3720 | 99.6 | Plus |
| d4-RC | 1761 | CG2682-RC | 201..949 | 15..769 | 3675 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5294263..5294712 | 15..464 | 2250 | 100 | Plus |
| 2R | 25286936 | 2R | 5294794..5295064 | 462..732 | 1355 | 100 | Plus |
| 2R | 25286936 | 2R | 5295115..5295153 | 731..769 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:05:27 has no hits.
BS01166.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:02:45 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:19 Download gff for
BS01166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2682-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:40:24 Download gff for
BS01166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 196..955 | 9..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:47 Download gff for
BS01166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 196..955 | 9..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:47 Download gff for
BS01166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5294258..5294712 | 9..464 | 99 | -> | Plus |
| 2R | 5294797..5295063 | 465..731 | 100 | -> | Plus |
| 2R | 5295116..5295153 | 732..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:40:24 Download gff for
BS01166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1181763..1182217 | 9..464 | 99 | -> | Plus |
| arm_2R | 1182302..1182568 | 465..731 | 100 | -> | Plus |
| arm_2R | 1182621..1182658 | 732..769 | 100 | | Plus |
BS01166.complete Sequence
1528 bp (1528 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634552
> BS01166.complete
GAAGTTATCAGTCGACATGGCTTCCAAATCTGCGTACGAAAAAACTTTGG
TAGTAAACATTGCCAATTTTGAAAAAATTCAGAACTTTTTAAATGACAAG
GAAAAGTACAAGGAGATTCTAGAAAACAGCGAGAATTTCAACACTCGTCT
ATGCATTGAACGTCGACTTCGCATGCCATTCCTCGATCCCCAGACAGGTG
TCGCACAGACACATTGCTCCCTCTTTATGAAAAAAAAACAGCGAATGCCA
GGTCTTCGACATGGTCAGATATACACTTATCCATCGTCTCGGTGGCGCAA
ACCAAAACGTCAGTACTTACTTAACCCGAATCAAAGTTTCCGAGCCTATC
AGTATCGCGAGCACAACCTTCAGCACTCCCACCATCAAACGCATCAGCAT
CACCATCATATACCTTCGTCTGGCGTTGCTGTACCACAAAATCCTCACTT
AGCTGAAAGCGCAGCCATTGCTGCTACGGATGGCAACTCCATGGGAGCAT
CAGGAGATAATGATAGTAAGGACTCACATGCAAACGTCGAAAAAGAATGG
TTCCACGATGAAATGGACACATCACATTTTCATCATGGCGATGAATTTGA
GGATGACTTTGATTCAGATAACGATTTTGATGAGTCTTACACCAGCCGGG
GCAAACGCAAAAAGTGTTCGCGTCCTAGACGAACAAATGCAAACGTAGAG
GGTACTCCCAAACGGGGACGTAAAGGTGGTGGCAATCGTCGAAAGAACGC
CGTTGAGGGAGAATCTGATCGAAAACGTAGAGCCGGTGGAAATAGTGCAA
ATACATCCGCAGCCGCAGCGGCAGCTGCCGCCGCTGTCGCACATGCAGCA
TGTACTGCAGCTGCTGTCGCTAGCACTGGGCTCTATGCATCTCATTCCAA
CTCAGCTTCGCCTATTCCCATAAATGACGACAATTCACAGTCAGGACTCA
TACTGCCAACAAACATATCGTCGTCGTACGATAAGACTTCAAGCGATGCT
GGAGCTTCCAATGACTCAATTCCCCTAGCAACAATGGTTGCCATAAACGC
GGGCCTGACAACCTCAAATGTTTGCAATGCGCATCCGGTGCAAACAGGAA
CAAATCAAACGGTGTTTGCTACTGGTAATAAGGTCAAACAACGTGTAGAA
CGTGACATAGCGCAACCATCACCTTATTGTGACTTTTGTCTGGGAGATCA
ACGAGAAAATAAAAAAACCAATATGCCCGAAGAGCTAGTATCGTGCTCGG
ACTGTGGTCGTTCCGGTCATCCATCGTGTCTGCAGTTCACGGCAAATATG
ATTATATCGGTAAAACGTTATCGTTGGCAATGCATTGAATGCAAGTACTG
CTCCATCTGTGGGACCTCTGATAATGACGATCAACTTTTATTTTGTGACG
ATTGTGACCGGGGATACCATATGTACTGCCTGTCACCACCGCTTGTGACT
CCACCAGAGGGTTCTTGGAGCTGCAAGCTATGCATGGAGGAGTTCCACAA
GATTAAATAACGAAGCTTTCTAGACCAT
BS01166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-RA | 1494 | CG2682-PA | 1..1494 | 17..1510 | 7470 | 100 | Plus |
| d4-RD | 1491 | CG2682-PD | 1..1491 | 17..1510 | 7390 | 99.8 | Plus |
| d4-RC | 1488 | CG2682-PC | 1..1488 | 17..1510 | 7345 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-RA | 1767 | CG2682-RA | 201..1696 | 15..1510 | 7480 | 100 | Plus |
| d4-RD | 1764 | CG2682-RD | 201..1693 | 15..1510 | 7400 | 99.8 | Plus |
| d4-RC | 1761 | CG2682-RC | 201..1690 | 15..1510 | 7355 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5295115..5295894 | 731..1510 | 3900 | 100 | Plus |
| 2R | 25286936 | 2R | 5294263..5294712 | 15..464 | 2250 | 100 | Plus |
| 2R | 25286936 | 2R | 5294794..5295064 | 462..732 | 1355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:58:06 has no hits.
BS01166.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:34 Download gff for
BS01166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 1..1494 | 17..1510 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:36 Download gff for
BS01166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 176..1676 | 9..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:20 Download gff for
BS01166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 203..1697 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:35 Download gff for
BS01166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 176..1676 | 9..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:01 Download gff for
BS01166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 203..1697 | 17..1512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:01 Download gff for
BS01166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5294265..5294712 | 17..464 | 100 | -> | Plus |
| 2R | 5294797..5295063 | 465..731 | 100 | -> | Plus |
| 2R | 5295116..5295895 | 732..1512 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:20 Download gff for
BS01166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1181770..1182217 | 17..464 | 100 | -> | Plus |
| arm_2R | 1182302..1182568 | 465..731 | 100 | -> | Plus |
| arm_2R | 1182621..1183400 | 732..1512 | 99 | | Plus |
BS01166.pep Sequence
Translation from 16 to 1509
> BS01166.pep
MASKSAYEKTLVVNIANFEKIQNFLNDKEKYKEILENSENFNTRLCIERR
LRMPFLDPQTGVAQTHCSLFMKKKQRMPGLRHGQIYTYPSSRWRKPKRQY
LLNPNQSFRAYQYREHNLQHSHHQTHQHHHHIPSSGVAVPQNPHLAESAA
IAATDGNSMGASGDNDSKDSHANVEKEWFHDEMDTSHFHHGDEFEDDFDS
DNDFDESYTSRGKRKKCSRPRRTNANVEGTPKRGRKGGGNRRKNAVEGES
DRKRRAGGNSANTSAAAAAAAAAVAHAACTAAAVASTGLYASHSNSASPI
PINDDNSQSGLILPTNISSSYDKTSSDAGASNDSIPLATMVAINAGLTTS
NVCNAHPVQTGTNQTVFATGNKVKQRVERDIAQPSPYCDFCLGDQRENKK
TNMPEELVSCSDCGRSGHPSCLQFTANMIISVKRYRWQCIECKYCSICGT
SDNDDQLLFCDDCDRGYHMYCLSPPLVTPPEGSWSCKLCMEEFHKIK*
BS01166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-PA | 497 | CG2682-PA | 1..497 | 1..497 | 2687 | 100 | Plus |
| d4-PD | 496 | CG2682-PD | 1..496 | 1..497 | 2669 | 99.8 | Plus |
| d4-PC | 495 | CG2682-PC | 1..495 | 1..497 | 2662 | 99.6 | Plus |
| d4-PB | 339 | CG2682-PB | 1..339 | 159..497 | 1836 | 100 | Plus |
| tth-PC | 428 | CG12175-PC | 9..317 | 12..275 | 398 | 34.9 | Plus |
