Clone Sequence Records
BS01178.3prime Sequence
782 bp (759 high quality bases) assembled on 2005-11-30
> BS01178.3prime
ATGGTCTAGAAAGCTTCGTCAGACATGATCGATTTTTAAAGCATCCAAAG
TGGTGCCATCGGCATGTGCTTTTTGAGCGTAGTAGCCATCGTAGGAGCTT
TGCGCCTTGTCAACCTCCTGCTGATGCTGCAACAGTTGCAGTTGCTCGTA
GGCAGCCTCCTGAACCTTGCGGCGCTCCTCCTCCGCCAGTCGCTTTACTT
CGTTCTCTTCAAACTGCTGCGCCTGGAGTTCAGCGGATGCCGCTGCTCGC
TCCGCCGCTGCCTCCTGGTACTCATCGTAGGAGTGCAGGCTGCGGTCACT
ACTTTCAAGCTTGTGCAGCGACGATAGCTGCTCCTTGGCCGCCTCCGCAA
TTTCGCGCCGCTTCGCATCCGCCTGGCGCTTCGCCTCTCGCTTGCTGCGT
TCCTGCTCTTCCAGCTCCTCGCGAGCGGCATAAAACTTGGGCGAAATGAC
GGGTGGACGGTTCTCGTGGGTGCGCTGGTGGCGCTTCAGCGCCGTCTCCT
GGCGGAAATGGGTGCCGCAGGTCTTGCACTCAAAGGGTTTCTCGCCCGTA
TGAATCCACTCGTGATGCCTCAACGTTTGAGCCTTTGCGAATCTTTTGGG
GCAAAAGCGGCAGGCAAAATCTTTGACCTTTTCGTGGATGATCTTATAGT
GCCGCTTCATGTTTCCGATATTGTTGAATCCCTGACCACAACCGGGGCAG
ATATGTTTGCCCTCCTTCTTGGTAAAGTTCACCTGCGGCGACCACGACGG
CACTGAAACAGAGGGTATGGGGTTCACAGCAG
BS01178.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-PA | 1545 | CG10274-RA | 782..1545 | 782..19 | 3820 | 100 | Minus |
CG10270-PA | 2325 | D19B-RA | 1708..1760 | 747..695 | 165 | 92.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-RB | 3034 | CG10274-RB | 1891..2654 | 782..19 | 3820 | 100 | Minus |
D19A-RA | 3233 | CG10269-RA | 2015..2313 | 782..484 | 640 | 80.9 | Minus |
D19B-RA | 2685 | CG10270-RA | 1822..2078 | 752..496 | 370 | 77.7 | Minus |
D19A-RA | 3233 | CG10269-RA | 2429..2680 | 272..21 | 240 | 73.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6179057..6179820 | 19..782 | 3820 | 100 | Plus |
3L | 28110227 | 3L | 6186750..6187048 | 484..782 | 640 | 80.9 | Plus |
3L | 28110227 | 3L | 6182783..6183039 | 496..752 | 370 | 76.3 | Plus |
3L | 28110227 | 3L | 6191484..6191682 | 686..488 | 260 | 75.4 | Minus |
3L | 28110227 | 3L | 6186383..6186634 | 21..272 | 240 | 73 | Plus |
3L | 28110227 | 3L | 6182523..6182650 | 143..270 | 190 | 76.6 | Plus |
Blast to na_te.dros performed 2015-02-11 12:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3267..3310 | 162..119 | 112 | 72.7 | Minus |
BS01178.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:55 Download gff for
BS01178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-PA | 782..1545 | 19..782 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:32 Download gff for
BS01178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-PA | 782..1545 | 19..782 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:41:02 Download gff for
BS01178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RA | 1945..2713 | 10..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:47:25 Download gff for
BS01178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1891..2659 | 10..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:47:25 Download gff for
BS01178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6179052..6179820 | 10..782 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:41:02 Download gff for
BS01178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6172152..6172920 | 10..782 | 99 | | Plus |
BS01178.5prime Sequence
818 bp (817 high quality bases) assembled on 2005-11-30
> BS01178.5prime
GAAGTTATCAGTCGACATGAAGAAGATGCACGGCATCACCAAGGCAGCGG
CGCCCCCACGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGT
CCCATGGCGCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCC
TTTCCCCTGTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAA
AGGATCATCTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTAC
TGTGGCGTGGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGAC
GCATACCCAGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGC
ACAATAAGCAGAGCCTGGCCAACCACATTAAGATCGTGCACGAGAAGATC
AAAAACTATGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCACACGC
CTGCAAGATCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCA
AGGTTTGTGGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTG
AAGACTCATGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCG
GCAGGTGGAAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCG
CGCCACCAGTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCT
GCCGACGAATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAA
AGATCCACGCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTG
CTGTGAACCCCATACCCT
BS01178.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-PA | 1545 | CG10274-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
CG10270-PA | 2325 | D19B-RA | 1393..1441 | 419..467 | 170 | 93.8 | Plus |
CG10270-PA | 2325 | D19B-RA | 1045..1107 | 71..133 | 165 | 90.4 | Plus |
CG10269-PA | 2538 | D19A-RA | 1477..1560 | 419..502 | 145 | 86.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-RB | 3034 | CG10274-RB | 1108..1911 | 15..818 | 4020 | 100 | Plus |
D19A-RA | 3233 | CG10269-RA | 1217..1766 | 15..564 | 950 | 78.8 | Plus |
D19B-RA | 2685 | CG10270-RA | 1153..1662 | 60..569 | 840 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6180179..6180668 | 504..15 | 2450 | 100 | Minus |
3L | 28110227 | 3L | 6179800..6180117 | 818..501 | 1590 | 100 | Minus |
3L | 28110227 | 3L | 6187297..6187846 | 564..15 | 935 | 78 | Minus |
3L | 28110227 | 3L | 6183199..6183708 | 569..60 | 840 | 77.6 | Minus |
3L | 28110227 | 3L | 6190735..6191126 | 113..504 | 535 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:02:19 has no hits.
BS01178.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:56 Download gff for
BS01178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:34 Download gff for
BS01178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:15:38 Download gff for
BS01178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RA | 1160..1965 | 12..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:25 Download gff for
BS01178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1106..1911 | 12..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:25 Download gff for
BS01178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6179800..6180115 | 503..818 | 100 | <- | Minus |
3L | 6180181..6180670 | 12..502 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:15:38 Download gff for
BS01178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6172900..6173215 | 503..818 | 100 | <- | Minus |
arm_3L | 6173281..6173770 | 12..502 | 99 | | Minus |
BS01178.complete Sequence
1579 bp (1579 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634554
> BS01178.complete
GAAGTTATCAGTCGACATGAAGAAGATGCACGGCATCACCAAGGCAGCGG
CGCCCCCACGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGT
CCCATGGCGCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCC
TTTCCCCTGTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAA
AGGATCATCTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTAC
TGTGGCGTGGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGAC
GCATACCCAGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGC
ACAATAAGCAGAGCCTGGCCAACCACATTAAGATCGTGCACGAGAAGATC
AAAAACTATGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCACACGC
CTGCAAGATCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCA
AGGTTTGTGGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTG
AAGACTCATGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCG
GCAGGTGGAAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCG
CGCCACCAGTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCT
GCCGACGAATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAA
AGATCCACGCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTG
CTGTGAACCCCATACCCTCTGTTTCAGTGCCGTCGTGGTCGCCGCAGGTG
AACTTTACCAAGAAGGAGGGCAAACATATCTGCCCCGGTTGTGGTCAGGG
ATTCAACAATATCGGAAACATGAAGCGGCACTATAAGATCATCCACGAAA
AGGTCAAAGATTTTGCCTGCCGCTTTTGCCCCAAAAGATTCGCAAAGGCT
CAAACGTTGAGGCATCACGAGTGGATTCATACGGGCGAGAAACCCTTTGA
GTGCAAGACCTGCGGCACCCATTTCCGCCAGGAGACGGCGCTGAAGCGCC
ACCAGCGCACCCACGAGAACCGTCCACCCGTCATTTCGCCCAAGTTTTAT
GCCGCTCGCGAGGAGCTGGAAGAGCAGGAACGCAGCAAGCGAGAGGCGAA
GCGCCAGGCGGATGCGAAGCGGCGCGAAATTGCGGAGGCGGCCAAGGAGC
AGCTATCGTCGCTGCACAAGCTTGAAAGTAGTGACCGCAGCCTGCACTCC
TACGATGAGTACCAGGAGGCAGCGGCGGAGCGAGCAGCGGCATCCGCTGA
ACTCCAGGCGCAGCAGTTTGAAGAGAACGAAGTAAAGCGACTGGCGGAGG
AGGAGCGCCGCAAGGTTCAGGAGGCTGCCTACGAGCAACTGCAACTGTTG
CAGCATCAGCAGGAGGTTGACAAGGCGCAAAGCTCCTACGATGGCTACTA
CGCTCAAAAAGCACATGCCGATGGCACCACTTTGGATGCTTTAAAAATCG
ATCATGTCTGACGAAGCTTTCTAGACCAT
BS01178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-RB | 2592 | CG10274-PB | 1046..2592 | 15..1561 | 7735 | 100 | Plus |
D19A-RA | 2538 | CG10269-PA | 1073..1622 | 15..564 | 935 | 78 | Plus |
D19B-RA | 2325 | CG10270-PA | 1034..1543 | 60..569 | 840 | 77.6 | Plus |
D19A-RA | 2538 | CG10269-PA | 1858..2169 | 785..1096 | 660 | 80.8 | Plus |
D19A-RA | 2538 | CG10269-PA | 2285..2536 | 1308..1559 | 240 | 73 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-RB | 3034 | CG10274-RB | 1108..2654 | 15..1561 | 7735 | 100 | Plus |
D19A-RA | 3233 | CG10269-RA | 1217..1766 | 15..564 | 935 | 78 | Plus |
D19B-RA | 2685 | CG10270-RA | 1153..1662 | 60..569 | 840 | 77.6 | Plus |
D19A-RA | 3233 | CG10269-RA | 2002..2313 | 785..1096 | 660 | 80.8 | Plus |
D19A-RA | 3233 | CG10269-RA | 2429..2680 | 1308..1559 | 240 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6179057..6180117 | 1561..501 | 5305 | 100 | Minus |
3L | 28110227 | 3L | 6180179..6180668 | 504..15 | 2450 | 100 | Minus |
3L | 28110227 | 3L | 6187297..6187846 | 564..15 | 935 | 78 | Minus |
3L | 28110227 | 3L | 6183199..6183708 | 569..60 | 840 | 77.6 | Minus |
3L | 28110227 | 3L | 6186750..6187061 | 1096..785 | 660 | 80.8 | Minus |
3L | 28110227 | 3L | 6190735..6191126 | 113..504 | 535 | 75.8 | Plus |
3L | 28110227 | 3L | 6182783..6183039 | 1084..828 | 370 | 76.3 | Minus |
3L | 28110227 | 3L | 6191484..6191682 | 894..1092 | 260 | 75.4 | Plus |
3L | 28110227 | 3L | 6186383..6186634 | 1559..1308 | 240 | 73 | Minus |
3L | 28110227 | 3L | 6182523..6182650 | 1437..1310 | 190 | 76.6 | Minus |
Blast to na_te.dros performed 2014-11-27 11:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3267..3310 | 1418..1461 | 112 | 72.7 | Plus |
BS01178.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:27 Download gff for
BS01178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1044..2592 | 12..1561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:28 Download gff for
BS01178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1044..2597 | 12..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:08 Download gff for
BS01178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RA | 1164..2709 | 17..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:27 Download gff for
BS01178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1044..2597 | 12..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:09 Download gff for
BS01178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1110..2655 | 17..1563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:09 Download gff for
BS01178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6179056..6180115 | 503..1563 | 99 | <- | Minus |
3L | 6180181..6180666 | 17..502 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:08 Download gff for
BS01178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6172156..6173215 | 503..1563 | 99 | <- | Minus |
arm_3L | 6173281..6173766 | 17..502 | 100 | | Minus |
BS01178.pep Sequence
Translation from 16 to 1560
> BS01178.pep
MKKMHGITKAAAPPRDYPCTECEKVFRCPMALKKHMYKHDGKELPFPCNI
CGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHILTHTQEK
KFKCHICEHASHNKQSLANHIKIVHEKIKNYACQYCGKTFGKSHACKIHE
MTHTGEKRCECKVCGKKFLYPKSLTKHLKTHEKRVLRAIETYRQRQVEMG
ETPGEQFDNPPAPPVEGISIEPIMSRNAADELLKVCAESVATIPKDPRRV
QRVDLAQLAGTAVNPIPSVSVPSWSPQVNFTKKEGKHICPGCGQGFNNIG
NMKRHYKIIHEKVKDFACRFCPKRFAKAQTLRHHEWIHTGEKPFECKTCG
THFRQETALKRHQRTHENRPPVISPKFYAAREELEEQERSKREAKRQADA
KRREIAEAAKEQLSSLHKLESSDRSLHSYDEYQEAAAERAAASAELQAQQ
FEENEVKRLAEEERRKVQEAAYEQLQLLQHQQEVDKAQSSYDGYYAQKAH
ADGTTLDALKIDHV*
BS01178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-PB | 863 | CG10274-PB | 350..863 | 1..514 | 2779 | 100 | Plus |
D19A-PA | 845 | CG10269-PA | 359..838 | 1..445 | 1589 | 62.7 | Plus |
D19B-PA | 774 | CG10270-PA | 334..774 | 1..514 | 1448 | 55 | Plus |
CG7386-PA | 662 | CG7386-PA | 276..662 | 1..431 | 1290 | 55.7 | Plus |
CG10147-PB | 448 | CG10147-PB | 251..430 | 3..182 | 439 | 45.9 | Plus |
D19B-PA | 774 | CG10270-PA | 255..514 | 104..369 | 266 | 29.1 | Plus |