Clone BS01178 Report

Search the DGRC for BS01178

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG10274-RA
Protein status:BS01178.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01178.3prime Sequence

782 bp (759 high quality bases) assembled on 2005-11-30

> BS01178.3prime
ATGGTCTAGAAAGCTTCGTCAGACATGATCGATTTTTAAAGCATCCAAAG
TGGTGCCATCGGCATGTGCTTTTTGAGCGTAGTAGCCATCGTAGGAGCTT
TGCGCCTTGTCAACCTCCTGCTGATGCTGCAACAGTTGCAGTTGCTCGTA
GGCAGCCTCCTGAACCTTGCGGCGCTCCTCCTCCGCCAGTCGCTTTACTT
CGTTCTCTTCAAACTGCTGCGCCTGGAGTTCAGCGGATGCCGCTGCTCGC
TCCGCCGCTGCCTCCTGGTACTCATCGTAGGAGTGCAGGCTGCGGTCACT
ACTTTCAAGCTTGTGCAGCGACGATAGCTGCTCCTTGGCCGCCTCCGCAA
TTTCGCGCCGCTTCGCATCCGCCTGGCGCTTCGCCTCTCGCTTGCTGCGT
TCCTGCTCTTCCAGCTCCTCGCGAGCGGCATAAAACTTGGGCGAAATGAC
GGGTGGACGGTTCTCGTGGGTGCGCTGGTGGCGCTTCAGCGCCGTCTCCT
GGCGGAAATGGGTGCCGCAGGTCTTGCACTCAAAGGGTTTCTCGCCCGTA
TGAATCCACTCGTGATGCCTCAACGTTTGAGCCTTTGCGAATCTTTTGGG
GCAAAAGCGGCAGGCAAAATCTTTGACCTTTTCGTGGATGATCTTATAGT
GCCGCTTCATGTTTCCGATATTGTTGAATCCCTGACCACAACCGGGGCAG
ATATGTTTGCCCTCCTTCTTGGTAAAGTTCACCTGCGGCGACCACGACGG
CACTGAAACAGAGGGTATGGGGTTCACAGCAG

BS01178.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-PA 1545 CG10274-RA 782..1545 782..19 3820 100 Minus
CG10270-PA 2325 D19B-RA 1708..1760 747..695 165 92.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-RB 3034 CG10274-RB 1891..2654 782..19 3820 100 Minus
D19A-RA 3233 CG10269-RA 2015..2313 782..484 640 80.9 Minus
D19B-RA 2685 CG10270-RA 1822..2078 752..496 370 77.7 Minus
D19A-RA 3233 CG10269-RA 2429..2680 272..21 240 73.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6179057..6179820 19..782 3820 100 Plus
3L 28110227 3L 6186750..6187048 484..782 640 80.9 Plus
3L 28110227 3L 6182783..6183039 496..752 370 76.3 Plus
3L 28110227 3L 6191484..6191682 686..488 260 75.4 Minus
3L 28110227 3L 6186383..6186634 21..272 240 73 Plus
3L 28110227 3L 6182523..6182650 143..270 190 76.6 Plus
Blast to na_te.dros performed 2015-02-11 12:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3267..3310 162..119 112 72.7 Minus

BS01178.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:55 Download gff for BS01178.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-PA 782..1545 19..782 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:32 Download gff for BS01178.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-PA 782..1545 19..782 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:41:02 Download gff for BS01178.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-RA 1945..2713 10..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:47:25 Download gff for BS01178.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1891..2659 10..782 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:47:25 Download gff for BS01178.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6179052..6179820 10..782 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:41:02 Download gff for BS01178.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6172152..6172920 10..782 99   Plus

BS01178.5prime Sequence

818 bp (817 high quality bases) assembled on 2005-11-30

> BS01178.5prime
GAAGTTATCAGTCGACATGAAGAAGATGCACGGCATCACCAAGGCAGCGG
CGCCCCCACGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGT
CCCATGGCGCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCC
TTTCCCCTGTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAA
AGGATCATCTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTAC
TGTGGCGTGGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGAC
GCATACCCAGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGC
ACAATAAGCAGAGCCTGGCCAACCACATTAAGATCGTGCACGAGAAGATC
AAAAACTATGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCACACGC
CTGCAAGATCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCA
AGGTTTGTGGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTG
AAGACTCATGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCG
GCAGGTGGAAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCG
CGCCACCAGTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCT
GCCGACGAATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAA
AGATCCACGCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTG
CTGTGAACCCCATACCCT

BS01178.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-PA 1545 CG10274-RA 1..802 17..818 4010 100 Plus
CG10270-PA 2325 D19B-RA 1393..1441 419..467 170 93.8 Plus
CG10270-PA 2325 D19B-RA 1045..1107 71..133 165 90.4 Plus
CG10269-PA 2538 D19A-RA 1477..1560 419..502 145 86.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-RB 3034 CG10274-RB 1108..1911 15..818 4020 100 Plus
D19A-RA 3233 CG10269-RA 1217..1766 15..564 950 78.8 Plus
D19B-RA 2685 CG10270-RA 1153..1662 60..569 840 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6180179..6180668 504..15 2450 100 Minus
3L 28110227 3L 6179800..6180117 818..501 1590 100 Minus
3L 28110227 3L 6187297..6187846 564..15 935 78 Minus
3L 28110227 3L 6183199..6183708 569..60 840 77.6 Minus
3L 28110227 3L 6190735..6191126 113..504 535 75.8 Plus
Blast to na_te.dros performed on 2015-02-10 23:02:19 has no hits.

BS01178.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:56 Download gff for BS01178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:34 Download gff for BS01178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:15:38 Download gff for BS01178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-RA 1160..1965 12..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:25 Download gff for BS01178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1106..1911 12..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:25 Download gff for BS01178.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6179800..6180115 503..818 100 <- Minus
3L 6180181..6180670 12..502 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:15:38 Download gff for BS01178.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6172900..6173215 503..818 100 <- Minus
arm_3L 6173281..6173770 12..502 99   Minus

BS01178.complete Sequence

1579 bp (1579 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634554

> BS01178.complete
GAAGTTATCAGTCGACATGAAGAAGATGCACGGCATCACCAAGGCAGCGG
CGCCCCCACGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGT
CCCATGGCGCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCC
TTTCCCCTGTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAA
AGGATCATCTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTAC
TGTGGCGTGGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGAC
GCATACCCAGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGC
ACAATAAGCAGAGCCTGGCCAACCACATTAAGATCGTGCACGAGAAGATC
AAAAACTATGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCACACGC
CTGCAAGATCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCA
AGGTTTGTGGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTG
AAGACTCATGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCG
GCAGGTGGAAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCG
CGCCACCAGTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCT
GCCGACGAATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAA
AGATCCACGCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTG
CTGTGAACCCCATACCCTCTGTTTCAGTGCCGTCGTGGTCGCCGCAGGTG
AACTTTACCAAGAAGGAGGGCAAACATATCTGCCCCGGTTGTGGTCAGGG
ATTCAACAATATCGGAAACATGAAGCGGCACTATAAGATCATCCACGAAA
AGGTCAAAGATTTTGCCTGCCGCTTTTGCCCCAAAAGATTCGCAAAGGCT
CAAACGTTGAGGCATCACGAGTGGATTCATACGGGCGAGAAACCCTTTGA
GTGCAAGACCTGCGGCACCCATTTCCGCCAGGAGACGGCGCTGAAGCGCC
ACCAGCGCACCCACGAGAACCGTCCACCCGTCATTTCGCCCAAGTTTTAT
GCCGCTCGCGAGGAGCTGGAAGAGCAGGAACGCAGCAAGCGAGAGGCGAA
GCGCCAGGCGGATGCGAAGCGGCGCGAAATTGCGGAGGCGGCCAAGGAGC
AGCTATCGTCGCTGCACAAGCTTGAAAGTAGTGACCGCAGCCTGCACTCC
TACGATGAGTACCAGGAGGCAGCGGCGGAGCGAGCAGCGGCATCCGCTGA
ACTCCAGGCGCAGCAGTTTGAAGAGAACGAAGTAAAGCGACTGGCGGAGG
AGGAGCGCCGCAAGGTTCAGGAGGCTGCCTACGAGCAACTGCAACTGTTG
CAGCATCAGCAGGAGGTTGACAAGGCGCAAAGCTCCTACGATGGCTACTA
CGCTCAAAAAGCACATGCCGATGGCACCACTTTGGATGCTTTAAAAATCG
ATCATGTCTGACGAAGCTTTCTAGACCAT

BS01178.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-RB 2592 CG10274-PB 1046..2592 15..1561 7735 100 Plus
D19A-RA 2538 CG10269-PA 1073..1622 15..564 935 78 Plus
D19B-RA 2325 CG10270-PA 1034..1543 60..569 840 77.6 Plus
D19A-RA 2538 CG10269-PA 1858..2169 785..1096 660 80.8 Plus
D19A-RA 2538 CG10269-PA 2285..2536 1308..1559 240 73 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-RB 3034 CG10274-RB 1108..2654 15..1561 7735 100 Plus
D19A-RA 3233 CG10269-RA 1217..1766 15..564 935 78 Plus
D19B-RA 2685 CG10270-RA 1153..1662 60..569 840 77.6 Plus
D19A-RA 3233 CG10269-RA 2002..2313 785..1096 660 80.8 Plus
D19A-RA 3233 CG10269-RA 2429..2680 1308..1559 240 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6179057..6180117 1561..501 5305 100 Minus
3L 28110227 3L 6180179..6180668 504..15 2450 100 Minus
3L 28110227 3L 6187297..6187846 564..15 935 78 Minus
3L 28110227 3L 6183199..6183708 569..60 840 77.6 Minus
3L 28110227 3L 6186750..6187061 1096..785 660 80.8 Minus
3L 28110227 3L 6190735..6191126 113..504 535 75.8 Plus
3L 28110227 3L 6182783..6183039 1084..828 370 76.3 Minus
3L 28110227 3L 6191484..6191682 894..1092 260 75.4 Plus
3L 28110227 3L 6186383..6186634 1559..1308 240 73 Minus
3L 28110227 3L 6182523..6182650 1437..1310 190 76.6 Minus
Blast to na_te.dros performed 2014-11-27 11:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3267..3310 1418..1461 112 72.7 Plus

BS01178.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:27 Download gff for BS01178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1044..2592 12..1561 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:28 Download gff for BS01178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1044..2597 12..1570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:08 Download gff for BS01178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10274-RA 1164..2709 17..1563 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:27 Download gff for BS01178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1044..2597 12..1570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:09 Download gff for BS01178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1110..2655 17..1563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:09 Download gff for BS01178.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6179056..6180115 503..1563 99 <- Minus
3L 6180181..6180666 17..502 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:08 Download gff for BS01178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6172156..6173215 503..1563 99 <- Minus
arm_3L 6173281..6173766 17..502 100   Minus

BS01178.pep Sequence

Translation from 16 to 1560

> BS01178.pep
MKKMHGITKAAAPPRDYPCTECEKVFRCPMALKKHMYKHDGKELPFPCNI
CGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHILTHTQEK
KFKCHICEHASHNKQSLANHIKIVHEKIKNYACQYCGKTFGKSHACKIHE
MTHTGEKRCECKVCGKKFLYPKSLTKHLKTHEKRVLRAIETYRQRQVEMG
ETPGEQFDNPPAPPVEGISIEPIMSRNAADELLKVCAESVATIPKDPRRV
QRVDLAQLAGTAVNPIPSVSVPSWSPQVNFTKKEGKHICPGCGQGFNNIG
NMKRHYKIIHEKVKDFACRFCPKRFAKAQTLRHHEWIHTGEKPFECKTCG
THFRQETALKRHQRTHENRPPVISPKFYAAREELEEQERSKREAKRQADA
KRREIAEAAKEQLSSLHKLESSDRSLHSYDEYQEAAAERAAASAELQAQQ
FEENEVKRLAEEERRKVQEAAYEQLQLLQHQQEVDKAQSSYDGYYAQKAH
ADGTTLDALKIDHV*

BS01178.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-PB 863 CG10274-PB 350..863 1..514 2779 100 Plus
D19A-PA 845 CG10269-PA 359..838 1..445 1589 62.7 Plus
D19B-PA 774 CG10270-PA 334..774 1..514 1448 55 Plus
CG7386-PA 662 CG7386-PA 276..662 1..431 1290 55.7 Plus
CG10147-PB 448 CG10147-PB 251..430 3..182 439 45.9 Plus
D19B-PA 774 CG10270-PA 255..514 104..369 266 29.1 Plus