Clone BS01169 Report

Search the DGRC for BS01169

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG2712-RA
Protein status:BS01169.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01169.3prime Sequence

890 bp (763 high quality bases) assembled on 2005-11-30

> BS01169.3prime
ATGGTCTAGAAAGCTTCGTCAGGTCTCCACATTCTCGTCCTGCTCCTCCA
GTTGGACACCCACTTCATGCTCGGCCCGCCTCCGCTGTCTGCCCGCCTTG
TGCGACTGGCGATGGATGGCGAGTGAGATGCGGCGCTTGAAGGACTTGCC
GCACTGCTCACAGCCGAACGGTCGCTCGCTGCTGTGGACGAGCATGTGGC
GGTTGAGCTCGGATGTGCTGCCGAAGCTGCGCTTCTGGCACACCGGGCAC
GGGTGGGGCTTCTCCTGGCTGTGGCAGCGCTTGTGGGCAATCAGATTGCT
CGAGTAGCGGAAGCGACGGCCGCAAATGTCGCAGCCGTGCGGCTTCTCGC
CCGTGTGGGTGAGCATGTGCTTCTTGTAGCCCGACTTCTGTGTTAGCCTC
TTGCCGCAGATGCTGCACTCGAATGGCTTGATTCCGCTGTGGATTAGAAG
GTGTGTGCGCAGCGAGGACGCCTGCCGGTAGACCTTGAAGCAGGTGGGGC
ACCTGTTCGGATTGTTACGATCGTGCAGCGTGACATGGCCGTCGCGGGCG
TTTCGCGTCTTAAAGGACTCTCCGCAGATTGTGCAAACGTAGGGCGTGGC
CGTGCCATGTAGCTGCATATGGTACTTGAAGGAGTTGTTGGTGCTTAGTT
GCTTGCCACAGATTTTACACTGTAGGGAGGGATTGAGGGGTTTCCAAGGC
CGGCTTCCACTGGGCAAAGTTTTCTGCGTCGCCGAAGTCTGTGCTGATTT
CTCCACAATCTCGTAGACATCTTCGCCAGCTTTGGCCTGCAAAACGGGCT
CCACTTGGAGGCACTCTTTCATGCAGTGGTCGTTGTCTTCTTGGCGAATT
TTTGGCTGGCCATGTAGCCTCATGTGGTACTGAAAGGTCC

BS01169.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-PA 1506 CG2712-RA 635..1506 890..19 4310 99.7 Minus
CG2711-PA 1779 dwg-RA 1366..1392 390..364 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-RA 1804 CG2712-RA 731..1602 890..19 4330 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2733556..2734200 663..19 3225 100 Minus
X 23542271 X 2733259..2733485 890..664 1105 99.1 Minus
Blast to na_te.dros performed on 2015-01-31 15:20:57 has no hits.

BS01169.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:50 Download gff for BS01169.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-PA 635..1506 19..890 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:25 Download gff for BS01169.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-PA 635..1506 19..890 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:25:56 Download gff for BS01169.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 731..1606 12..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:41:53 Download gff for BS01169.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 731..1606 12..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:41:53 Download gff for BS01169.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2733259..2733485 664..890 99 -> Minus
X 2733556..2734204 12..663 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:25:56 Download gff for BS01169.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2627292..2627518 664..890 99 -> Minus
arm_X 2627589..2628237 12..663 99   Minus

BS01169.5prime Sequence

815 bp (722 high quality bases) assembled on 2005-11-30

> BS01169.5prime
GAAGTTATCAGTCGACATGACGACCATGTCGCCGCCGTCCCCCATGGACG
CCTTGTGCCGCGTGTGCCACACAGCATCGCCGCGCTGCCTGCCGCTCTTC
AAACCGCTCGACGATCCAATTTCCGGCAAACCAGCGACGCTGGCCAGCAT
TTTAAGCTACTGCAGCGGTCTGGAGATCCTAGAGGCGGAGCTCTTCCTGC
CCCACCACATCTGCCCGGACTGCGTGGCCAAGTTGCGGCTCTCGCTGGAA
TTCAAGCGGAGTGTCCATCGCATGGACAGAATTCTGCGGCAGAGTCATGC
GGACTTTTGCCGCAGCAAAAAGATCAGCGCGGTGAATACTAGGGCCAGGC
TGTCAACCGAGATTCCGGAGGATTTTGTACTCGTGCTCGATGACCAGGAA
GTGACTGAATATCCAGCAGAAACGATACGAGATGAGGAGCAACTCCTGGT
CGTAGAATCAGATGAGGCGGAGAGCCGGCTGGAAGCGCCAATTGTACAGG
AGGAGAGGCTGGATATTGCACTGGAACAGCACGAAGACGATCTCTGCGAG
ATTGTCGACGATCCGGATCCGGAGCAACGTAGGAGCAGGTTAGAAAGATC
CGAGCCAGCGCTGCAATGTCCCATTTGCGGCAAACAACTGGCTAGGAAGC
GGACCTTTCAGTACCACATGAGGCTACATGGCCAGCCAAAAATTCGCCAA
GAAGACAACGACCACTGCATTGAAGAGTGCCTCCAAGTGGAGCCCGTTTT
GCAGGCCAAAGCTGGCGAAGATGTCTACGAGATTGTGGAGAAATCAGCAC
AGACTTCGGCGACGC

BS01169.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-PA 1506 CG2712-RA 1..799 17..815 3995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-RA 1804 CG2712-RA 96..895 16..815 4000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2732564..2733170 16..622 3035 100 Plus
X 23542271 X 2733231..2733423 623..815 965 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:25:39 has no hits.

BS01169.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:51 Download gff for BS01169.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-PA 1..799 17..815 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:26 Download gff for BS01169.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-PA 1..799 17..815 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:20:54 Download gff for BS01169.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 87..895 3..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:30 Download gff for BS01169.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 87..895 3..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:30 Download gff for BS01169.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2733231..2733423 623..815 100   Plus
X 2732555..2733170 3..622 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:20:54 Download gff for BS01169.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2626588..2627203 3..622 99 -> Plus
arm_X 2627264..2627456 623..815 100   Plus

BS01169.complete Sequence

1540 bp (1540 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634553

> BS01169.complete
GAAGTTATCAGTCGACATGACGACCATGTCGCCGCCGTCCCCCATGGACG
CCTTGTGCCGCGTGTGCCACACAGCATCGCCGCGCTGCCTGCCGCTCTTC
AAACCGCTCGACGATCCAATTTCCGGCAAACCAGCGACGCTGGCCAGCAT
TTTAAGCTACTGCAGCGGTCTGGAGATCCTAGAGGCGGAGCTCTTCCTGC
CCCACCACATCTGCCCGGACTGCGTGGCCAAGTTGCGGCTCTCGCTGGAA
TTCAAGCGGAGTGTCCATCGCATGGACAGAATTCTGCGGCAGAGTCATGC
GGACTTTTGCCGCAGCAAAAAGATCAGCGCGGTGAATACTAGGGCCAGGC
TGTCAACCGAGATTCCGGAGGATTTTGTACTCGTGCTCGATGACCAGGAA
GTGACTGAATATCCAGCAGAAACGATACGAGATGAGGAGCAACTCCTGGT
CGTAGAATCAGATGAGGCGGAGAGCCGGCTGGAAGCGCCAATTGTACAGG
AGGAGAGGCTGGATATTGCACTGGAACAGCACGAAGACGATCTCTGCGAG
ATTGTCGACGATCCGGATCCGGAGCAACGTAGGAGCAGGTTAGAAAGATC
CGAGCCAGCGCTGCAATGTCCCATTTGCGGCAAACAACTGGCTAGGAAGC
GGACCTTTCAGTACCACATGAGGCTACATGGCCAGCCAAAAATTCGCCAA
GAAGACAACGACCACTGCATTGAAGAGTGCCTCCAAGTGGAGCCCGTTTT
GCAGGCCAAAGCTGGCGAAGATGTCTACGAGATTGTGGAGAAATCAGCAC
AGACTTCGGCGACGCAGAAAACTTTGCCCAGTGGAAGCCGGCCTTGGAAA
CCCCTCAATCCCTCCCTACAGTGTAAAATCTGTGGCAAGCAACTAAGCAC
CAACAACTCCTTCAAGTACCATATGCAGCTACATGGCACGGCCACGCCCT
ACGTTTGCACAATCTGCGGAGAGTCCTTTAAGACGCGAAACGCCCGCGAC
GGCCATGTCACGCTGCACGATCGTAACAATCCGAACAGGTGCCCCACCTG
CTTCAAGGTCTACCGGCAGGCGTCCTCGCTGCGCACACACCTTCTAATCC
ACAGCGGAATCAAGCCATTCGAGTGCAGCATCTGCGGCAAGAGGCTAACA
CAGAAGTCGGGCTACAAGAAGCACATGCTCACCCACACGGGCGAGAAGCC
GCACGGCTGCGACATTTGCGGCCGTCGCTTCCGCTACTCGAGCAATCTGA
TTGCCCACAAGCGCTGCCACAGCCAGGAGAAGCCCCACCCGTGCCCGGTG
TGCCAGAAGCGCAGCTTCGGCAGCACATCCGAGCTCAACCGCCACATGCT
CGTCCACAGCAGCGAGCGACCGTTCGGCTGTGAGCAGTGCGGCAAGTCCT
TCAAGCGCCGCATCTCACTCGCCATCCATCGCCAGTCGCACAAGGCGGGC
AGACAGCGGAGGCGGGCCGAGCATGAAGTGGGTGTCCAACTGGAGGAGCA
GGACGAGAATGTGGAGACCTGACGAAGCTTTCTAGACCAT

BS01169.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-RA 1506 CG2712-PA 1..1506 17..1522 7530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-RA 1804 CG2712-RA 96..1602 16..1522 7535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2733556..2734200 878..1522 3225 100 Plus
X 23542271 X 2732564..2733170 16..622 3035 100 Plus
X 23542271 X 2733231..2733485 623..877 1275 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:18:55 has no hits.

BS01169.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:37 Download gff for BS01169.complete
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 1..1506 17..1522 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:39 Download gff for BS01169.complete
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 178..1697 3..1529 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:48 Download gff for BS01169.complete
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 97..1604 17..1524 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:37 Download gff for BS01169.complete
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 178..1697 3..1529 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:16 Download gff for BS01169.complete
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 97..1604 17..1524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:16 Download gff for BS01169.complete
Subject Subject Range Query Range Percent Splice Strand
X 2732565..2733170 17..622 100 -> Plus
X 2733231..2733485 623..877 100 -> Plus
X 2733556..2734202 878..1524 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:48 Download gff for BS01169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2626598..2627203 17..622 100 -> Plus
arm_X 2627264..2627518 623..877 100 -> Plus
arm_X 2627589..2628235 878..1524 99   Plus

BS01169.pep Sequence

Translation from 16 to 1521

> BS01169.pep
MTTMSPPSPMDALCRVCHTASPRCLPLFKPLDDPISGKPATLASILSYCS
GLEILEAELFLPHHICPDCVAKLRLSLEFKRSVHRMDRILRQSHADFCRS
KKISAVNTRARLSTEIPEDFVLVLDDQEVTEYPAETIRDEEQLLVVESDE
AESRLEAPIVQEERLDIALEQHEDDLCEIVDDPDPEQRRSRLERSEPALQ
CPICGKQLARKRTFQYHMRLHGQPKIRQEDNDHCIEECLQVEPVLQAKAG
EDVYEIVEKSAQTSATQKTLPSGSRPWKPLNPSLQCKICGKQLSTNNSFK
YHMQLHGTATPYVCTICGESFKTRNARDGHVTLHDRNNPNRCPTCFKVYR
QASSLRTHLLIHSGIKPFECSICGKRLTQKSGYKKHMLTHTGEKPHGCDI
CGRRFRYSSNLIAHKRCHSQEKPHPCPVCQKRSFGSTSELNRHMLVHSSE
RPFGCEQCGKSFKRRISLAIHRQSHKAGRQRRRAEHEVGVQLEEQDENVE
T*

BS01169.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-PA 501 CG2712-PA 1..501 1..501 2691 100 Plus
dwg-PA 592 CG2711-PA 14..528 14..452 463 27.3 Plus
crol-PG 878 CG14938-PG 293..588 187..483 397 29.2 Plus
crol-PB 891 CG14938-PB 390..672 200..483 394 30.2 Plus
crol-PI 962 CG14938-PI 390..672 200..483 394 30.2 Plus
crol-PB 891 CG14938-PB 275..467 282..475 388 35.1 Plus
crol-PB 891 CG14938-PB 293..579 187..475 385 29.4 Plus
crol-PB 891 CG14938-PB 223..411 286..475 354 34.2 Plus
crol-PB 891 CG14938-PB 409..683 191..462 350 29.9 Plus
crol-PG 878 CG14938-PG 325..612 191..475 349 29.3 Plus
crol-PG 878 CG14938-PG 275..474 282..482 346 32.3 Plus
crol-PG 878 CG14938-PG 251..439 286..475 344 32.1 Plus
crol-PG 878 CG14938-PG 223..411 286..475 336 33.7 Plus
crol-PG 878 CG14938-PG 381..637 191..444 274 27 Plus
dwg-PA 592 CG2711-PA 304..415 367..479 216 32.7 Plus
crol-PG 878 CG14938-PG 437..649 191..427 213 25.2 Plus
dwg-PA 592 CG2711-PA 240..542 123..381 177 23.8 Plus
crol-PG 878 CG14938-PG 221..327 396..475 158 33.3 Plus