Clone Sequence Records
BS01168.complete Sequence
1534 bp assembled on 2010-04-13
GenBank Submission: KX796121
> BS01168.complete
GAAGTTATCAGTCGACATGGCCGACACGAAATCCGGTAGTGGTCGGCATT
CGGCTGCCGGGGGAAGTGGAAACGCCGTCCTGTCGCCCTTGGGGCAGGGT
CCTGCGAACTTGGAGTGTAAGGACTTTCAGGAGTATCTGCGCACCCGCCA
AACGCCAGAGTCGCTGGAGAAGCTGTACAACTATCCGCCCATTTGTTTGG
CCGTTTTTCGGGAGCTTCCAGAGATAGCCCGGCAGTTTATCATAAGGATA
CTGTTCGTGGATCAGCCTGTGCCACAAGCGGTGGTCACATCATGGGGTGC
CCAACGTTGTGCCAAGGAGCAAGCCGAGGCAACCAGCTGCCTGACGGCTT
TGAACGTCTGGCGGGTCACAGCCATTCCGGGTGGCCTTTCTGCGTGGGAG
CTCTCGCCCACCTTCAAGAAAAGCGTACGCCAGGTGCTGCTGGGCGGCGG
AAAACCTTGGCCTATGACCAACACGCTGGATAAGGACTCGAAGCCCAGGG
ACATTGCTTTTCTGGATACATACGCCATGTCCCGCTGGCGTTGCGTGTTG
CACTACATGGTCGGCACCGGAAATCGCAATGGCACCGATGCGGAGGCCAT
TAGTCCGGACGCCGTTCGGATTCTGCTGCACGCCAATCTCATGAAACGTG
ATGAACGAGACGGTATCACAATAACCCGGCAGGGCTTTCAGTTCCTGCTG
CTGGACACGCGAGCTCAGGTGTGGCATTTTATGCTACAGTACCTGGACAC
GTGCGAAGAAAGAGGAATCAGCCTGCCGGAATGCTTGTCCATGTTGTTCC
AGCTCAGTTTTTCAACGCTGGGCAGGGATTACAGTTCCGAGGGCATGAAC
AGTCAGATGCTGACATTCCTGCAGCATCTACGGGAGTTTGGACTGGTCTT
CCAACGTAAGCGTAAGGAGGGACGCTTCTATCCCACACGTTTGGCTCTGA
ATGTGACAAGCAAGGAGGCGGCTGCGACTGCATCTGTGGCCATGGATGAG
GAGGCCACTCAGGACTGTGGCTACATTGTGGTGGAGACGAACTACCGAGT
GTATGCCTACACTGATTCTCCGCTCCAGGTAGCCGTGTTAGGTCTGTTCA
CGGAGCTTCTCTACCGCTTTCCCAATCTCGTCGTGGGCGTGCTAACCCGC
GATTCAGTGCGCCAGGCGTTGCGTGGCGGTATCACGGCAGAGCAGATTGT
CTCGTATCTGGAGCAGTATGCGCATCCCAATATGCGCATGGTCGAGTCAG
CCATTCACTCTAAATCCTGCCTGCCACCCACAGTCGTTGATCAAATTAAG
CTGTGGGAATTAGAGCGAAATCGCTTCACCTACACCGAAGGCGTGCTGTA
CAATCAGTTCCTCTCGCATACAGATTTCGTAACGCTACGAGACTACGCCC
AGTCGATCCACATGCTGGTGTGGCAAAATGAGCGAACTCGCACAATGGTG
GTGCAAAAGAATGGCCACGACGATGTCAAGCGTTACTGGAAGAAGTACTC
TAAGAGTGGTGTTTAGCGAAGCTTTCTAGACCAT
BS01168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-RA | 1500 | CG7764-PA | 1..1500 | 17..1516 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-RA | 1714 | CG7764-RA | 27..1532 | 12..1517 | 7515 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15578951..15580152 | 1517..316 | 6010 | 100 | Minus |
| 3L | 28110227 | 3L | 15580207..15580511 | 316..12 | 1510 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:16:18 has no hits.
BS01168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:43 Download gff for
BS01168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb2-RA | 170..1670 | 17..1518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:32 Download gff for
BS01168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 32..1532 | 17..1518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:59 Download gff for
BS01168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 32..1532 | 17..1518 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:59 Download gff for
BS01168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15578950..15580152 | 316..1518 | 99 | <- | Minus |
| 3L | 15580208..15580506 | 17..315 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:32 Download gff for
BS01168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15572050..15573252 | 316..1518 | 99 | <- | Minus |
| arm_3L | 15573308..15573606 | 17..315 | 100 | | Minus |
BS01168.3prime Sequence
895 bp (719 high quality bases) assembled on 2005-11-30
> BS01168.3prime
ATGGTCTAGAAAGCTTCGCTAAACACCACTCTTAGAGTACTTCTTCCAGT
AACGCTTGACATCGTCGTGGCCATTCTTTTGCACCACCATTGTGCGAGTT
CGCTCATTTTGCCACACCAGCATGTGGATCGACTGGGCGTAGTCTCGTAG
CGTTACGAAATCTGTATGCGAGAGGAACTGATTGTACAGCACGCCTTCGG
TGTAGGTGAAGCGATTTCGCTCTAATTCCCACAGCTTAATTTGATCAACG
ACTGTGGGTGGCAGGCAGGATTTAGAGTGAATGGCTGACTCGACCATGCG
CATATTGGGATGCGCATACTGCTCCAGATACGAGACAATCTGCTCTGCCG
TGATACCGCCACGCAACGCCTGGCGCACTGAATCGCGGGTTAGCACGCCC
ACGACGAGATTGGGAAAGCGGTAGAGAAGCTCCGTGAACAGACCTAACAC
GGCTACCTGGAGCGGAGAATCAGTGTAGGCATACACTCGGTAGTTCGTCT
CCACCACAATGTAGCCACAGTCCTGAGTGGCCTCCTCATCCATGGCCACA
GATGCAGTCGCAGCCGCCTCCTTGCTTGTCACATTCAGAGCCAAACGTGT
GGGATAGAAGCGTCCCTCCTTACGCTTACGTTGGAAGACCAGTCCAAACT
CCCGTAGATGCTGCAGGAATGTCAGCATCTGACTGTTCATGCCCTCGGAA
CTGTAATCCCTGCCCAGCGTTGAAAAACTGAGCTGGAACAACATGGACAA
GCATTCCGGCAGGCTGATTCCTCTTTCTTCGCACGTGTCCAGGTACTGTA
GCATAAAATGCCACACCTGAGCTCGCGTGTCCAGCAGCANGAACTGAAAG
CCCCTGCGGGGTATTGTGATACCGTCTCGTTCATCACGTTTCATG
BS01168.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7764-PA | 1500 | Tfb2-RA | 666..1500 | 853..19 | 4156 | 99.8 | Minus |
| CG7764-PA | 1500 | Tfb2-RA | 624..657 | 895..862 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-RA | 1714 | CG7764-RA | 655..1532 | 895..18 | 4319 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15578951..15579828 | 18..895 | 4319 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:47:50 has no hits.
BS01168.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:48 Download gff for
BS01168.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb2-PA | 624..1500 | 19..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:22 Download gff for
BS01168.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7764-PA | 624..1500 | 19..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:43 Download gff for
BS01168.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 655..1532 | 18..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:08 Download gff for
BS01168.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 655..1532 | 18..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:08 Download gff for
BS01168.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15578951..15579828 | 18..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:43 Download gff for
BS01168.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15572051..15572928 | 18..895 | 99 | | Plus |
BS01168.5prime Sequence
823 bp (776 high quality bases) assembled on 2005-11-30
> BS01168.5prime
GAAGTTATCAGTCGACATGGCCGACACGAAATCCGGTAGTGGTCGGCATT
CGGCTGCCGGGGGAAGTGGAAACGCCGTCCTGTCGCCCTTGGGGCAGGGT
CCTGCGAACTTGGAGTGTAAGGACTTTCAGGAGTATCTGCGCACCCGCCA
AACGCCAGAGTCGCTGGAGAAGCTGTACAACTATCCGCCCATTTGTTTGG
CCGTTTTTCGGGAGCTTCCAGAGATAGCCCGGCAGTTTATCATAAGGATA
CTGTTCGTGGATCAGCCTGTGCCACAAGCGGTGGTCACATCATGGGGTGC
CCAACGTTGTGCCAAGGAGCAAGCCGAGGCAACCAGCTGCCTGACGGCTT
TGAACGTCTGGCGGGTCACAGCCATTCCGGGTGGCCTTTCTGCGTGGGAG
CTCTCGCCCACCTTCAAGAAAAGCGTACGCCAGGTGCTGCTGGGCGGCGG
AAAACCTTGGCCTATGACCAACACGCTGGATAAGGACTCGAAGCCCAGGG
ACATTGCTTTTCTGGATACATACGCCATGTCCCGCTGGCGTTGCGTGTTG
CACTACATGGTCGGCACCGGAAATCGCAATGGCACCGATGCGGAGGCCAT
TAGTCCGGACGCCGTTCGGATTCTGCTGCACGCCAATCTCATGAAACGTG
ATGAACGAGACGGTATCACAATAACCCGGCAGGGCTTTCAGTTCCTGCTG
CTGGACACGCGAGCTCAGGTGTGGCATTTTATGCTACAGTACCTGGACAC
GTGCGAAGAAAGAGGAATCAGCCTGCCGGAATGCTTTGTCATGTTGTTCC
AGCTCAGTTTTTTCACGCTGGGC
BS01168.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7764-PA | 1500 | Tfb2-RA | 1..770 | 17..786 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-RA | 1714 | CG7764-RA | 27..838 | 12..823 | 3970 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15579645..15580152 | 823..316 | 2465 | 99 | Minus |
| 3L | 28110227 | 3L | 15580207..15580511 | 316..12 | 1510 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:10:59 has no hits.
BS01168.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:49 Download gff for
BS01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb2-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:23 Download gff for
BS01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7764-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:34:14 Download gff for
BS01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 27..838 | 12..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:25 Download gff for
BS01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 27..838 | 12..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:25 Download gff for
BS01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15579645..15580152 | 316..823 | 99 | <- | Minus |
| 3L | 15580208..15580506 | 17..315 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:34:14 Download gff for
BS01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15572745..15573252 | 316..823 | 99 | <- | Minus |
| arm_3L | 15573308..15573606 | 17..315 | 100 | -> | Minus |
BS01168.pep Sequence
Translation from 16 to 1515
> BS01168.pep
MADTKSGSGRHSAAGGSGNAVLSPLGQGPANLECKDFQEYLRTRQTPESL
EKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAK
EQAEATSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGGKPWPM
TNTLDKDSKPRDIAFLDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAV
RILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYLDTCEERG
ISLPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLVFQRKRK
EGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTD
SPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQ
YAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLS
HTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSKSGV*
BS01168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-PA | 499 | CG7764-PA | 1..499 | 1..499 | 2611 | 100 | Plus |
